Wall clock time and date at job start Tue Mar 31 2020 22:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00120 * 2 1 4 4 C 1.50700 * 109.47223 * 180.02562 * 3 2 1 5 5 O 1.21288 * 119.99590 * 359.97438 * 4 3 2 6 6 N 1.34770 * 120.00425 * 180.02562 * 4 3 2 7 7 C 1.46497 * 120.00596 * 179.97438 * 6 4 3 8 8 H 1.08998 * 109.46986 * 325.00358 * 7 6 4 9 9 C 1.53005 * 109.46825 * 85.00048 * 7 6 4 10 10 C 1.50700 * 109.47549 * 204.99998 * 7 6 4 11 11 O 1.21282 * 119.99597 * 0.02562 * 10 7 6 12 12 N 1.34766 * 120.00142 * 180.02562 * 10 7 6 13 13 C 1.47195 * 126.70270 * 0.02562 * 12 10 7 14 14 C 1.53747 * 106.43209 * 211.35030 * 13 12 10 15 15 H 1.09002 * 112.71903 * 104.04496 * 14 13 12 16 16 C 1.54452 * 109.01605 * 229.45720 * 14 13 12 17 17 N 1.48334 * 104.32223 * 137.35943 * 16 14 13 18 18 C 1.36933 * 128.19972 * 138.19570 * 17 16 14 19 19 H 1.08003 * 120.00085 * 344.10376 * 18 17 16 20 20 C 1.38811 * 120.00162 * 164.10185 * 18 17 16 21 21 N 1.31620 * 120.00070 * 350.53512 * 20 18 17 22 22 Si 1.86797 * 120.00012 * 170.53304 * 20 18 17 23 23 H 1.48501 * 109.47358 * 60.00382 * 22 20 18 24 24 H 1.48504 * 109.47141 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47328 * 299.99954 * 22 20 18 26 26 C 1.48334 * 103.60333 * 318.18929 * 17 16 14 27 27 C 1.54456 * 104.32465 * 41.81078 * 26 17 16 28 28 C 1.53006 * 112.29740 * 96.98233 * 27 26 17 29 29 C 1.47194 * 126.70591 * 180.02562 * 12 10 7 30 30 H 1.09003 * 109.47369 * 59.99816 * 1 2 3 31 31 H 1.08999 * 109.47451 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47016 * 300.00158 * 1 2 3 33 33 H 1.08998 * 109.46846 * 59.99899 * 3 2 1 34 34 H 1.09001 * 109.46987 * 300.00039 * 3 2 1 35 35 H 0.97006 * 119.99195 * 359.97438 * 6 4 3 36 36 H 1.08993 * 109.47164 * 59.99636 * 9 7 6 37 37 H 1.09003 * 109.46785 * 180.02562 * 9 7 6 38 38 H 1.09006 * 109.46659 * 300.00123 * 9 7 6 39 39 H 1.09003 * 110.06650 * 92.10760 * 13 12 10 40 40 H 1.08999 * 110.07038 * 330.59108 * 13 12 10 41 41 H 1.08997 * 110.46009 * 256.06893 * 16 14 13 42 42 H 1.08998 * 110.46335 * 18.52305 * 16 14 13 43 43 H 0.97006 * 119.99891 * 179.97438 * 21 20 18 44 44 H 1.09002 * 110.46376 * 160.51785 * 26 17 16 45 45 H 1.08998 * 110.46815 * 283.10005 * 26 17 16 46 46 H 1.09002 * 109.47320 * 302.35305 * 28 27 26 47 47 H 1.08995 * 109.46679 * 62.35420 * 28 27 26 48 48 H 1.09003 * 109.46344 * 182.35089 * 28 27 26 49 49 H 1.09000 * 110.06681 * 29.40646 * 29 12 10 50 50 H 1.08999 * 110.11308 * 267.91373 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1865 -0.0006 5 8 4.0341 0.0914 -0.0006 6 7 4.2765 2.2967 -0.0002 7 6 5.7369 2.1810 -0.0003 8 1 6.0327 1.3129 0.5888 9 6 6.2354 2.0160 -1.4374 10 6 6.3395 3.4248 0.6006 11 8 5.6197 4.3195 0.9910 12 7 7.6779 3.5428 0.7042 13 6 8.6836 2.5551 0.2804 14 6 9.8742 2.7068 1.2413 15 1 9.9207 1.9096 1.9832 16 6 11.1755 2.8168 0.4167 17 7 11.9436 3.8954 1.0854 18 6 13.2847 3.9353 1.3591 19 1 13.8711 3.0291 1.3197 20 6 13.8906 5.1403 1.6870 21 7 13.2258 6.2686 1.5552 22 14 15.6495 5.1607 2.3156 23 1 16.5488 4.5748 1.2894 24 1 16.0600 6.5608 2.5928 25 1 15.7380 4.3630 3.5650 26 6 10.9149 4.9206 1.3872 27 6 9.7006 4.1077 1.8876 28 6 9.6355 4.0418 3.4148 29 6 8.4198 4.6846 1.2633 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8593 3.1724 0.0001 36 1 5.9396 2.8840 -2.0265 37 1 7.3220 1.9295 -1.4374 38 1 5.7995 1.1163 -1.8720 39 1 9.0003 2.7591 -0.7425 40 1 8.2720 1.5483 0.3512 41 1 11.7284 1.8781 0.4505 42 1 10.9513 3.0891 -0.6146 43 1 13.6491 7.1107 1.7847 44 1 11.2678 5.5967 2.1660 45 1 10.6559 5.4773 0.4867 46 1 10.5576 3.6058 3.7993 47 1 9.5139 5.0475 3.8169 48 1 8.7887 3.4251 3.7160 49 1 7.8220 5.1808 2.0278 50 1 8.6745 5.3897 0.4721 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101247958.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:13 Heat of formation + Delta-G solvation = -75.007876 kcal Electronic energy + Delta-G solvation = -30509.042438 eV Core-core repulsion = 26344.713161 eV Total energy + Delta-G solvation = -4164.329277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.79473 -39.89510 -38.57958 -37.69295 -35.16786 -35.13154 -32.76851 -31.66428 -31.07008 -29.62178 -28.84961 -26.69639 -26.30404 -25.91997 -25.17894 -24.08429 -22.28311 -20.80848 -20.61876 -19.57895 -18.60682 -17.91471 -17.12854 -16.85975 -16.66802 -16.53952 -15.77238 -15.70602 -15.37626 -14.90756 -14.72984 -14.55288 -14.28708 -13.96980 -13.70277 -13.44687 -13.40508 -13.07873 -12.76567 -12.70421 -12.46523 -12.37099 -12.11474 -11.87709 -11.85150 -11.74749 -11.59442 -11.37949 -10.92393 -10.81478 -10.79667 -10.24587 -10.22646 -10.11270 -10.05937 -10.03428 -9.90354 -9.80242 -9.65403 -9.39103 -8.73220 -8.60235 -6.91722 -5.83948 -3.18840 2.26590 2.34455 2.51122 3.06206 3.35768 3.41060 3.41623 3.69772 4.23942 4.40526 4.42350 4.67411 4.72005 4.80546 4.84268 4.88992 4.91389 4.93128 4.95647 5.16161 5.25439 5.36243 5.39170 5.48166 5.52641 5.57212 5.60726 5.67577 5.88591 5.91279 5.98878 6.02701 6.06087 6.16951 6.19100 6.27367 6.43877 6.53856 6.59717 6.66723 6.72006 6.88723 7.18998 7.21663 7.47419 7.54743 7.66744 7.90756 8.03485 8.15378 9.05151 9.68718 10.46216 11.29739 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034278 B = 0.002131 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.645720 B =13136.360119 C =13399.379389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.045 3.955 4 C 0.517 3.483 5 O -0.519 6.519 6 N -0.711 5.711 7 C 0.132 3.868 8 H 0.114 0.886 9 C -0.166 4.166 10 C 0.527 3.473 11 O -0.547 6.547 12 N -0.605 5.605 13 C 0.102 3.898 14 C -0.110 4.110 15 H 0.086 0.914 16 C 0.131 3.869 17 N -0.592 5.592 18 C -0.227 4.227 19 H 0.076 0.924 20 C -0.004 4.004 21 N -0.914 5.914 22 Si 0.911 3.089 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.167 3.833 27 C -0.095 4.095 28 C -0.117 4.117 29 C 0.118 3.882 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.410 0.590 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.049 0.951 42 H 0.027 0.973 43 H 0.255 0.745 44 H 0.091 0.909 45 H 0.024 0.976 46 H 0.064 0.936 47 H 0.053 0.947 48 H 0.041 0.959 49 H 0.075 0.925 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.359 -7.489 -3.913 22.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.035 4.035 4 C 0.302 3.698 5 O -0.394 6.394 6 N -0.367 5.367 7 C 0.023 3.977 8 H 0.132 0.868 9 C -0.224 4.224 10 C 0.314 3.686 11 O -0.425 6.425 12 N -0.337 5.337 13 C -0.021 4.021 14 C -0.131 4.131 15 H 0.105 0.895 16 C 0.004 3.996 17 N -0.315 5.315 18 C -0.355 4.355 19 H 0.093 0.907 20 C -0.201 4.201 21 N -0.560 5.560 22 Si 0.741 3.259 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.041 3.959 27 C -0.098 4.098 28 C -0.174 4.174 29 C -0.005 4.005 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.247 0.753 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.068 0.932 42 H 0.045 0.955 43 H 0.065 0.935 44 H 0.110 0.890 45 H 0.042 0.958 46 H 0.083 0.917 47 H 0.072 0.928 48 H 0.060 0.940 49 H 0.094 0.906 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.114 -7.820 -3.660 22.811 hybrid contribution 0.501 0.788 0.263 0.970 sum -20.613 -7.032 -3.397 22.043 Atomic orbital electron populations 1.22851 0.80227 1.03397 1.00210 1.88015 1.19890 1.25098 1.95454 1.22198 0.91265 0.87097 1.02970 1.20228 0.88755 0.84329 0.76459 1.90745 1.74513 1.26366 1.47727 1.45616 1.05544 1.09709 1.75860 1.20678 0.80765 0.97449 0.98766 0.86799 1.22265 1.02829 1.03299 0.94035 1.20079 0.81144 0.88270 0.79075 1.90679 1.59542 1.41935 1.50349 1.48546 1.04253 1.20700 1.60171 1.22463 0.88694 0.91997 0.98985 1.23125 0.95023 0.97667 0.97319 0.89541 1.21854 0.90527 0.93504 0.93697 1.45033 1.03549 1.16947 1.65955 1.18923 0.82229 0.93384 1.40961 0.90652 1.24882 0.98149 0.95111 1.01982 1.69868 1.36782 0.96933 1.52450 0.86222 0.84099 0.76652 0.78901 1.21007 1.21577 1.21088 1.21775 0.84417 0.90953 0.98743 1.22560 0.95768 0.95924 0.95545 1.21547 1.01136 1.01152 0.93606 1.22269 0.91952 0.88095 0.98138 0.93747 0.89012 0.93705 0.89909 0.90002 0.75306 0.91725 0.90027 0.90780 0.90463 0.90790 0.93199 0.95506 0.93491 0.89033 0.95800 0.91731 0.92819 0.94032 0.90648 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.37 -3.76 10.24 -55.14 -0.56 -4.33 16 3 C 0.04 0.36 6.42 36.01 0.23 0.59 16 4 C 0.52 5.85 7.87 -10.99 -0.09 5.76 16 5 O -0.52 -7.99 16.16 -14.36 -0.23 -8.22 16 6 N -0.71 -7.35 4.95 -54.93 -0.27 -7.62 16 7 C 0.13 1.50 2.31 -69.08 -0.16 1.34 16 8 H 0.11 1.37 7.29 -51.93 -0.38 0.99 16 9 C -0.17 -1.62 9.26 37.16 0.34 -1.28 16 10 C 0.53 7.27 7.30 -10.99 -0.08 7.19 16 11 O -0.55 -8.89 16.07 5.56 0.09 -8.80 16 12 N -0.60 -8.45 3.31 -171.67 -0.57 -9.02 16 13 C 0.10 1.29 4.75 -3.27 -0.02 1.27 16 14 C -0.11 -1.72 3.74 -88.28 -0.33 -2.05 16 15 H 0.09 1.31 7.93 -51.93 -0.41 0.90 16 16 C 0.13 2.44 6.76 -2.27 -0.02 2.43 16 17 N -0.59 -14.01 3.37 -168.47 -0.57 -14.58 16 18 C -0.23 -5.99 10.37 -15.06 -0.16 -6.14 16 19 H 0.08 1.93 7.85 -52.48 -0.41 1.52 16 20 C 0.00 -0.11 5.40 -17.43 -0.09 -0.20 16 21 N -0.91 -25.74 10.89 55.49 0.60 -25.14 16 22 Si 0.91 21.29 29.56 -169.99 -5.03 16.26 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 C 0.17 3.68 5.11 -2.27 -0.01 3.67 16 27 C -0.10 -1.64 1.08 -152.18 -0.16 -1.80 16 28 C -0.12 -1.94 8.61 37.16 0.32 -1.62 16 29 C 0.12 1.86 6.22 -3.29 -0.02 1.84 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.41 3.69 7.79 -40.82 -0.32 3.38 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.75 5.16 -51.93 -0.27 0.48 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.94 6.50 -51.93 -0.34 0.60 16 40 H 0.07 0.78 6.90 -51.93 -0.36 0.42 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.03 0.49 7.16 -51.93 -0.37 0.12 16 43 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.09 2.30 6.24 -51.93 -0.32 1.98 16 45 H 0.02 0.56 7.17 -51.93 -0.37 0.19 16 46 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.08 1.22 7.63 -51.93 -0.40 0.82 16 50 H 0.07 1.21 7.10 -51.93 -0.37 0.84 16 LS Contribution 394.68 15.07 5.95 5.95 Total: -1.00 -33.27 394.68 -7.82 -41.09 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -8.10 Total: 2.14 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 0.87 Total: 12.27 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -0.80 Total: -56.36 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.71 Total: -21.35 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.27 -7.82 -41.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101247958.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.920 kcal (2) G-P(sol) polarization free energy of solvation -33.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds