Wall clock time and date at job start Tue Mar 31 2020 22:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 113.99880 * 2 1 4 4 H 1.08999 * 109.47399 * 330.00043 * 3 2 1 5 5 C 1.53002 * 109.46960 * 90.00845 * 3 2 1 6 6 C 1.50706 * 109.46832 * 210.00357 * 3 2 1 7 7 O 1.21283 * 120.00166 * 352.43556 * 6 3 2 8 8 N 1.34782 * 119.99706 * 172.44333 * 6 3 2 9 9 C 1.47201 * 126.70329 * 175.05538 * 8 6 3 10 10 C 1.53757 * 106.40664 * 148.69450 * 9 8 6 11 11 H 1.09000 * 112.04292 * 140.94751 * 10 9 8 12 12 C 1.54307 * 109.07972 * 266.66954 * 10 9 8 13 13 N 1.48535 * 104.68842 * 136.30174 * 12 10 9 14 14 C 1.46904 * 110.99858 * 200.77119 * 13 12 10 15 15 C 1.50702 * 109.46988 * 290.12736 * 14 13 12 16 16 O 1.21288 * 119.99946 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99645 * 179.97438 * 15 14 13 18 18 C 1.37101 * 120.00120 * 179.97438 * 17 15 14 19 19 H 1.08007 * 119.99447 * 0.02562 * 18 17 15 20 20 C 1.38949 * 120.00312 * 180.02562 * 18 17 15 21 21 N 1.31410 * 119.99784 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 119.99840 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47255 * 90.00368 * 22 20 18 24 24 H 1.48503 * 109.46922 * 210.00129 * 22 20 18 25 25 H 1.48502 * 109.47470 * 330.00026 * 22 20 18 26 26 C 1.48530 * 104.20770 * 320.32022 * 13 12 10 27 27 C 1.54306 * 104.69023 * 39.67751 * 26 13 12 28 28 C 1.53005 * 112.04414 * 97.98332 * 27 26 13 29 29 C 1.48046 * 127.12428 * 356.16158 * 8 6 3 30 30 H 1.09004 * 109.46965 * 299.99456 * 1 2 3 31 31 H 1.08995 * 109.47212 * 59.99605 * 1 2 3 32 32 H 1.08994 * 109.47260 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47335 * 65.61770 * 5 3 2 34 34 H 1.09001 * 109.47019 * 185.62199 * 5 3 2 35 35 H 1.08998 * 109.46866 * 305.61761 * 5 3 2 36 36 H 1.09007 * 110.07119 * 29.45506 * 9 8 6 37 37 H 1.09005 * 110.11612 * 267.95549 * 9 8 6 38 38 H 1.08994 * 110.39699 * 255.10264 * 12 10 9 39 39 H 1.08999 * 110.39478 * 17.38590 * 12 10 9 40 40 H 1.09006 * 109.46872 * 50.12661 * 14 13 12 41 41 H 1.08997 * 109.47000 * 170.12160 * 14 13 12 42 42 H 0.97006 * 120.00019 * 0.02562 * 17 15 14 43 43 H 0.97003 * 120.00142 * 179.97438 * 21 20 18 44 44 H 1.08996 * 110.39052 * 280.87827 * 26 13 12 45 45 H 1.08998 * 110.39374 * 158.48377 * 26 13 12 46 46 H 1.09005 * 109.46950 * 302.32071 * 28 27 26 47 47 H 1.09001 * 109.46941 * 182.32280 * 28 27 26 48 48 H 1.08997 * 109.46884 * 62.32533 * 28 27 26 49 49 H 1.08998 * 111.56325 * 92.09249 * 29 8 6 50 50 H 1.09004 * 108.98090 * 330.31319 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2178 1.7713 1.4425 6 6 3.3386 1.2639 -0.7105 7 8 3.8116 0.2000 -1.0502 8 7 4.0010 2.4090 -0.9683 9 6 5.3442 2.5349 -1.5573 10 6 5.3465 3.8483 -2.3567 11 1 6.2904 4.3848 -2.2594 12 6 4.9766 3.5464 -3.8240 13 7 4.0141 4.6144 -4.1972 14 6 3.2045 4.2122 -5.3551 15 6 4.0717 4.1789 -6.5871 16 8 5.2485 4.4618 -6.5082 17 7 3.5399 3.8337 -7.7764 18 6 4.3287 3.8039 -8.8974 19 1 5.3764 4.0566 -8.8272 20 6 3.7803 3.4486 -10.1236 21 7 2.5054 3.1416 -10.2090 22 14 4.8552 3.4072 -11.6507 23 1 5.4464 2.0536 -11.8034 24 1 4.0314 3.7251 -12.8447 25 1 5.9424 4.4102 -11.5181 26 6 3.1677 4.7811 -2.9880 27 6 4.1500 4.6649 -1.8037 28 6 4.5807 6.0358 -1.2783 29 6 3.5386 3.7891 -0.6976 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 2.9595 1.1358 1.9264 34 1 2.5672 2.8037 1.4442 35 1 1.2744 1.7061 1.9846 36 1 5.5422 1.6929 -2.2206 37 1 6.0967 2.5751 -0.7696 38 1 5.8626 3.5955 -4.4569 39 1 4.5079 2.5655 -3.9035 40 1 2.7853 3.2215 -5.1789 41 1 2.3957 4.9285 -5.4993 42 1 2.5988 3.6071 -7.8394 43 1 2.1224 2.8939 -11.0651 44 1 2.4174 3.9920 -2.9379 45 1 2.6902 5.7609 -2.9908 46 1 5.0368 6.6078 -2.0864 47 1 5.3033 5.9055 -0.4726 48 1 3.7090 6.5708 -0.9015 49 1 3.8690 4.1376 0.2809 50 1 2.4506 3.8166 -0.7574 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101146644.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:06 Heat of formation + Delta-G solvation = -96.853256 kcal Electronic energy + Delta-G solvation = -30914.482057 eV Core-core repulsion = 26749.205494 eV Total energy + Delta-G solvation = -4165.276563 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.08950 -39.49109 -38.15499 -37.56560 -35.64780 -33.88809 -32.90369 -32.30543 -31.24432 -30.71810 -27.81244 -27.18799 -26.83339 -26.12582 -25.02364 -24.07570 -22.57785 -21.15410 -19.85775 -19.38430 -19.02728 -17.83166 -17.62934 -16.87464 -16.39167 -15.98035 -15.67160 -15.48652 -15.10221 -15.02924 -14.72411 -14.32764 -14.18068 -13.92712 -13.82112 -13.61836 -13.37060 -13.15265 -13.08024 -12.74183 -12.67699 -12.50696 -12.30234 -12.06779 -12.03441 -11.77516 -11.58122 -11.50357 -11.42703 -11.19195 -11.00174 -10.84628 -10.69346 -10.61604 -10.37472 -10.31420 -10.20062 -9.72364 -9.47370 -8.93422 -8.50249 -8.02376 -7.92832 -6.39838 -3.80526 2.38893 2.43247 3.19299 3.27730 3.33545 3.54220 3.91049 3.94076 4.01989 4.20710 4.29573 4.38217 4.45404 4.58065 4.61941 4.89708 4.91842 4.97122 5.02718 5.03734 5.09799 5.12938 5.14230 5.25884 5.26513 5.35329 5.37526 5.38501 5.51542 5.57466 5.63094 5.67911 5.70266 5.77896 5.83241 5.86054 5.87339 6.03517 6.09531 6.23278 6.28068 6.43630 6.68256 7.07537 7.19279 7.26547 7.56936 7.95794 8.07925 8.63603 9.20036 9.56319 10.08125 10.78075 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013616 B = 0.002717 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.975998 B =10301.841405 C =11390.457927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.074 3.926 4 H 0.084 0.916 5 C -0.169 4.169 6 C 0.533 3.467 7 O -0.516 6.516 8 N -0.617 5.617 9 C 0.109 3.891 10 C -0.096 4.096 11 H 0.105 0.895 12 C 0.045 3.955 13 N -0.480 5.480 14 C 0.034 3.966 15 C 0.446 3.554 16 O -0.577 6.577 17 N -0.565 5.565 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C 0.041 3.959 27 C -0.073 4.073 28 C -0.126 4.126 29 C 0.108 3.892 30 H 0.043 0.957 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.101 0.899 39 H 0.040 0.960 40 H 0.048 0.952 41 H 0.089 0.911 42 H 0.391 0.609 43 H 0.271 0.729 44 H 0.039 0.961 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.057 0.943 48 H 0.058 0.942 49 H 0.078 0.922 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.924 2.191 24.791 25.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.013 3.987 4 H 0.102 0.898 5 C -0.227 4.227 6 C 0.320 3.680 7 O -0.390 6.390 8 N -0.353 5.353 9 C -0.013 4.013 10 C -0.115 4.115 11 H 0.123 0.877 12 C -0.083 4.083 13 N -0.203 5.203 14 C -0.097 4.097 15 C 0.231 3.769 16 O -0.461 6.461 17 N -0.202 5.202 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.087 4.087 27 C -0.075 4.075 28 C -0.184 4.184 29 C -0.015 4.015 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.120 0.880 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.107 0.893 42 H 0.224 0.776 43 H 0.081 0.919 44 H 0.058 0.942 45 H 0.102 0.898 46 H 0.091 0.909 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.096 0.904 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.685 1.947 24.323 24.677 hybrid contribution -0.989 -0.713 -0.744 1.429 sum -4.674 1.233 23.579 24.069 Atomic orbital electron populations 1.22903 0.80411 1.03424 1.00096 1.88052 1.19811 1.25004 1.94928 1.21862 0.93276 0.86904 0.96707 0.89797 1.22224 1.03589 1.02072 0.94798 1.19992 0.86050 0.82614 0.79300 1.90751 1.68251 1.28796 1.51204 1.48601 1.18817 1.05432 1.62462 1.22114 0.83498 0.98558 0.97167 1.22840 0.99050 0.94441 0.95190 0.87714 1.23243 0.98536 0.92506 0.94014 1.65160 1.13104 1.40421 1.01620 1.22056 0.96197 0.99709 0.91775 1.19656 0.88748 0.84333 0.84153 1.90497 1.16603 1.53495 1.85521 1.41859 1.12126 1.59839 1.06376 1.19691 0.94918 1.43184 0.84922 0.87928 1.25255 0.96211 0.97184 0.99325 1.69613 1.11580 1.46502 1.26718 0.85862 0.79422 0.78725 0.80313 1.20432 1.20940 1.19402 1.23248 0.94510 1.01288 0.89654 1.22023 0.95528 0.95717 0.94219 1.21666 1.01144 0.94270 1.01281 1.22422 0.99502 0.81041 0.98510 0.93811 0.93664 0.88985 0.91133 0.90792 0.91046 0.89662 0.91283 0.88034 0.94198 0.93438 0.89321 0.77555 0.91905 0.94234 0.89835 0.90856 0.92412 0.92341 0.90435 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.82 101.05 1.09 1.31 16 2 O -0.36 -4.31 9.89 -55.03 -0.54 -4.86 16 3 C 0.07 0.73 2.49 -27.88 -0.07 0.66 16 4 H 0.08 0.66 7.07 -51.93 -0.37 0.29 16 5 C -0.17 -1.18 9.39 37.16 0.35 -0.83 16 6 C 0.53 7.09 7.22 -10.98 -0.08 7.02 16 7 O -0.52 -9.34 16.73 -14.24 -0.24 -9.58 16 8 N -0.62 -6.80 3.34 -170.93 -0.57 -7.37 16 9 C 0.11 1.25 6.31 -3.27 -0.02 1.23 16 10 C -0.10 -1.10 3.72 -88.46 -0.33 -1.43 16 11 H 0.10 1.11 7.90 -51.93 -0.41 0.70 16 12 C 0.04 0.71 5.23 -2.23 -0.01 0.70 16 13 N -0.48 -7.76 5.06 -231.55 -1.17 -8.94 16 14 C 0.03 0.62 5.30 -4.97 -0.03 0.60 16 15 C 0.45 10.63 7.58 -10.99 -0.08 10.55 16 16 O -0.58 -15.57 14.41 5.55 0.08 -15.49 16 17 N -0.57 -14.53 5.29 -10.96 -0.06 -14.59 16 18 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 19 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.87 13.05 55.50 0.72 -24.15 16 22 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 26 C 0.04 0.48 5.56 -2.24 -0.01 0.47 16 27 C -0.07 -0.69 1.07 -152.34 -0.16 -0.86 16 28 C -0.13 -0.97 8.53 37.16 0.32 -0.65 16 29 C 0.11 0.85 4.61 -2.80 -0.01 0.83 16 30 H 0.04 0.24 7.78 -51.93 -0.40 -0.16 16 31 H 0.04 0.32 8.08 -51.93 -0.42 -0.10 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.39 6.49 -51.93 -0.34 0.05 16 35 H 0.07 0.39 7.77 -51.93 -0.40 -0.01 16 36 H 0.08 1.17 7.33 -51.92 -0.38 0.79 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.10 1.92 6.90 -51.93 -0.36 1.56 16 39 H 0.04 0.68 7.21 -51.93 -0.37 0.31 16 40 H 0.05 0.82 7.88 -51.93 -0.41 0.41 16 41 H 0.09 1.44 8.13 -51.93 -0.42 1.02 16 42 H 0.39 9.67 7.90 -40.82 -0.32 9.34 16 43 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.04 0.46 7.45 -51.93 -0.39 0.07 16 45 H 0.08 0.88 7.90 -51.93 -0.41 0.47 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.08 0.45 7.50 -51.93 -0.39 0.06 16 50 H 0.07 0.49 6.61 -51.93 -0.34 0.15 16 LS Contribution 395.87 15.07 5.97 5.97 Total: -1.00 -35.39 395.87 -8.31 -43.70 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -8.19 Total: 7.45 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: 0.71 Total: 11.56 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -1.08 Total: -55.05 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.70 Total: -29.93 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.39 -8.31 -43.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101146644.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.148 kcal (2) G-P(sol) polarization free energy of solvation -35.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds