Wall clock time and date at job start Tue Mar 31 2020 22:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00078 * 2 1 4 4 H 1.08995 * 109.47095 * 29.99561 * 3 2 1 5 5 C 1.53003 * 109.46759 * 270.00024 * 3 2 1 6 6 C 1.50699 * 109.47470 * 150.00296 * 3 2 1 7 7 O 1.21286 * 119.99519 * 4.99603 * 6 3 2 8 8 N 1.34768 * 119.99963 * 184.99953 * 6 3 2 9 9 C 1.47210 * 126.70660 * 359.97387 * 8 6 3 10 10 C 1.53764 * 106.40333 * 148.69363 * 9 8 6 11 11 H 1.09004 * 112.03188 * 140.94650 * 10 9 8 12 12 C 1.54295 * 109.08408 * 266.67163 * 10 9 8 13 13 N 1.48528 * 104.69118 * 136.30392 * 12 10 9 14 14 C 1.46898 * 111.00180 * 200.77132 * 13 12 10 15 15 C 1.50702 * 109.47219 * 290.12481 * 14 13 12 16 16 O 1.21292 * 119.99662 * 0.02562 * 15 14 13 17 17 N 1.34774 * 120.00042 * 179.97438 * 15 14 13 18 18 C 1.37099 * 119.99845 * 180.02562 * 17 15 14 19 19 H 1.07994 * 120.00237 * 0.02562 * 18 17 15 20 20 C 1.38953 * 119.99467 * 180.02562 * 18 17 15 21 21 N 1.31418 * 119.99304 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00603 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46922 * 90.00071 * 22 20 18 24 24 H 1.48497 * 109.47194 * 210.00483 * 22 20 18 25 25 H 1.48498 * 109.46864 * 330.00254 * 22 20 18 26 26 C 1.48524 * 104.20836 * 320.32366 * 13 12 10 27 27 C 1.54307 * 104.69039 * 39.67711 * 26 13 12 28 28 C 1.52997 * 112.04775 * 97.98720 * 27 26 13 29 29 C 1.48055 * 127.12332 * 181.08400 * 8 6 3 30 30 H 1.09005 * 109.46917 * 299.99648 * 1 2 3 31 31 H 1.08996 * 109.47097 * 60.00409 * 1 2 3 32 32 H 1.08999 * 109.46970 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47009 * 60.00392 * 5 3 2 34 34 H 1.09004 * 109.46948 * 179.97438 * 5 3 2 35 35 H 1.08993 * 109.47595 * 299.99978 * 5 3 2 36 36 H 1.08997 * 110.06514 * 29.45842 * 9 8 6 37 37 H 1.08993 * 110.11563 * 267.95910 * 9 8 6 38 38 H 1.09001 * 110.39621 * 255.10607 * 12 10 9 39 39 H 1.09007 * 110.39501 * 17.38872 * 12 10 9 40 40 H 1.09001 * 109.47129 * 50.12733 * 14 13 12 41 41 H 1.09000 * 109.47127 * 170.12632 * 14 13 12 42 42 H 0.96997 * 120.00040 * 0.02562 * 17 15 14 43 43 H 0.97006 * 119.99586 * 179.97438 * 21 20 18 44 44 H 1.09001 * 110.39209 * 280.87345 * 26 13 12 45 45 H 1.08995 * 110.39145 * 158.48046 * 26 13 12 46 46 H 1.09002 * 109.47153 * 302.31995 * 28 27 26 47 47 H 1.09001 * 109.46832 * 182.32186 * 28 27 26 48 48 H 1.09004 * 109.47261 * 62.32168 * 28 27 26 49 49 H 1.08997 * 111.55900 * 92.09254 * 29 8 6 50 50 H 1.09000 * 108.98134 * 330.30962 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5137 5 6 2.2177 1.7713 -1.4426 6 6 3.3387 1.2639 0.7103 7 8 3.7897 0.2045 1.0913 8 7 4.0254 2.4040 0.9222 9 6 3.6199 3.7622 0.5249 10 6 4.2032 4.7158 1.5807 11 1 4.5769 5.6384 1.1365 12 6 3.1454 4.9630 2.6765 13 7 3.8975 4.8702 3.9539 14 6 2.9935 4.5934 5.0782 15 6 2.1405 5.8063 5.3473 16 8 2.2724 6.8030 4.6688 17 7 1.2305 5.7830 6.3411 18 6 0.4541 6.8863 6.5855 19 1 0.5715 7.7738 5.9815 20 6 -0.4838 6.8624 7.6105 21 7 -1.2283 7.9198 7.8445 22 14 -0.6873 5.3272 8.6549 23 1 0.2234 5.4005 9.8255 24 1 -2.0924 5.2316 9.1260 25 1 -0.3548 4.1288 7.8434 26 6 4.8415 3.7436 3.7401 27 6 5.3251 3.9093 2.2841 28 6 6.6798 4.6160 2.2059 29 6 5.3453 2.5433 1.5784 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.2568 1.8014 -1.9563 34 1 2.6606 2.7673 -1.4426 35 1 2.8828 1.0774 -1.9564 36 1 2.5328 3.8390 0.5114 37 1 4.0237 4.0013 -0.4589 38 1 2.7074 5.9549 2.5649 39 1 2.3691 4.1989 2.6344 40 1 2.3534 3.7468 4.8298 41 1 3.5798 4.3573 5.9662 42 1 1.1248 4.9858 6.8834 43 1 -1.8833 7.9031 8.5598 44 1 4.3288 2.7897 3.8638 45 1 5.6821 3.8163 4.4301 46 1 6.6096 5.5908 2.6886 47 1 6.9612 4.7475 1.1610 48 1 7.4339 4.0133 2.7121 49 1 6.1586 2.5088 0.8535 50 1 5.4628 1.7453 2.3115 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101146643.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:01 Heat of formation + Delta-G solvation = -117.682850 kcal Electronic energy + Delta-G solvation = -31066.397854 eV Core-core repulsion = 26900.218051 eV Total energy + Delta-G solvation = -4166.179802 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.05052 -40.62861 -39.91149 -38.50171 -36.89761 -35.91892 -34.24350 -33.74788 -32.34152 -32.12337 -29.32969 -27.82687 -27.70387 -27.01142 -26.62345 -24.96201 -23.65787 -22.27129 -21.30504 -20.71611 -20.32757 -19.99419 -18.45208 -17.86567 -17.48981 -17.27545 -16.87556 -16.55081 -16.40037 -16.26357 -16.21987 -15.64367 -15.26231 -15.16556 -14.97834 -14.79569 -14.50029 -14.19482 -14.03154 -13.88436 -13.86350 -13.66945 -13.36911 -13.26821 -13.06512 -12.95576 -12.93105 -12.76210 -12.49170 -12.43646 -12.25812 -12.13753 -12.00475 -11.74861 -11.63838 -11.56556 -11.46599 -11.12359 -10.60358 -10.41106 -10.25146 -9.85463 -9.39865 -8.42495 -6.02662 1.28076 1.32892 1.41294 1.42711 1.60145 1.93337 2.20561 2.60319 2.84340 3.10513 3.15962 3.23373 3.45819 3.51804 3.70051 3.82401 3.94656 4.04099 4.08630 4.13226 4.20849 4.26575 4.33836 4.39962 4.43247 4.47430 4.56324 4.57709 4.61112 4.64939 4.70027 4.75290 4.78588 4.80219 4.89946 4.93931 5.06863 5.13419 5.16002 5.21908 5.28204 5.49505 5.51113 5.84224 5.87458 5.98573 5.99392 6.37747 6.58281 6.87103 6.99771 7.38301 7.94551 8.74977 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010927 B = 0.003176 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.873460 B = 8813.591144 C =10321.858969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.394 6.394 3 C 0.071 3.929 4 H 0.099 0.901 5 C -0.165 4.165 6 C 0.528 3.472 7 O -0.574 6.574 8 N -0.613 5.613 9 C 0.100 3.900 10 C -0.089 4.089 11 H 0.120 0.880 12 C 0.044 3.956 13 N -0.501 5.501 14 C 0.043 3.957 15 C 0.456 3.544 16 O -0.600 6.600 17 N -0.594 5.594 18 C -0.325 4.325 19 H 0.059 0.941 20 C -0.012 4.012 21 N -0.933 5.933 22 Si 0.960 3.040 23 H -0.257 1.257 24 H -0.274 1.274 25 H -0.237 1.237 26 C 0.043 3.957 27 C -0.063 4.063 28 C -0.121 4.121 29 C 0.118 3.882 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.067 0.933 39 H 0.034 0.966 40 H 0.067 0.933 41 H 0.116 0.884 42 H 0.387 0.613 43 H 0.279 0.721 44 H 0.038 0.962 45 H 0.094 0.906 46 H 0.058 0.942 47 H 0.077 0.923 48 H 0.069 0.931 49 H 0.096 0.904 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.773 -14.991 -17.381 25.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.313 6.313 3 C 0.010 3.990 4 H 0.117 0.883 5 C -0.223 4.223 6 C 0.318 3.682 7 O -0.453 6.453 8 N -0.347 5.347 9 C -0.022 4.022 10 C -0.109 4.109 11 H 0.138 0.862 12 C -0.084 4.084 13 N -0.224 5.224 14 C -0.089 4.089 15 C 0.243 3.757 16 O -0.484 6.484 17 N -0.236 5.236 18 C -0.454 4.454 19 H 0.077 0.923 20 C -0.211 4.211 21 N -0.574 5.574 22 Si 0.781 3.219 23 H -0.182 1.182 24 H -0.199 1.199 25 H -0.160 1.160 26 C -0.085 4.085 27 C -0.065 4.065 28 C -0.179 4.179 29 C -0.005 4.005 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.117 0.883 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.126 0.874 38 H 0.085 0.915 39 H 0.052 0.948 40 H 0.085 0.915 41 H 0.134 0.866 42 H 0.222 0.778 43 H 0.088 0.912 44 H 0.056 0.944 45 H 0.113 0.887 46 H 0.077 0.923 47 H 0.096 0.904 48 H 0.088 0.912 49 H 0.114 0.886 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.248 -14.544 -17.392 25.309 hybrid contribution -1.438 -0.860 1.086 1.997 sum 9.810 -15.405 -16.306 24.483 Atomic orbital electron populations 1.23086 0.78666 1.04296 1.01287 1.87985 1.21823 1.26278 1.95209 1.22016 0.91957 0.86745 0.98316 0.88307 1.22262 1.04485 1.02751 0.92764 1.20556 0.86551 0.82184 0.78957 1.90693 1.70791 1.30891 1.52886 1.48660 1.21027 1.06669 1.58373 1.22488 1.01302 0.79513 0.98909 1.22819 0.94271 0.99333 0.94445 0.86232 1.23180 0.95207 1.00906 0.89107 1.65099 1.15301 1.39551 1.02475 1.21986 0.95382 0.93812 0.97731 1.20680 0.82552 0.90512 0.81957 1.90522 1.70666 1.36384 1.50798 1.42059 1.34981 1.14629 1.31930 1.18998 1.16038 0.93759 1.16626 0.92301 1.26031 0.95085 1.01578 0.98395 1.69797 1.23656 1.31380 1.32517 0.85426 0.79020 0.78275 0.79201 1.18191 1.19897 1.16038 1.23330 0.96403 0.91485 0.97252 1.21986 0.97169 0.94039 0.93289 1.21636 0.92905 1.00125 1.03195 1.22308 0.84815 0.96418 0.96916 0.93574 0.91650 0.88274 0.89374 0.88819 0.92113 0.89453 0.87433 0.91491 0.94801 0.91488 0.86619 0.77777 0.91150 0.94412 0.88732 0.92332 0.90400 0.91190 0.88601 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.82 113.37 1.23 1.57 16 2 O -0.39 -9.21 9.89 -129.99 -1.28 -10.50 16 3 C 0.07 1.35 2.44 29.85 0.07 1.42 16 4 H 0.10 1.58 7.27 -2.39 -0.02 1.56 16 5 C -0.17 -2.06 9.38 71.98 0.68 -1.39 16 6 C 0.53 13.02 7.27 87.66 0.64 13.65 16 7 O -0.57 -19.61 16.75 15.94 0.27 -19.34 16 8 N -0.61 -11.59 3.34 -813.07 -2.71 -14.30 16 9 C 0.10 1.38 4.62 86.50 0.40 1.78 16 10 C -0.09 -1.59 3.72 -9.40 -0.03 -1.63 16 11 H 0.12 1.88 7.90 -2.38 -0.02 1.87 16 12 C 0.04 1.20 5.23 86.43 0.45 1.66 16 13 N -0.50 -14.73 5.06 -886.55 -4.49 -19.22 16 14 C 0.04 1.36 5.30 85.56 0.45 1.82 16 15 C 0.46 20.51 7.59 87.66 0.66 21.17 16 16 O -0.60 -32.36 14.41 -3.07 -0.04 -32.40 16 17 N -0.59 -28.13 5.09 -306.99 -1.56 -29.69 16 18 C -0.33 -18.92 10.16 84.04 0.85 -18.06 16 19 H 0.06 4.06 7.39 -2.91 -0.02 4.03 16 20 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 21 N -0.93 -55.89 13.96 21.66 0.30 -55.59 16 22 Si 0.96 39.07 27.74 68.60 1.90 40.97 16 23 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 25 H -0.24 -8.27 6.52 99.48 0.65 -7.62 16 26 C 0.04 0.94 5.56 86.43 0.48 1.42 16 27 C -0.06 -1.07 1.07 -50.78 -0.05 -1.13 16 28 C -0.12 -1.61 8.53 71.98 0.61 -0.99 16 29 C 0.12 2.03 6.05 86.34 0.52 2.55 16 30 H 0.05 0.67 8.09 -2.38 -0.02 0.65 16 31 H 0.06 0.69 7.87 -2.39 -0.02 0.67 16 32 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.09 0.82 7.87 -2.39 -0.02 0.80 16 34 H 0.09 0.80 5.78 -2.38 -0.01 0.79 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.09 1.13 6.47 -2.39 -0.02 1.11 16 37 H 0.11 0.87 7.62 -2.39 -0.02 0.86 16 38 H 0.07 2.32 6.90 -2.39 -0.02 2.31 16 39 H 0.03 0.93 7.21 -2.38 -0.02 0.91 16 40 H 0.07 1.93 7.88 -2.39 -0.02 1.91 16 41 H 0.12 3.15 8.13 -2.39 -0.02 3.13 16 42 H 0.39 15.46 5.76 -92.71 -0.53 14.92 16 43 H 0.28 15.29 8.31 -92.70 -0.77 14.52 16 44 H 0.04 0.88 7.45 -2.39 -0.02 0.86 16 45 H 0.09 1.88 7.90 -2.39 -0.02 1.86 16 46 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 49 H 0.10 1.30 7.88 -2.39 -0.02 1.28 16 50 H 0.06 1.37 7.41 -2.39 -0.02 1.35 16 Total: -1.00 -83.80 392.00 0.17 -83.64 By element: Atomic # 1 Polarization: 32.45 SS G_CDS: 0.35 Total: 32.80 kcal Atomic # 6 Polarization: 16.21 SS G_CDS: 7.43 Total: 23.64 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -8.46 Total: -118.80 kcal Atomic # 8 Polarization: -61.18 SS G_CDS: -1.06 Total: -62.24 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 1.90 Total: 40.97 kcal Total: -83.80 0.17 -83.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101146643.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.045 kcal (2) G-P(sol) polarization free energy of solvation -83.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds