Wall clock time and date at job start Tue Mar 31 2020 22:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99833 * 2 1 4 4 C 1.50703 * 109.46993 * 180.02562 * 3 2 1 5 5 O 1.21278 * 120.00089 * 359.97438 * 4 3 2 6 6 N 1.34772 * 119.99770 * 179.97438 * 4 3 2 7 7 C 1.46507 * 120.00100 * 179.97438 * 6 4 3 8 8 H 1.08994 * 109.46681 * 34.99959 * 7 6 4 9 9 C 1.53000 * 109.46715 * 275.00395 * 7 6 4 10 10 C 1.50694 * 109.47482 * 155.00235 * 7 6 4 11 11 O 1.21291 * 119.99956 * 20.99989 * 10 7 6 12 12 N 1.34775 * 120.00244 * 201.00438 * 10 7 6 13 13 C 1.47191 * 126.70505 * 174.80053 * 12 10 7 14 14 C 1.53737 * 106.42997 * 211.33328 * 13 12 10 15 15 H 1.09005 * 112.28855 * 104.35972 * 14 13 12 16 16 C 1.54460 * 109.01346 * 229.45741 * 14 13 12 17 17 N 1.48330 * 104.32217 * 137.35824 * 16 14 13 18 18 C 1.36937 * 128.19673 * 138.17348 * 17 16 14 19 19 H 1.08005 * 120.00223 * 197.02303 * 18 17 16 20 20 C 1.38812 * 120.00157 * 17.02494 * 18 17 16 21 21 N 1.31622 * 120.00008 * 198.44437 * 20 18 17 22 22 Si 1.86806 * 119.99884 * 18.71744 * 20 18 17 23 23 H 1.48502 * 109.46914 * 269.73004 * 22 20 18 24 24 H 1.48497 * 109.46927 * 29.72369 * 22 20 18 25 25 H 1.48497 * 109.46975 * 149.72807 * 22 20 18 26 26 C 1.48329 * 103.60643 * 318.43133 * 17 16 14 27 27 C 1.54073 * 104.51384 * 41.53533 * 26 17 16 28 28 C 1.53001 * 112.57633 * 97.44015 * 27 26 17 29 29 C 1.47190 * 126.70069 * 354.75841 * 12 10 7 30 30 H 1.09004 * 109.46756 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46739 * 299.99532 * 1 2 3 32 32 H 1.08992 * 109.47191 * 60.00338 * 1 2 3 33 33 H 1.08994 * 109.47553 * 60.00232 * 3 2 1 34 34 H 1.09004 * 109.47142 * 299.99733 * 3 2 1 35 35 H 0.97004 * 120.00783 * 0.02562 * 6 4 3 36 36 H 1.09001 * 109.47750 * 64.58943 * 9 7 6 37 37 H 1.09008 * 109.46776 * 184.58871 * 9 7 6 38 38 H 1.09002 * 109.47460 * 304.58449 * 9 7 6 39 39 H 1.09005 * 110.06665 * 92.08989 * 13 12 10 40 40 H 1.09004 * 110.11082 * 330.59967 * 13 12 10 41 41 H 1.08995 * 110.45766 * 18.64742 * 16 14 13 42 42 H 1.08997 * 110.46197 * 256.06985 * 16 14 13 43 43 H 0.96991 * 120.00046 * 355.17436 * 21 20 18 44 44 H 1.08996 * 110.46557 * 160.28139 * 26 17 16 45 45 H 1.08998 * 110.46656 * 282.86250 * 26 17 16 46 46 H 1.09004 * 109.46769 * 302.10646 * 28 27 26 47 47 H 1.08997 * 109.47388 * 62.10702 * 28 27 26 48 48 H 1.08996 * 109.46999 * 182.11022 * 28 27 26 49 49 H 1.09008 * 110.06467 * 267.90745 * 29 12 10 50 50 H 1.09001 * 110.06536 * 29.36782 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0341 0.0916 -0.0006 6 7 4.2764 2.2969 -0.0013 7 6 5.7369 2.1813 -0.0013 8 1 6.0325 1.3131 -0.5903 9 6 6.2354 2.0163 1.4358 10 6 6.3393 3.4249 -0.6024 11 8 5.6960 4.4525 -0.6415 12 7 7.5928 3.3955 -1.0966 13 6 8.2839 4.4834 -1.8075 14 6 9.2391 3.8115 -2.8074 15 1 8.8678 3.8612 -3.8311 16 6 10.6429 4.4392 -2.6619 17 7 11.5698 3.2826 -2.7200 18 6 12.7658 3.1883 -3.3801 19 1 13.2040 2.2192 -3.5680 20 6 13.4151 4.3382 -3.8078 21 7 14.3463 4.2620 -4.7349 22 14 12.9727 5.9929 -3.0621 23 1 11.8841 6.6181 -3.8555 24 1 12.5163 5.7988 -1.6624 25 1 14.1658 6.8769 -3.0758 26 6 10.8914 2.2503 -1.8989 27 6 9.4064 2.3553 -2.2961 28 6 9.0046 1.3180 -3.3465 29 6 8.5384 2.2695 -1.0301 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8899 33 1 1.6887 1.8464 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.8593 3.1726 -0.0009 36 1 5.8654 1.0754 1.8431 37 1 7.3254 2.0122 1.4440 38 1 5.8707 2.8440 2.0441 39 1 8.8491 5.0918 -1.1014 40 1 7.5611 5.1024 -2.3390 41 1 10.7333 4.9524 -1.7046 42 1 10.8398 5.1270 -3.4842 43 1 14.6283 3.3962 -5.0690 44 1 11.2789 1.2595 -2.1360 45 1 11.0157 2.4650 -0.8375 46 1 9.6285 1.4374 -4.2323 47 1 9.1404 0.3164 -2.9387 48 1 7.9585 1.4614 -3.6170 49 1 9.1634 2.3580 -0.1414 50 1 7.9945 1.3250 -1.0119 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101247957.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:08 Heat of formation + Delta-G solvation = -100.388005 kcal Electronic energy + Delta-G solvation = -30680.848034 eV Core-core repulsion = 26515.418192 eV Total energy + Delta-G solvation = -4165.429842 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.97735 -40.99939 -39.87162 -38.41289 -36.82198 -36.09208 -34.57882 -32.97260 -32.72320 -31.45170 -29.43781 -28.09034 -27.37634 -27.16027 -26.80164 -25.07981 -23.34354 -22.56968 -21.68245 -20.67879 -20.15560 -19.41733 -18.90588 -17.92561 -17.70539 -17.28598 -17.20657 -16.70050 -16.59690 -16.18247 -15.99727 -15.85993 -15.59936 -15.22867 -15.17064 -15.03579 -14.58565 -14.30590 -14.11725 -13.88434 -13.74465 -13.59556 -13.39718 -13.14419 -13.08506 -12.98295 -12.77002 -12.63765 -12.61035 -12.35174 -12.13131 -11.96755 -11.69581 -11.63955 -11.35873 -11.15121 -11.06087 -10.97072 -10.77099 -10.74142 -10.32803 -9.83023 -9.17844 -8.57509 -5.45463 1.25980 1.40586 1.48902 1.52616 1.54156 1.70374 2.04532 2.54460 3.08398 3.09570 3.14459 3.24038 3.45260 3.65695 3.74133 3.79847 3.98489 3.99197 4.08030 4.14483 4.19615 4.24094 4.26633 4.34643 4.51731 4.53973 4.58565 4.58692 4.65261 4.72160 4.73864 4.75907 4.81638 4.88847 4.89947 4.95259 5.09556 5.10376 5.12485 5.20486 5.21320 5.25356 5.38768 5.59169 6.01237 6.09775 6.36704 6.41793 6.80764 6.87096 7.09382 7.44256 8.19979 8.90146 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026628 B = 0.002383 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.283434 B =11748.329411 C =12158.329251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.045 3.955 4 C 0.515 3.485 5 O -0.564 6.564 6 N -0.706 5.706 7 C 0.134 3.866 8 H 0.109 0.891 9 C -0.153 4.153 10 C 0.534 3.466 11 O -0.567 6.567 12 N -0.606 5.606 13 C 0.118 3.882 14 C -0.101 4.101 15 H 0.088 0.912 16 C 0.104 3.896 17 N -0.628 5.628 18 C -0.297 4.297 19 H 0.043 0.957 20 C -0.082 4.082 21 N -0.965 5.965 22 Si 1.104 2.896 23 H -0.276 1.276 24 H -0.257 1.257 25 H -0.310 1.310 26 C 0.135 3.865 27 C -0.078 4.078 28 C -0.118 4.118 29 C 0.111 3.889 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.419 0.581 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.053 0.947 42 H 0.048 0.952 43 H 0.247 0.753 44 H 0.049 0.951 45 H 0.050 0.950 46 H 0.037 0.963 47 H 0.073 0.927 48 H 0.062 0.938 49 H 0.093 0.907 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.117 -4.015 13.492 31.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C -0.034 4.034 4 C 0.302 3.698 5 O -0.442 6.442 6 N -0.362 5.362 7 C 0.025 3.975 8 H 0.126 0.874 9 C -0.211 4.211 10 C 0.322 3.678 11 O -0.446 6.446 12 N -0.337 5.337 13 C -0.005 4.005 14 C -0.122 4.122 15 H 0.107 0.893 16 C -0.021 4.021 17 N -0.354 5.354 18 C -0.425 4.425 19 H 0.061 0.939 20 C -0.275 4.275 21 N -0.609 5.609 22 Si 0.931 3.069 23 H -0.202 1.202 24 H -0.182 1.182 25 H -0.239 1.239 26 C 0.009 3.991 27 C -0.080 4.080 28 C -0.175 4.175 29 C -0.012 4.012 30 H 0.113 0.887 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.130 0.870 34 H 0.124 0.876 35 H 0.257 0.743 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.057 0.943 47 H 0.091 0.909 48 H 0.081 0.919 49 H 0.111 0.889 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -27.643 -2.858 13.381 30.844 hybrid contribution 0.274 -1.192 -0.619 1.371 sum -27.369 -4.051 12.762 30.469 Atomic orbital electron populations 1.23037 0.78225 1.04190 1.01669 1.87959 1.22160 1.26540 1.95811 1.22344 0.88666 0.86908 1.05481 1.20876 0.90202 0.83586 0.75115 1.90724 1.75540 1.28027 1.49916 1.45647 1.05152 1.10057 1.75387 1.20702 0.81420 0.95790 0.99544 0.87359 1.22074 1.02809 1.03531 0.92711 1.20387 0.79919 0.89985 0.77477 1.90681 1.61114 1.33924 1.58885 1.48498 1.12854 1.16774 1.55601 1.22078 0.94562 0.89783 0.94099 1.22947 0.94707 0.95239 0.99318 0.89323 1.22462 0.89061 0.91184 0.99373 1.45461 1.19532 1.12906 1.57478 1.19907 0.97274 0.93635 1.31726 0.93864 1.27170 0.96694 1.05819 0.97842 1.71017 1.35984 1.26060 1.27871 0.83297 0.74590 0.72020 0.76994 1.20241 1.18151 1.23932 1.22019 0.90108 0.92812 0.94119 1.22184 0.95529 0.94848 0.95459 1.21567 1.00623 0.97944 0.97362 1.22458 0.90947 0.90094 0.97668 0.88746 0.92069 0.92370 0.86973 0.87588 0.74304 0.90859 0.89636 0.91086 0.90366 0.90157 0.92955 0.93380 0.94400 0.93201 0.93255 0.94330 0.90852 0.91889 0.88888 0.88093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 11.01 113.37 1.25 1.46 16 2 O -0.41 -7.29 10.24 -129.94 -1.33 -8.62 16 3 C 0.05 0.56 6.42 71.24 0.46 1.01 16 4 C 0.51 9.99 7.87 87.66 0.69 10.68 16 5 O -0.56 -16.10 16.16 16.01 0.26 -15.84 16 6 N -0.71 -11.76 5.04 -446.10 -2.25 -14.01 16 7 C 0.13 2.46 2.35 44.24 0.10 2.56 16 8 H 0.11 2.13 6.41 -2.39 -0.02 2.11 16 9 C -0.15 -2.33 9.45 71.98 0.68 -1.65 16 10 C 0.53 11.91 7.11 87.66 0.62 12.54 16 11 O -0.57 -15.42 16.21 -3.06 -0.05 -15.47 16 12 N -0.61 -13.53 3.32 -815.40 -2.71 -16.24 16 13 C 0.12 2.97 6.52 86.50 0.56 3.53 16 14 C -0.10 -3.02 3.73 -9.28 -0.03 -3.05 16 15 H 0.09 2.70 7.95 -2.38 -0.02 2.68 16 16 C 0.10 3.99 4.24 86.52 0.37 4.36 16 17 N -0.63 -28.31 3.20 -687.68 -2.20 -30.51 16 18 C -0.30 -16.61 10.65 84.03 0.89 -15.72 16 19 H 0.04 2.64 8.06 -2.91 -0.02 2.62 16 20 C -0.08 -4.81 5.48 84.86 0.47 -4.35 16 21 N -0.96 -61.57 13.70 21.65 0.30 -61.27 16 22 Si 1.10 52.29 24.92 68.60 1.71 54.00 16 23 H -0.28 -12.08 6.56 99.48 0.65 -11.42 16 24 H -0.26 -10.86 6.15 99.48 0.61 -10.25 16 25 H -0.31 -15.20 7.11 99.48 0.71 -14.49 16 26 C 0.13 4.61 6.38 86.39 0.55 5.17 16 27 C -0.08 -2.10 1.07 -50.80 -0.05 -2.15 16 28 C -0.12 -3.02 8.60 71.98 0.62 -2.40 16 29 C 0.11 2.23 5.50 86.50 0.48 2.71 16 30 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.42 5.74 7.75 -92.71 -0.72 5.02 16 36 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.08 1.12 7.56 -2.38 -0.02 1.11 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 1.94 7.10 -2.38 -0.02 1.92 16 40 H 0.08 2.03 7.98 -2.39 -0.02 2.01 16 41 H 0.05 1.89 5.97 -2.39 -0.01 1.87 16 42 H 0.05 2.03 4.93 -2.39 -0.01 2.02 16 43 H 0.25 15.85 8.73 -92.71 -0.81 15.04 16 44 H 0.05 1.75 7.92 -2.39 -0.02 1.73 16 45 H 0.05 1.54 7.16 -2.39 -0.02 1.52 16 46 H 0.04 1.20 8.14 -2.39 -0.02 1.19 16 47 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.09 1.68 7.11 -2.38 -0.02 1.66 16 50 H 0.10 1.64 6.43 -2.39 -0.02 1.63 16 Total: -1.00 -78.72 391.45 1.42 -77.30 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.04 Total: 15.96 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 7.65 Total: 14.71 kcal Atomic # 7 Polarization: -115.17 SS G_CDS: -6.86 Total: -122.03 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -1.12 Total: -39.93 kcal Atomic # 14 Polarization: 52.29 SS G_CDS: 1.71 Total: 54.00 kcal Total: -78.72 1.42 -77.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101247957.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.091 kcal (2) G-P(sol) polarization free energy of solvation -78.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds