Wall clock time and date at job start Tue Mar 31 2020 22:32:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 O 1.21279 * 120.00294 * 2 1
4 4 N 1.34778 * 120.00250 * 180.02562 * 2 1 3
5 5 C 1.46496 * 120.00151 * 179.97438 * 4 2 1
6 6 H 1.09001 * 109.47285 * 35.00013 * 5 4 2
7 7 C 1.53006 * 109.47266 * 274.99575 * 5 4 2
8 8 C 1.50703 * 109.47208 * 155.00208 * 5 4 2
9 9 O 1.21285 * 119.99833 * 16.89582 * 8 5 4
10 10 N 1.34776 * 120.00228 * 196.90230 * 8 5 4
11 11 C 1.46926 * 120.63145 * 184.47639 * 10 8 5
12 12 C 1.53186 * 108.77482 * 233.58402 * 11 10 8
13 13 C 1.53049 * 109.31666 * 305.36538 * 12 11 10
14 14 O 1.42899 * 109.46206 * 181.38432 * 13 12 11
15 15 C 1.42894 * 113.99906 * 149.99833 * 14 13 12
16 16 C 1.53488 * 114.20982 * 210.00027 * 15 14 13
17 17 N 1.47070 * 87.98769 * 220.15085 * 16 15 14
18 18 C 1.36931 * 136.05517 * 206.86245 * 17 16 15
19 19 H 1.08002 * 120.00475 * 356.58869 * 18 17 16
20 20 C 1.38811 * 120.00128 * 176.58996 * 18 17 16
21 21 N 1.31621 * 119.99694 * 6.97658 * 20 18 17
22 22 Si 1.86800 * 120.00422 * 186.97450 * 20 18 17
23 23 H 1.48502 * 109.47097 * 94.97631 * 22 20 18
24 24 H 1.48504 * 109.47170 * 214.97411 * 22 20 18
25 25 H 1.48499 * 109.46896 * 334.97563 * 22 20 18
26 26 C 1.47067 * 87.88162 * 27.11977 * 17 16 15
27 27 C 1.53043 * 109.53453 * 61.36384 * 13 12 11
28 28 C 1.46927 * 120.62923 * 4.45264 * 10 8 5
29 29 H 1.09000 * 109.46825 * 239.99623 * 1 2 3
30 30 H 1.08996 * 109.47036 * 359.97438 * 1 2 3
31 31 H 1.08993 * 109.47077 * 120.00291 * 1 2 3
32 32 H 0.97001 * 119.99707 * 359.97438 * 4 2 1
33 33 H 1.08997 * 109.47063 * 295.20805 * 7 5 4
34 34 H 1.08999 * 109.46751 * 55.20292 * 7 5 4
35 35 H 1.08997 * 109.47314 * 175.20152 * 7 5 4
36 36 H 1.09003 * 109.58335 * 113.80195 * 11 10 8
37 37 H 1.08991 * 109.70283 * 353.44663 * 11 10 8
38 38 H 1.09002 * 109.49792 * 185.41548 * 12 11 10
39 39 H 1.09002 * 109.49929 * 65.31655 * 12 11 10
40 40 H 1.08998 * 109.45495 * 301.36228 * 13 12 11
41 41 H 1.09006 * 113.28114 * 343.07333 * 15 14 13
42 42 H 1.09003 * 113.46734 * 105.36708 * 16 15 14
43 43 H 1.08997 * 113.52058 * 334.93913 * 16 15 14
44 44 H 0.97000 * 120.00381 * 180.02562 * 21 20 18
45 45 H 1.08996 * 113.46517 * 87.66485 * 26 17 16
46 46 H 1.08999 * 113.46194 * 218.09676 * 26 17 16
47 47 H 1.09002 * 109.49482 * 58.58791 * 27 13 12
48 48 H 1.08997 * 109.49617 * 178.68362 * 27 13 12
49 49 H 1.08994 * 109.58810 * 246.20456 * 28 10 8
50 50 H 1.09007 * 109.58566 * 6.48622 * 28 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1134 1.0503 0.0000
4 7 2.1809 -1.1672 -0.0005
5 6 3.6459 -1.1672 -0.0011
6 1 4.0095 -0.3255 0.5884
7 6 4.1554 -1.0412 -1.4383
8 6 4.1485 -2.4550 0.5989
9 8 3.4031 -3.4059 0.7054
10 7 5.4262 -2.5502 1.0171
11 6 5.9584 -3.8266 1.5133
12 6 6.5676 -3.6008 2.9006
13 6 7.6027 -2.4762 2.8220
14 8 8.1962 -2.2847 4.1077
15 6 9.5451 -1.8155 4.0611
16 6 10.4107 -2.2693 5.2446
17 7 11.0064 -0.9247 5.2576
18 6 12.2001 -0.3790 5.6477
19 1 12.9499 -0.9990 6.1166
20 6 12.4466 0.9713 5.4406
21 7 11.4867 1.7550 4.9970
22 14 14.1406 1.6761 5.7914
23 1 14.9358 1.7012 4.5374
24 1 14.0026 3.0579 6.3176
25 1 14.8301 0.8296 6.7980
26 6 9.7533 -0.4234 4.6734
27 6 6.9187 -1.1811 2.3782
28 6 6.3135 -1.3795 0.9849
29 1 -0.3633 -0.5139 0.8900
30 1 -0.3633 1.0276 0.0005
31 1 -0.3633 -0.5138 -0.8899
32 1 1.6959 -2.0072 -0.0005
33 1 3.8636 -1.9248 -2.0060
34 1 3.7234 -0.1536 -1.9004
35 1 5.2420 -0.9555 -1.4324
36 1 6.7268 -4.1917 0.8319
37 1 5.1536 -4.5583 1.5823
38 1 7.0510 -4.5172 3.2392
39 1 5.7812 -3.3229 3.6024
40 1 8.3755 -2.7439 2.1014
41 1 10.0146 -1.9498 3.0866
42 1 11.1200 -3.0559 4.9872
43 1 9.8355 -2.4979 6.1418
44 1 11.6590 2.6985 4.8518
45 1 9.0022 -0.1599 5.4180
46 1 9.9037 0.3597 3.9303
47 1 6.1290 -0.9261 3.0849
48 1 7.6520 -0.3753 2.3450
49 1 7.1108 -1.5451 0.2604
50 1 5.7417 -0.4952 0.7033
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001105685002.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:32:14
Heat of formation + Delta-G solvation = -55.505810 kcal
Electronic energy + Delta-G solvation = -30064.316190 eV
Core-core repulsion = 25900.832587 eV
Total energy + Delta-G solvation = -4163.483604 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-41.00052 -39.69293 -38.84012 -37.54810 -35.61235 -35.36652 -32.66992 -32.06406
-31.32046 -31.12093 -29.18741 -27.56444 -25.78421 -24.63524 -24.13436 -23.48802
-22.84778 -21.27137 -20.67585 -19.78662 -19.25196 -18.04422 -17.14925 -16.89957
-16.61711 -16.24370 -15.94300 -15.48878 -15.36964 -15.02073 -14.69507 -14.42684
-14.15744 -14.08794 -13.94270 -13.76323 -13.42838 -13.06102 -13.01324 -12.83752
-12.68423 -12.53458 -12.40795 -12.10000 -12.02846 -11.99725 -11.77638 -11.41978
-11.20968 -11.09534 -10.95539 -10.69209 -10.51911 -10.37506 -10.27259 -10.09892
-10.05877 -9.53803 -9.53513 -9.03665 -8.81064 -8.65724 -6.94460 -5.81926
-3.14068 2.12413 2.30017 2.41492 2.98033 3.36861 3.41400 3.44264
3.86521 3.97350 4.40816 4.45183 4.52982 4.65346 4.69675 4.74598
4.83269 4.89719 5.00178 5.01557 5.07379 5.16955 5.26249 5.28404
5.31225 5.33802 5.41195 5.45563 5.48360 5.53273 5.59157 5.68327
5.71470 5.72869 5.84293 5.96830 6.05955 6.15342 6.26512 6.42361
6.56229 6.62566 6.97703 7.06093 7.12941 7.18664 7.48673 7.70040
7.83227 7.85702 7.93711 8.99093 9.65369 10.58999 11.36004
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.016574 B = 0.002185 C = 0.002013
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1688.946597 B =12812.370020 C =13905.472064
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C 0.513 3.487
3 O -0.544 6.544
4 N -0.717 5.717
5 C 0.121 3.879
6 H 0.114 0.886
7 C -0.158 4.158
8 C 0.517 3.483
9 O -0.542 6.542
10 N -0.604 5.604
11 C 0.115 3.885
12 C -0.131 4.131
13 C 0.093 3.907
14 O -0.369 6.369
15 C 0.029 3.971
16 C 0.118 3.882
17 N -0.606 5.606
18 C -0.218 4.218
19 H 0.083 0.917
20 C -0.007 4.007
21 N -0.918 5.918
22 Si 0.915 3.085
23 H -0.287 1.287
24 H -0.290 1.290
25 H -0.280 1.280
26 C 0.143 3.857
27 C -0.159 4.159
28 C 0.103 3.897
29 H 0.089 0.911
30 H 0.094 0.906
31 H 0.089 0.911
32 H 0.411 0.589
33 H 0.064 0.936
34 H 0.075 0.925
35 H 0.075 0.925
36 H 0.072 0.928
37 H 0.097 0.903
38 H 0.084 0.916
39 H 0.074 0.926
40 H 0.060 0.940
41 H 0.086 0.914
42 H 0.042 0.958
43 H 0.040 0.960
44 H 0.254 0.746
45 H 0.031 0.969
46 H 0.070 0.930
47 H 0.076 0.924
48 H 0.089 0.911
49 H 0.077 0.923
50 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.497 -9.597 -14.296 26.012
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.232 4.232
2 C 0.300 3.700
3 O -0.421 6.421
4 N -0.372 5.372
5 C 0.013 3.987
6 H 0.132 0.868
7 C -0.216 4.216
8 C 0.304 3.696
9 O -0.420 6.420
10 N -0.337 5.337
11 C -0.007 4.007
12 C -0.170 4.170
13 C 0.035 3.965
14 O -0.286 6.286
15 C -0.029 4.029
16 C -0.009 4.009
17 N -0.334 5.334
18 C -0.345 4.345
19 H 0.101 0.899
20 C -0.204 4.204
21 N -0.564 5.564
22 Si 0.745 3.255
23 H -0.215 1.215
24 H -0.216 1.216
25 H -0.205 1.205
26 C 0.017 3.983
27 C -0.198 4.198
28 C -0.020 4.020
29 H 0.108 0.892
30 H 0.113 0.887
31 H 0.107 0.893
32 H 0.247 0.753
33 H 0.083 0.917
34 H 0.094 0.906
35 H 0.093 0.907
36 H 0.090 0.910
37 H 0.115 0.885
38 H 0.102 0.898
39 H 0.093 0.907
40 H 0.078 0.922
41 H 0.103 0.897
42 H 0.060 0.940
43 H 0.058 0.942
44 H 0.064 0.936
45 H 0.049 0.951
46 H 0.088 0.912
47 H 0.095 0.905
48 H 0.107 0.893
49 H 0.096 0.904
50 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -19.302 -9.117 -14.000 25.529
hybrid contribution 0.855 0.202 0.194 0.900
sum -18.447 -8.915 -13.806 24.706
Atomic orbital electron populations
1.21904 0.91125 1.05703 1.04490 1.20874 0.90800 0.83113 0.75196
1.90749 1.70772 1.31305 1.49268 1.45878 1.05679 1.09842 1.75782
1.20818 0.82232 0.96964 0.98720 0.86829 1.22111 1.02102 1.03447
0.93962 1.20528 0.81765 0.89607 0.77683 1.90672 1.55138 1.39648
1.56519 1.48111 1.10849 1.11865 1.62882 1.21646 0.99143 0.85389
0.94547 1.21999 0.98876 0.99355 0.96746 1.21992 0.94451 0.93540
0.86558 1.87932 1.27835 1.86232 1.26616 1.24760 0.80535 0.98819
0.98807 1.22591 0.93000 0.90136 0.95134 1.45302 1.11402 1.02968
1.73726 1.18918 0.89121 0.92547 1.33906 0.89902 1.24838 0.98081
0.95845 1.01657 1.69853 1.30781 1.04682 1.51129 0.86057 0.83268
0.78391 0.77796 1.21464 1.21646 1.20516 1.22537 0.87137 0.93167
0.95504 1.22495 1.01742 0.99729 0.95790 1.21960 0.93887 0.87775
0.98356 0.89190 0.88739 0.89253 0.75254 0.91715 0.90591 0.90660
0.90983 0.88471 0.89789 0.90683 0.92151 0.89660 0.93992 0.94197
0.93557 0.95088 0.91212 0.90549 0.89266 0.90427 0.89127
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -0.89 10.32 36.00 0.37 -0.52 16
2 C 0.51 4.75 7.90 -10.99 -0.09 4.66 16
3 O -0.54 -7.29 16.75 5.56 0.09 -7.20 16
4 N -0.72 -6.09 5.03 -54.93 -0.28 -6.36 16
5 C 0.12 1.10 2.13 -69.08 -0.15 0.95 16
6 H 0.11 1.13 5.96 -51.93 -0.31 0.82 16
7 C -0.16 -1.18 9.29 37.16 0.35 -0.84 16
8 C 0.52 5.37 6.96 -10.98 -0.08 5.30 16
9 O -0.54 -6.88 15.30 5.55 0.08 -6.80 16
10 N -0.60 -5.77 2.97 -172.77 -0.51 -6.28 16
11 C 0.11 1.06 6.43 -3.71 -0.02 1.04 16
12 C -0.13 -1.39 5.73 -26.61 -0.15 -1.54 16
13 C 0.09 1.16 2.56 -26.68 -0.07 1.09 16
14 O -0.37 -6.16 10.05 -35.23 -0.35 -6.51 16
15 C 0.03 0.56 4.61 -26.22 -0.12 0.44 16
16 C 0.12 2.50 8.52 -8.52 -0.07 2.43 16
17 N -0.61 -15.85 3.78 -184.82 -0.70 -16.55 16
18 C -0.22 -6.15 10.73 -15.06 -0.16 -6.32 16
19 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16
20 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16
21 N -0.92 -27.25 11.54 55.49 0.64 -26.61 16
22 Si 0.91 22.02 29.56 -169.99 -5.02 16.99 16
23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16
24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
26 C 0.14 3.40 7.26 -8.51 -0.06 3.34 16
27 C -0.16 -1.83 5.69 -26.61 -0.15 -1.98 16
28 C 0.10 0.90 5.55 -3.71 -0.02 0.88 16
29 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16
30 H 0.09 0.50 8.12 -51.93 -0.42 0.08 16
31 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16
32 H 0.41 3.03 7.72 -40.82 -0.32 2.71 16
33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16
34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16
35 H 0.07 0.48 7.11 -51.93 -0.37 0.11 16
36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
37 H 0.10 0.95 7.00 -51.93 -0.36 0.59 16
38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16
39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
40 H 0.06 0.70 7.44 -51.93 -0.39 0.32 16
41 H 0.09 1.52 7.47 -51.93 -0.39 1.13 16
42 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16
43 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16
44 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16
45 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16
46 H 0.07 1.80 7.14 -51.93 -0.37 1.43 16
47 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16
48 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16
49 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16
50 H 0.09 0.71 5.21 -51.93 -0.27 0.44 16
LS Contribution 400.67 15.07 6.04 6.04
Total: -1.00 -35.11 400.67 -8.77 -43.88
By element:
Atomic # 1 Polarization: 9.03 SS G_CDS: -8.24 Total: 0.79 kcal
Atomic # 6 Polarization: 9.13 SS G_CDS: -0.52 Total: 8.61 kcal
Atomic # 7 Polarization: -54.96 SS G_CDS: -0.85 Total: -55.80 kcal
Atomic # 8 Polarization: -20.33 SS G_CDS: -0.18 Total: -20.51 kcal
Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal
Total LS contribution 6.04 Total: 6.04 kcal
Total: -35.11 -8.77 -43.88 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001105685002.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.626 kcal
(2) G-P(sol) polarization free energy of solvation -35.109 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.735 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.880 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.506 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds