Wall clock time and date at job start Tue Mar 31 2020 22:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 113.99880 * 2 1 4 4 H 1.08999 * 109.47399 * 330.00043 * 3 2 1 5 5 C 1.53002 * 109.46960 * 90.00845 * 3 2 1 6 6 C 1.50706 * 109.46832 * 210.00357 * 3 2 1 7 7 O 1.21283 * 120.00166 * 352.43556 * 6 3 2 8 8 N 1.34782 * 119.99706 * 172.44333 * 6 3 2 9 9 C 1.47201 * 126.70329 * 175.05538 * 8 6 3 10 10 C 1.53757 * 106.40664 * 148.69450 * 9 8 6 11 11 H 1.09000 * 112.04292 * 140.94751 * 10 9 8 12 12 C 1.54307 * 109.07972 * 266.66954 * 10 9 8 13 13 N 1.48535 * 104.68842 * 136.30174 * 12 10 9 14 14 C 1.46904 * 110.99858 * 200.77119 * 13 12 10 15 15 C 1.50702 * 109.46988 * 290.12736 * 14 13 12 16 16 O 1.21288 * 119.99946 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99645 * 179.97438 * 15 14 13 18 18 C 1.37101 * 120.00120 * 179.97438 * 17 15 14 19 19 H 1.08007 * 119.99447 * 0.02562 * 18 17 15 20 20 C 1.38949 * 120.00312 * 180.02562 * 18 17 15 21 21 N 1.31410 * 119.99784 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 119.99840 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47255 * 90.00368 * 22 20 18 24 24 H 1.48503 * 109.46922 * 210.00129 * 22 20 18 25 25 H 1.48502 * 109.47470 * 330.00026 * 22 20 18 26 26 C 1.48530 * 104.20770 * 320.32022 * 13 12 10 27 27 C 1.54306 * 104.69023 * 39.67751 * 26 13 12 28 28 C 1.53005 * 112.04414 * 97.98332 * 27 26 13 29 29 C 1.48046 * 127.12428 * 356.16158 * 8 6 3 30 30 H 1.09004 * 109.46965 * 299.99456 * 1 2 3 31 31 H 1.08995 * 109.47212 * 59.99605 * 1 2 3 32 32 H 1.08994 * 109.47260 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47335 * 65.61770 * 5 3 2 34 34 H 1.09001 * 109.47019 * 185.62199 * 5 3 2 35 35 H 1.08998 * 109.46866 * 305.61761 * 5 3 2 36 36 H 1.09007 * 110.07119 * 29.45506 * 9 8 6 37 37 H 1.09005 * 110.11612 * 267.95549 * 9 8 6 38 38 H 1.08994 * 110.39699 * 255.10264 * 12 10 9 39 39 H 1.08999 * 110.39478 * 17.38590 * 12 10 9 40 40 H 1.09006 * 109.46872 * 50.12661 * 14 13 12 41 41 H 1.08997 * 109.47000 * 170.12160 * 14 13 12 42 42 H 0.97006 * 120.00019 * 0.02562 * 17 15 14 43 43 H 0.97003 * 120.00142 * 179.97438 * 21 20 18 44 44 H 1.08996 * 110.39052 * 280.87827 * 26 13 12 45 45 H 1.08998 * 110.39374 * 158.48377 * 26 13 12 46 46 H 1.09005 * 109.46950 * 302.32071 * 28 27 26 47 47 H 1.09001 * 109.46941 * 182.32280 * 28 27 26 48 48 H 1.08997 * 109.46884 * 62.32533 * 28 27 26 49 49 H 1.08998 * 111.56325 * 92.09249 * 29 8 6 50 50 H 1.09004 * 108.98090 * 330.31319 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2178 1.7713 1.4425 6 6 3.3386 1.2639 -0.7105 7 8 3.8116 0.2000 -1.0502 8 7 4.0010 2.4090 -0.9683 9 6 5.3442 2.5349 -1.5573 10 6 5.3465 3.8483 -2.3567 11 1 6.2904 4.3848 -2.2594 12 6 4.9766 3.5464 -3.8240 13 7 4.0141 4.6144 -4.1972 14 6 3.2045 4.2122 -5.3551 15 6 4.0717 4.1789 -6.5871 16 8 5.2485 4.4618 -6.5082 17 7 3.5399 3.8337 -7.7764 18 6 4.3287 3.8039 -8.8974 19 1 5.3764 4.0566 -8.8272 20 6 3.7803 3.4486 -10.1236 21 7 2.5054 3.1416 -10.2090 22 14 4.8552 3.4072 -11.6507 23 1 5.4464 2.0536 -11.8034 24 1 4.0314 3.7251 -12.8447 25 1 5.9424 4.4102 -11.5181 26 6 3.1677 4.7811 -2.9880 27 6 4.1500 4.6649 -1.8037 28 6 4.5807 6.0358 -1.2783 29 6 3.5386 3.7891 -0.6976 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 2.9595 1.1358 1.9264 34 1 2.5672 2.8037 1.4442 35 1 1.2744 1.7061 1.9846 36 1 5.5422 1.6929 -2.2206 37 1 6.0967 2.5751 -0.7696 38 1 5.8626 3.5955 -4.4569 39 1 4.5079 2.5655 -3.9035 40 1 2.7853 3.2215 -5.1789 41 1 2.3957 4.9285 -5.4993 42 1 2.5988 3.6071 -7.8394 43 1 2.1224 2.8939 -11.0651 44 1 2.4174 3.9920 -2.9379 45 1 2.6902 5.7609 -2.9908 46 1 5.0368 6.6078 -2.0864 47 1 5.3033 5.9055 -0.4726 48 1 3.7090 6.5708 -0.9015 49 1 3.8690 4.1376 0.2809 50 1 2.4506 3.8166 -0.7574 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101146644.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:05 Heat of formation + Delta-G solvation = -124.265421 kcal Electronic energy + Delta-G solvation = -30915.670738 eV Core-core repulsion = 26749.205494 eV Total energy + Delta-G solvation = -4166.465244 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.03511 -40.57917 -39.82304 -38.49758 -36.88075 -35.88893 -33.93347 -33.28022 -33.07506 -31.65183 -29.20702 -27.78720 -27.53251 -27.11475 -26.71428 -25.12670 -23.64670 -22.25346 -21.12792 -20.56477 -20.21154 -19.86313 -18.45946 -17.86461 -17.64923 -17.17433 -16.69116 -16.49382 -16.36589 -16.33471 -16.19930 -15.67231 -15.46979 -15.15719 -14.94219 -14.79597 -14.31506 -14.14971 -13.87832 -13.78839 -13.65900 -13.53817 -13.35389 -13.19391 -13.03757 -12.93448 -12.88268 -12.75981 -12.49429 -12.44122 -12.23427 -12.15466 -12.12702 -11.76737 -11.62395 -11.56496 -11.46062 -11.09354 -10.58600 -10.34613 -10.03873 -9.85431 -9.40163 -8.49152 -5.98026 1.35482 1.38934 1.44111 1.52038 1.61910 2.01940 2.26173 2.76833 2.87471 3.14218 3.19090 3.36598 3.44962 3.47104 3.76518 3.84112 3.98193 4.04324 4.13444 4.17526 4.21634 4.30152 4.38347 4.42236 4.46933 4.51476 4.52068 4.62822 4.64755 4.66814 4.70948 4.77879 4.80875 4.83328 4.91386 4.96930 5.03093 5.16434 5.19776 5.23982 5.30836 5.38033 5.54187 5.78914 5.88395 6.03864 6.05304 6.41268 6.57406 7.01884 7.10068 7.52805 8.08669 8.68539 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013616 B = 0.002717 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.975998 B =10301.841405 C =11390.457927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.400 6.400 3 C 0.075 3.925 4 H 0.110 0.890 5 C -0.161 4.161 6 C 0.522 3.478 7 O -0.582 6.582 8 N -0.614 5.614 9 C 0.110 3.890 10 C -0.087 4.087 11 H 0.115 0.885 12 C 0.048 3.952 13 N -0.497 5.497 14 C 0.048 3.952 15 C 0.441 3.559 16 O -0.614 6.614 17 N -0.576 5.576 18 C -0.333 4.333 19 H 0.078 0.922 20 C -0.014 4.014 21 N -0.922 5.922 22 Si 0.993 3.007 23 H -0.273 1.273 24 H -0.268 1.268 25 H -0.272 1.272 26 C 0.039 3.961 27 C -0.064 4.064 28 C -0.121 4.121 29 C 0.108 3.892 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.049 0.951 37 H 0.093 0.907 38 H 0.059 0.941 39 H 0.017 0.983 40 H 0.055 0.945 41 H 0.114 0.886 42 H 0.395 0.605 43 H 0.278 0.722 44 H 0.044 0.956 45 H 0.104 0.896 46 H 0.051 0.949 47 H 0.076 0.924 48 H 0.083 0.917 49 H 0.115 0.885 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.635 4.187 27.200 28.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.319 6.319 3 C 0.014 3.986 4 H 0.127 0.873 5 C -0.219 4.219 6 C 0.312 3.688 7 O -0.461 6.461 8 N -0.348 5.348 9 C -0.013 4.013 10 C -0.107 4.107 11 H 0.133 0.867 12 C -0.081 4.081 13 N -0.221 5.221 14 C -0.084 4.084 15 C 0.229 3.771 16 O -0.499 6.499 17 N -0.213 5.213 18 C -0.462 4.462 19 H 0.096 0.904 20 C -0.213 4.213 21 N -0.563 5.563 22 Si 0.817 3.183 23 H -0.198 1.198 24 H -0.193 1.193 25 H -0.196 1.196 26 C -0.088 4.088 27 C -0.065 4.065 28 C -0.178 4.178 29 C -0.014 4.014 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.110 0.890 36 H 0.068 0.932 37 H 0.111 0.889 38 H 0.077 0.923 39 H 0.035 0.965 40 H 0.073 0.927 41 H 0.132 0.868 42 H 0.228 0.772 43 H 0.087 0.913 44 H 0.063 0.937 45 H 0.122 0.878 46 H 0.070 0.930 47 H 0.095 0.905 48 H 0.102 0.898 49 H 0.133 0.867 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.434 3.991 26.761 27.597 hybrid contribution -0.442 -1.319 -1.503 2.048 sum -5.877 2.672 25.257 26.069 Atomic orbital electron populations 1.23095 0.78488 1.04195 1.01555 1.88007 1.22058 1.26641 1.95223 1.22042 0.91398 0.86802 0.98342 0.87264 1.22220 1.04304 1.02892 0.92469 1.20837 0.87141 0.82117 0.78709 1.90713 1.70046 1.31252 1.54078 1.48694 1.18331 1.06519 1.61269 1.22060 0.84875 0.97085 0.97323 1.22765 1.00772 0.95130 0.92003 0.86681 1.23068 0.96872 0.91608 0.96501 1.65116 1.14072 1.40003 1.02869 1.21900 0.95583 1.00983 0.89936 1.20712 0.88947 0.82250 0.85223 1.90470 1.18589 1.54562 1.86316 1.41942 1.12101 1.60610 1.06669 1.19654 0.94472 1.45407 0.86669 0.90356 1.26052 0.97563 0.96100 1.01621 1.69674 1.12569 1.46235 1.27775 0.84927 0.77807 0.78708 0.76897 1.19834 1.19303 1.19629 1.23442 0.94607 1.02507 0.88253 1.22058 0.93556 0.96979 0.93910 1.21649 1.02577 0.92499 1.01075 1.22722 1.00972 0.78334 0.99345 0.91185 0.93214 0.88789 0.92897 0.88265 0.89000 0.93218 0.88932 0.92258 0.96475 0.92735 0.86767 0.77161 0.91286 0.93742 0.87798 0.92971 0.90492 0.89831 0.86690 0.88256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.82 113.37 1.23 1.53 16 2 O -0.40 -9.29 9.89 -130.05 -1.29 -10.57 16 3 C 0.07 1.33 2.49 29.85 0.07 1.40 16 4 H 0.11 1.32 7.07 -2.39 -0.02 1.30 16 5 C -0.16 -1.69 9.39 71.98 0.68 -1.01 16 6 C 0.52 13.68 7.22 87.66 0.63 14.32 16 7 O -0.58 -22.19 16.73 15.89 0.27 -21.93 16 8 N -0.61 -12.52 3.34 -813.08 -2.71 -15.23 16 9 C 0.11 2.49 6.31 86.50 0.55 3.03 16 10 C -0.09 -1.94 3.72 -9.39 -0.03 -1.98 16 11 H 0.12 2.34 7.90 -2.39 -0.02 2.32 16 12 C 0.05 1.59 5.23 86.43 0.45 2.05 16 13 N -0.50 -15.97 5.06 -886.50 -4.49 -20.46 16 14 C 0.05 1.73 5.30 85.56 0.45 2.19 16 15 C 0.44 21.87 7.58 87.66 0.66 22.54 16 16 O -0.61 -34.85 14.41 -3.05 -0.04 -34.90 16 17 N -0.58 -30.69 5.29 -306.98 -1.62 -32.32 16 18 C -0.33 -19.44 9.68 84.04 0.81 -18.63 16 19 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 20 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 21 N -0.92 -50.97 13.05 21.66 0.28 -50.69 16 22 Si 0.99 44.04 29.55 68.60 2.03 46.07 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 C 0.04 0.81 5.56 86.43 0.48 1.29 16 27 C -0.06 -0.99 1.07 -50.78 -0.05 -1.05 16 28 C -0.12 -1.32 8.53 71.98 0.61 -0.70 16 29 C 0.11 1.20 4.61 86.34 0.40 1.60 16 30 H 0.07 0.56 7.78 -2.38 -0.02 0.54 16 31 H 0.05 0.61 8.08 -2.39 -0.02 0.59 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.10 0.51 6.49 -2.39 -0.02 0.49 16 35 H 0.09 0.61 7.77 -2.39 -0.02 0.59 16 36 H 0.05 1.49 7.33 -2.38 -0.02 1.47 16 37 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.06 2.45 6.90 -2.39 -0.02 2.43 16 39 H 0.02 0.63 7.21 -2.39 -0.02 0.61 16 40 H 0.05 1.91 7.88 -2.38 -0.02 1.89 16 41 H 0.11 3.56 8.13 -2.39 -0.02 3.54 16 42 H 0.39 20.06 7.90 -92.70 -0.73 19.33 16 43 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 44 H 0.04 0.90 7.45 -2.39 -0.02 0.88 16 45 H 0.10 1.77 7.90 -2.39 -0.02 1.76 16 46 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 47 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.12 0.57 7.50 -2.39 -0.02 0.55 16 50 H 0.10 0.72 6.61 -2.38 -0.02 0.70 16 Total: -1.00 -83.83 395.87 0.05 -83.78 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: 0.21 Total: 29.97 kcal Atomic # 6 Polarization: 18.87 SS G_CDS: 7.41 Total: 26.28 kcal Atomic # 7 Polarization: -110.16 SS G_CDS: -8.54 Total: -118.70 kcal Atomic # 8 Polarization: -66.34 SS G_CDS: -1.06 Total: -67.40 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -83.83 0.05 -83.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101146644.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.484 kcal (2) G-P(sol) polarization free energy of solvation -83.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds