Wall clock time and date at job start Tue Mar 31 2020 22:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00120 * 2 1 4 4 C 1.50700 * 109.47223 * 180.02562 * 3 2 1 5 5 O 1.21288 * 119.99590 * 359.97438 * 4 3 2 6 6 N 1.34770 * 120.00425 * 180.02562 * 4 3 2 7 7 C 1.46497 * 120.00596 * 179.97438 * 6 4 3 8 8 H 1.08998 * 109.46986 * 325.00358 * 7 6 4 9 9 C 1.53005 * 109.46825 * 85.00048 * 7 6 4 10 10 C 1.50700 * 109.47549 * 204.99998 * 7 6 4 11 11 O 1.21282 * 119.99597 * 0.02562 * 10 7 6 12 12 N 1.34766 * 120.00142 * 180.02562 * 10 7 6 13 13 C 1.47195 * 126.70270 * 0.02562 * 12 10 7 14 14 C 1.53747 * 106.43209 * 211.35030 * 13 12 10 15 15 H 1.09002 * 112.71903 * 104.04496 * 14 13 12 16 16 C 1.54452 * 109.01605 * 229.45720 * 14 13 12 17 17 N 1.48334 * 104.32223 * 137.35943 * 16 14 13 18 18 C 1.36933 * 128.19972 * 138.19570 * 17 16 14 19 19 H 1.08003 * 120.00085 * 344.10376 * 18 17 16 20 20 C 1.38811 * 120.00162 * 164.10185 * 18 17 16 21 21 N 1.31620 * 120.00070 * 350.53512 * 20 18 17 22 22 Si 1.86797 * 120.00012 * 170.53304 * 20 18 17 23 23 H 1.48501 * 109.47358 * 60.00382 * 22 20 18 24 24 H 1.48504 * 109.47141 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47328 * 299.99954 * 22 20 18 26 26 C 1.48334 * 103.60333 * 318.18929 * 17 16 14 27 27 C 1.54456 * 104.32465 * 41.81078 * 26 17 16 28 28 C 1.53006 * 112.29740 * 96.98233 * 27 26 17 29 29 C 1.47194 * 126.70591 * 180.02562 * 12 10 7 30 30 H 1.09003 * 109.47369 * 59.99816 * 1 2 3 31 31 H 1.08999 * 109.47451 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47016 * 300.00158 * 1 2 3 33 33 H 1.08998 * 109.46846 * 59.99899 * 3 2 1 34 34 H 1.09001 * 109.46987 * 300.00039 * 3 2 1 35 35 H 0.97006 * 119.99195 * 359.97438 * 6 4 3 36 36 H 1.08993 * 109.47164 * 59.99636 * 9 7 6 37 37 H 1.09003 * 109.46785 * 180.02562 * 9 7 6 38 38 H 1.09006 * 109.46659 * 300.00123 * 9 7 6 39 39 H 1.09003 * 110.06650 * 92.10760 * 13 12 10 40 40 H 1.08999 * 110.07038 * 330.59108 * 13 12 10 41 41 H 1.08997 * 110.46009 * 256.06893 * 16 14 13 42 42 H 1.08998 * 110.46335 * 18.52305 * 16 14 13 43 43 H 0.97006 * 119.99891 * 179.97438 * 21 20 18 44 44 H 1.09002 * 110.46376 * 160.51785 * 26 17 16 45 45 H 1.08998 * 110.46815 * 283.10005 * 26 17 16 46 46 H 1.09002 * 109.47320 * 302.35305 * 28 27 26 47 47 H 1.08995 * 109.46679 * 62.35420 * 28 27 26 48 48 H 1.09003 * 109.46344 * 182.35089 * 28 27 26 49 49 H 1.09000 * 110.06681 * 29.40646 * 29 12 10 50 50 H 1.08999 * 110.11308 * 267.91373 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1865 -0.0006 5 8 4.0341 0.0914 -0.0006 6 7 4.2765 2.2967 -0.0002 7 6 5.7369 2.1810 -0.0003 8 1 6.0327 1.3129 0.5888 9 6 6.2354 2.0160 -1.4374 10 6 6.3395 3.4248 0.6006 11 8 5.6197 4.3195 0.9910 12 7 7.6779 3.5428 0.7042 13 6 8.6836 2.5551 0.2804 14 6 9.8742 2.7068 1.2413 15 1 9.9207 1.9096 1.9832 16 6 11.1755 2.8168 0.4167 17 7 11.9436 3.8954 1.0854 18 6 13.2847 3.9353 1.3591 19 1 13.8711 3.0291 1.3197 20 6 13.8906 5.1403 1.6870 21 7 13.2258 6.2686 1.5552 22 14 15.6495 5.1607 2.3156 23 1 16.5488 4.5748 1.2894 24 1 16.0600 6.5608 2.5928 25 1 15.7380 4.3630 3.5650 26 6 10.9149 4.9206 1.3872 27 6 9.7006 4.1077 1.8876 28 6 9.6355 4.0418 3.4148 29 6 8.4198 4.6846 1.2633 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8593 3.1724 0.0001 36 1 5.9396 2.8840 -2.0265 37 1 7.3220 1.9295 -1.4374 38 1 5.7995 1.1163 -1.8720 39 1 9.0003 2.7591 -0.7425 40 1 8.2720 1.5483 0.3512 41 1 11.7284 1.8781 0.4505 42 1 10.9513 3.0891 -0.6146 43 1 13.6491 7.1107 1.7847 44 1 11.2678 5.5967 2.1660 45 1 10.6559 5.4773 0.4867 46 1 10.5576 3.6058 3.7993 47 1 9.5139 5.0475 3.8169 48 1 8.7887 3.4251 3.7160 49 1 7.8220 5.1808 2.0278 50 1 8.6745 5.3897 0.4721 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101247958.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:12 Heat of formation + Delta-G solvation = -98.197321 kcal Electronic energy + Delta-G solvation = -30510.048008 eV Core-core repulsion = 26344.713161 eV Total energy + Delta-G solvation = -4165.334846 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.91159 -40.91983 -39.75577 -38.39750 -36.64323 -36.10434 -34.37302 -33.10501 -32.11040 -31.16610 -29.46950 -28.08797 -27.54354 -26.83421 -26.60689 -25.20738 -23.64466 -22.18387 -21.66437 -20.67487 -19.95897 -18.98322 -18.54426 -17.93810 -17.60068 -17.27662 -16.90948 -16.61769 -16.59733 -16.32491 -15.83390 -15.76532 -15.38565 -15.31868 -14.97766 -14.90276 -14.35291 -14.07800 -13.98651 -13.78479 -13.59393 -13.28826 -13.27176 -13.13823 -13.09906 -12.92075 -12.75311 -12.67966 -12.41710 -12.38102 -12.33404 -11.91336 -11.71785 -11.51584 -11.47962 -11.27714 -11.03075 -10.92886 -10.75968 -10.69242 -10.30941 -9.78985 -8.83635 -7.86983 -5.22058 1.37875 1.41986 1.48515 1.50503 1.55403 1.56676 2.07701 2.51291 3.10007 3.19032 3.32674 3.50348 3.58340 3.70427 3.92172 3.96276 3.99120 4.06006 4.19085 4.20536 4.24857 4.27662 4.39061 4.52142 4.52739 4.59340 4.61371 4.65714 4.71618 4.76479 4.84785 4.89396 4.91792 4.94078 5.02091 5.15408 5.17577 5.22269 5.23608 5.28319 5.47005 5.49504 5.56593 5.75114 6.02177 6.23442 6.41003 6.44818 6.90407 7.05236 7.10846 7.73498 8.52885 9.25867 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034278 B = 0.002131 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.645720 B =13136.360119 C =13399.379389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.046 3.954 4 C 0.515 3.485 5 O -0.565 6.565 6 N -0.705 5.705 7 C 0.136 3.864 8 H 0.112 0.888 9 C -0.159 4.159 10 C 0.530 3.470 11 O -0.572 6.572 12 N -0.603 5.603 13 C 0.107 3.893 14 C -0.100 4.100 15 H 0.099 0.901 16 C 0.129 3.871 17 N -0.618 5.618 18 C -0.232 4.232 19 H 0.080 0.920 20 C -0.061 4.061 21 N -0.945 5.945 22 Si 0.972 3.028 23 H -0.276 1.276 24 H -0.297 1.297 25 H -0.279 1.279 26 C 0.175 3.825 27 C -0.087 4.087 28 C -0.111 4.111 29 C 0.126 3.874 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.418 0.582 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.058 0.942 42 H 0.034 0.966 43 H 0.248 0.752 44 H 0.053 0.947 45 H 0.003 0.997 46 H 0.046 0.954 47 H 0.050 0.950 48 H 0.063 0.937 49 H 0.072 0.928 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.076 -8.961 -4.404 25.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C -0.033 4.033 4 C 0.302 3.698 5 O -0.443 6.443 6 N -0.360 5.360 7 C 0.028 3.972 8 H 0.130 0.870 9 C -0.218 4.218 10 C 0.319 3.681 11 O -0.452 6.452 12 N -0.335 5.335 13 C -0.015 4.015 14 C -0.121 4.121 15 H 0.117 0.883 16 C 0.003 3.997 17 N -0.341 5.341 18 C -0.361 4.361 19 H 0.098 0.902 20 C -0.255 4.255 21 N -0.593 5.593 22 Si 0.801 3.199 23 H -0.202 1.202 24 H -0.224 1.224 25 H -0.205 1.205 26 C 0.049 3.951 27 C -0.090 4.090 28 C -0.168 4.168 29 C 0.003 3.997 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.256 0.744 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.124 0.876 41 H 0.077 0.923 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.021 0.979 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.082 0.918 49 H 0.090 0.910 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.861 -9.310 -4.169 25.034 hybrid contribution 0.989 1.243 0.391 1.635 sum -21.873 -8.068 -3.778 23.617 Atomic orbital electron populations 1.23040 0.78220 1.04206 1.01667 1.87956 1.22170 1.26519 1.95810 1.22333 0.88647 0.86900 1.05460 1.20872 0.90214 0.83565 0.75123 1.90720 1.75560 1.27994 1.50045 1.45607 1.05154 1.10047 1.75222 1.20640 0.81399 0.95656 0.99496 0.87022 1.22226 1.03322 1.03436 0.92766 1.20466 0.80644 0.88614 0.78384 1.90672 1.60035 1.43077 1.51381 1.48497 1.04605 1.20241 1.60116 1.22507 0.87264 0.93268 0.98500 1.23027 0.94742 0.96748 0.97549 0.88317 1.22051 0.91318 0.92260 0.94081 1.45312 1.03350 1.18511 1.66969 1.19285 0.83752 0.93439 1.39631 0.90211 1.25628 1.01744 0.94981 1.03126 1.70060 1.38059 0.97104 1.54125 0.85252 0.80115 0.76053 0.78504 1.20220 1.22376 1.20528 1.21548 0.85992 0.90841 0.96712 1.22356 0.94246 0.96290 0.96099 1.21473 1.01029 1.01335 0.92957 1.21994 0.91380 0.88596 0.97776 0.92091 0.88687 0.92372 0.87618 0.86992 0.74396 0.91275 0.89132 0.90856 0.89339 0.87631 0.92332 0.94785 0.94331 0.92828 0.97864 0.93528 0.93098 0.91834 0.90952 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 11.01 113.37 1.25 1.48 16 2 O -0.41 -7.65 10.24 -129.94 -1.33 -8.98 16 3 C 0.05 0.62 6.42 71.24 0.46 1.08 16 4 C 0.52 10.73 7.87 87.66 0.69 11.42 16 5 O -0.57 -16.83 16.16 15.98 0.26 -16.57 16 6 N -0.70 -13.04 4.95 -446.10 -2.21 -15.24 16 7 C 0.14 2.78 2.31 44.25 0.10 2.88 16 8 H 0.11 2.41 7.29 -2.39 -0.02 2.39 16 9 C -0.16 -2.69 9.26 71.98 0.67 -2.02 16 10 C 0.53 13.45 7.30 87.66 0.64 14.09 16 11 O -0.57 -17.59 16.07 -3.04 -0.05 -17.64 16 12 N -0.60 -15.52 3.31 -815.45 -2.70 -18.23 16 13 C 0.11 2.38 4.75 86.50 0.41 2.79 16 14 C -0.10 -2.91 3.74 -9.28 -0.03 -2.95 16 15 H 0.10 2.69 7.93 -2.39 -0.02 2.67 16 16 C 0.13 4.61 6.76 86.52 0.58 5.20 16 17 N -0.62 -29.50 3.37 -686.92 -2.32 -31.82 16 18 C -0.23 -12.36 10.37 84.03 0.87 -11.49 16 19 H 0.08 4.07 7.85 -2.91 -0.02 4.04 16 20 C -0.06 -3.35 5.40 84.86 0.46 -2.89 16 21 N -0.95 -55.17 10.89 21.65 0.24 -54.93 16 22 Si 0.97 44.46 29.56 68.60 2.03 46.49 16 23 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 24 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 25 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 26 C 0.18 7.94 5.11 86.52 0.44 8.38 16 27 C -0.09 -2.96 1.08 -50.67 -0.05 -3.02 16 28 C -0.11 -3.60 8.61 71.98 0.62 -2.99 16 29 C 0.13 3.87 6.22 86.49 0.54 4.40 16 30 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.42 6.55 7.79 -92.70 -0.72 5.83 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.09 1.35 5.16 -2.39 -0.01 1.34 16 38 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.09 1.85 6.50 -2.39 -0.02 1.83 16 40 H 0.11 1.78 6.90 -2.39 -0.02 1.77 16 41 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.03 1.19 7.16 -2.39 -0.02 1.17 16 43 H 0.25 14.18 8.31 -92.70 -0.77 13.40 16 44 H 0.05 2.83 6.24 -2.39 -0.01 2.81 16 45 H 0.00 0.17 7.17 -2.39 -0.02 0.15 16 46 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 49 H 0.07 2.28 7.63 -2.39 -0.02 2.27 16 50 H 0.06 2.12 7.10 -2.39 -0.02 2.10 16 Total: -1.00 -74.23 394.68 1.78 -72.44 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.23 Total: 18.10 kcal Atomic # 6 Polarization: 18.73 SS G_CDS: 7.64 Total: 26.37 kcal Atomic # 7 Polarization: -113.23 SS G_CDS: -6.99 Total: -120.22 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: -1.12 Total: -43.19 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -74.23 1.78 -72.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101247958.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.753 kcal (2) G-P(sol) polarization free energy of solvation -74.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds