Wall clock time and date at job start Tue Mar 31 2020 22:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99833 * 2 1 4 4 C 1.50703 * 109.46993 * 180.02562 * 3 2 1 5 5 O 1.21278 * 120.00089 * 359.97438 * 4 3 2 6 6 N 1.34772 * 119.99770 * 179.97438 * 4 3 2 7 7 C 1.46507 * 120.00100 * 179.97438 * 6 4 3 8 8 H 1.08994 * 109.46681 * 34.99959 * 7 6 4 9 9 C 1.53000 * 109.46715 * 275.00395 * 7 6 4 10 10 C 1.50694 * 109.47482 * 155.00235 * 7 6 4 11 11 O 1.21291 * 119.99956 * 20.99989 * 10 7 6 12 12 N 1.34775 * 120.00244 * 201.00438 * 10 7 6 13 13 C 1.47191 * 126.70505 * 174.80053 * 12 10 7 14 14 C 1.53737 * 106.42997 * 211.33328 * 13 12 10 15 15 H 1.09005 * 112.28855 * 104.35972 * 14 13 12 16 16 C 1.54460 * 109.01346 * 229.45741 * 14 13 12 17 17 N 1.48330 * 104.32217 * 137.35824 * 16 14 13 18 18 C 1.36937 * 128.19673 * 138.17348 * 17 16 14 19 19 H 1.08005 * 120.00223 * 197.02303 * 18 17 16 20 20 C 1.38812 * 120.00157 * 17.02494 * 18 17 16 21 21 N 1.31622 * 120.00008 * 198.44437 * 20 18 17 22 22 Si 1.86806 * 119.99884 * 18.71744 * 20 18 17 23 23 H 1.48502 * 109.46914 * 269.73004 * 22 20 18 24 24 H 1.48497 * 109.46927 * 29.72369 * 22 20 18 25 25 H 1.48497 * 109.46975 * 149.72807 * 22 20 18 26 26 C 1.48329 * 103.60643 * 318.43133 * 17 16 14 27 27 C 1.54073 * 104.51384 * 41.53533 * 26 17 16 28 28 C 1.53001 * 112.57633 * 97.44015 * 27 26 17 29 29 C 1.47190 * 126.70069 * 354.75841 * 12 10 7 30 30 H 1.09004 * 109.46756 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46739 * 299.99532 * 1 2 3 32 32 H 1.08992 * 109.47191 * 60.00338 * 1 2 3 33 33 H 1.08994 * 109.47553 * 60.00232 * 3 2 1 34 34 H 1.09004 * 109.47142 * 299.99733 * 3 2 1 35 35 H 0.97004 * 120.00783 * 0.02562 * 6 4 3 36 36 H 1.09001 * 109.47750 * 64.58943 * 9 7 6 37 37 H 1.09008 * 109.46776 * 184.58871 * 9 7 6 38 38 H 1.09002 * 109.47460 * 304.58449 * 9 7 6 39 39 H 1.09005 * 110.06665 * 92.08989 * 13 12 10 40 40 H 1.09004 * 110.11082 * 330.59967 * 13 12 10 41 41 H 1.08995 * 110.45766 * 18.64742 * 16 14 13 42 42 H 1.08997 * 110.46197 * 256.06985 * 16 14 13 43 43 H 0.96991 * 120.00046 * 355.17436 * 21 20 18 44 44 H 1.08996 * 110.46557 * 160.28139 * 26 17 16 45 45 H 1.08998 * 110.46656 * 282.86250 * 26 17 16 46 46 H 1.09004 * 109.46769 * 302.10646 * 28 27 26 47 47 H 1.08997 * 109.47388 * 62.10702 * 28 27 26 48 48 H 1.08996 * 109.46999 * 182.11022 * 28 27 26 49 49 H 1.09008 * 110.06467 * 267.90745 * 29 12 10 50 50 H 1.09001 * 110.06536 * 29.36782 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0341 0.0916 -0.0006 6 7 4.2764 2.2969 -0.0013 7 6 5.7369 2.1813 -0.0013 8 1 6.0325 1.3131 -0.5903 9 6 6.2354 2.0163 1.4358 10 6 6.3393 3.4249 -0.6024 11 8 5.6960 4.4525 -0.6415 12 7 7.5928 3.3955 -1.0966 13 6 8.2839 4.4834 -1.8075 14 6 9.2391 3.8115 -2.8074 15 1 8.8678 3.8612 -3.8311 16 6 10.6429 4.4392 -2.6619 17 7 11.5698 3.2826 -2.7200 18 6 12.7658 3.1883 -3.3801 19 1 13.2040 2.2192 -3.5680 20 6 13.4151 4.3382 -3.8078 21 7 14.3463 4.2620 -4.7349 22 14 12.9727 5.9929 -3.0621 23 1 11.8841 6.6181 -3.8555 24 1 12.5163 5.7988 -1.6624 25 1 14.1658 6.8769 -3.0758 26 6 10.8914 2.2503 -1.8989 27 6 9.4064 2.3553 -2.2961 28 6 9.0046 1.3180 -3.3465 29 6 8.5384 2.2695 -1.0301 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8899 33 1 1.6887 1.8464 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.8593 3.1726 -0.0009 36 1 5.8654 1.0754 1.8431 37 1 7.3254 2.0122 1.4440 38 1 5.8707 2.8440 2.0441 39 1 8.8491 5.0918 -1.1014 40 1 7.5611 5.1024 -2.3390 41 1 10.7333 4.9524 -1.7046 42 1 10.8398 5.1270 -3.4842 43 1 14.6283 3.3962 -5.0690 44 1 11.2789 1.2595 -2.1360 45 1 11.0157 2.4650 -0.8375 46 1 9.6285 1.4374 -4.2323 47 1 9.1404 0.3164 -2.9387 48 1 7.9585 1.4614 -3.6170 49 1 9.1634 2.3580 -0.1414 50 1 7.9945 1.3250 -1.0119 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101247957.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:09 Heat of formation + Delta-G solvation = -74.204449 kcal Electronic energy + Delta-G solvation = -30679.712630 eV Core-core repulsion = 26515.418192 eV Total energy + Delta-G solvation = -4164.294437 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.92994 -40.04425 -38.79858 -37.76548 -35.38792 -35.20722 -32.85975 -31.84904 -31.36723 -30.15881 -28.86248 -26.86834 -26.34553 -25.94283 -25.76639 -24.01786 -22.03687 -20.92584 -20.85533 -19.65510 -18.84956 -18.16130 -17.41757 -17.13991 -16.78109 -16.68886 -16.07820 -15.86117 -15.39726 -15.20531 -14.89182 -14.54908 -14.42828 -14.17858 -13.89401 -13.50231 -13.43362 -13.23467 -13.08963 -12.86309 -12.63963 -12.56202 -12.43437 -12.33227 -12.00100 -11.91879 -11.79835 -11.43343 -11.22824 -10.98692 -10.75943 -10.53031 -10.40729 -10.27236 -10.17615 -10.04942 -9.94460 -9.61624 -9.48476 -9.21122 -8.80924 -8.69314 -7.20858 -6.35087 -3.30345 2.13181 2.26541 2.42488 2.92210 3.35127 3.47168 3.62311 3.64165 4.12375 4.33423 4.51105 4.53736 4.61842 4.65556 4.69347 4.77651 4.78097 4.86774 4.91413 4.97977 5.14032 5.21411 5.22320 5.28328 5.34381 5.38958 5.43645 5.52543 5.55280 5.70411 5.80691 5.84322 5.86516 5.93469 6.03834 6.05690 6.16115 6.32161 6.36020 6.38876 6.49269 6.56892 6.61731 6.66769 7.11439 7.38040 7.53943 7.82784 7.89355 8.25354 8.95605 9.48601 10.22925 11.12254 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026628 B = 0.002383 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.283434 B =11748.329411 C =12158.329251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.045 3.955 4 C 0.517 3.483 5 O -0.517 6.517 6 N -0.714 5.714 7 C 0.131 3.869 8 H 0.112 0.888 9 C -0.158 4.158 10 C 0.529 3.471 11 O -0.544 6.544 12 N -0.606 5.606 13 C 0.111 3.889 14 C -0.108 4.108 15 H 0.091 0.909 16 C 0.109 3.891 17 N -0.603 5.603 18 C -0.317 4.317 19 H 0.076 0.924 20 C -0.022 4.022 21 N -0.925 5.925 22 Si 1.066 2.934 23 H -0.294 1.294 24 H -0.284 1.284 25 H -0.299 1.299 26 C 0.138 3.862 27 C -0.085 4.085 28 C -0.122 4.122 29 C 0.104 3.896 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.411 0.589 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.040 0.960 42 H 0.068 0.932 43 H 0.262 0.738 44 H 0.056 0.944 45 H 0.031 0.969 46 H 0.067 0.933 47 H 0.054 0.946 48 H 0.048 0.952 49 H 0.078 0.922 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.847 -4.497 11.299 27.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.035 4.035 4 C 0.302 3.698 5 O -0.391 6.391 6 N -0.370 5.370 7 C 0.023 3.977 8 H 0.130 0.870 9 C -0.217 4.217 10 C 0.317 3.683 11 O -0.422 6.422 12 N -0.339 5.339 13 C -0.011 4.011 14 C -0.129 4.129 15 H 0.109 0.891 16 C -0.017 4.017 17 N -0.327 5.327 18 C -0.444 4.444 19 H 0.094 0.906 20 C -0.222 4.222 21 N -0.565 5.565 22 Si 0.898 3.102 23 H -0.222 1.222 24 H -0.210 1.210 25 H -0.227 1.227 26 C 0.011 3.989 27 C -0.088 4.088 28 C -0.180 4.180 29 C -0.019 4.019 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.248 0.752 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.057 0.943 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.049 0.951 46 H 0.086 0.914 47 H 0.073 0.927 48 H 0.067 0.933 49 H 0.096 0.904 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -24.302 -3.332 11.154 26.946 hybrid contribution -0.687 -0.935 0.063 1.162 sum -24.989 -4.267 11.218 27.722 Atomic orbital electron populations 1.22855 0.80172 1.03445 1.00218 1.88018 1.19934 1.25026 1.95454 1.22195 0.91193 0.87165 1.02979 1.20248 0.88783 0.84309 0.76437 1.90748 1.74492 1.26348 1.47534 1.45667 1.05499 1.09776 1.76095 1.20718 0.80839 0.97298 0.98854 0.87000 1.22106 1.02182 1.03541 0.93873 1.20101 0.80415 0.89738 0.78065 1.90685 1.60682 1.32884 1.57990 1.48538 1.12627 1.16986 1.55705 1.22243 0.94832 0.89621 0.94404 1.23093 0.96624 0.94573 0.98570 0.89063 1.22349 0.87643 0.92107 0.99639 1.45415 1.20211 1.10497 1.56604 1.20067 0.96043 0.95183 1.33134 0.90598 1.25955 0.96561 1.02121 0.97544 1.70903 1.33413 1.27036 1.25191 0.83770 0.74667 0.75712 0.76067 1.22236 1.20997 1.22651 1.21793 0.88726 0.94464 0.93946 1.22283 0.97204 0.95383 0.93885 1.21609 1.00484 0.97156 0.98713 1.22471 0.91116 0.89299 0.98966 0.88973 0.93732 0.93687 0.89956 0.89937 0.75246 0.90572 0.90658 0.91524 0.90830 0.90386 0.94254 0.91422 0.92726 0.92517 0.95118 0.91438 0.92652 0.93297 0.90396 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.37 -3.62 10.24 -55.14 -0.56 -4.18 16 3 C 0.04 0.34 6.42 36.01 0.23 0.57 16 4 C 0.52 5.54 7.87 -10.99 -0.09 5.45 16 5 O -0.52 -7.67 16.16 -14.35 -0.23 -7.90 16 6 N -0.71 -6.87 5.04 -54.93 -0.28 -7.15 16 7 C 0.13 1.39 2.35 -69.08 -0.16 1.23 16 8 H 0.11 1.26 6.41 -51.93 -0.33 0.93 16 9 C -0.16 -1.45 9.45 37.16 0.35 -1.10 16 10 C 0.53 6.76 7.11 -10.99 -0.08 6.69 16 11 O -0.54 -8.21 16.21 5.55 0.09 -8.12 16 12 N -0.61 -7.85 3.32 -171.66 -0.57 -8.42 16 13 C 0.11 1.58 6.52 -3.28 -0.02 1.56 16 14 C -0.11 -1.72 3.73 -88.29 -0.33 -2.05 16 15 H 0.09 1.46 7.95 -51.93 -0.41 1.05 16 16 C 0.11 2.17 4.24 -2.27 -0.01 2.16 16 17 N -0.60 -13.75 3.20 -168.71 -0.54 -14.29 16 18 C -0.32 -8.66 10.65 -15.06 -0.16 -8.82 16 19 H 0.08 2.20 8.06 -52.48 -0.42 1.78 16 20 C -0.02 -0.62 5.48 -17.43 -0.10 -0.71 16 21 N -0.92 -28.34 13.70 55.49 0.76 -27.58 16 22 Si 1.07 25.83 24.92 -169.99 -4.24 21.60 16 23 H -0.29 -6.73 6.56 56.52 0.37 -6.36 16 24 H -0.28 -6.43 6.15 56.52 0.35 -6.08 16 25 H -0.30 -7.42 7.11 56.52 0.40 -7.01 16 26 C 0.14 2.48 6.38 -2.47 -0.02 2.46 16 27 C -0.08 -1.25 1.07 -152.38 -0.16 -1.42 16 28 C -0.12 -1.69 8.60 37.16 0.32 -1.37 16 29 C 0.10 1.25 5.50 -3.28 -0.02 1.24 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.41 3.41 7.75 -40.82 -0.32 3.09 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.64 7.56 -51.92 -0.39 0.24 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 1.05 7.10 -51.93 -0.37 0.68 16 40 H 0.08 1.10 7.98 -51.93 -0.41 0.68 16 41 H 0.04 0.77 5.97 -51.93 -0.31 0.46 16 42 H 0.07 1.47 4.93 -51.93 -0.26 1.21 16 43 H 0.26 7.96 8.73 -40.82 -0.36 7.61 16 44 H 0.06 1.02 7.92 -51.93 -0.41 0.61 16 45 H 0.03 0.53 7.16 -51.93 -0.37 0.16 16 46 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 47 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.08 0.89 7.11 -51.92 -0.37 0.52 16 50 H 0.08 0.80 6.43 -51.93 -0.33 0.47 16 LS Contribution 391.45 15.07 5.90 5.90 Total: -1.00 -34.89 391.45 -6.97 -41.87 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -8.18 Total: 1.12 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 0.87 Total: 7.16 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.63 Total: -57.44 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.71 Total: -20.20 kcal Atomic # 14 Polarization: 25.83 SS G_CDS: -4.24 Total: 21.60 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.89 -6.97 -41.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101247957.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.338 kcal (2) G-P(sol) polarization free energy of solvation -34.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds