Wall clock time and date at job start Tue Mar 31 2020 23:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46508 * 109.47358 * 2 1 4 4 C 1.46766 * 124.34754 * 89.99637 * 3 2 1 5 5 C 1.54480 * 105.47102 * 163.00577 * 4 3 2 6 6 H 1.08996 * 110.96852 * 267.25897 * 5 4 3 7 7 C 1.50698 * 110.96885 * 143.53281 * 5 4 3 8 8 O 1.21284 * 119.99929 * 3.09381 * 7 5 4 9 9 N 1.34776 * 120.00478 * 183.08897 * 7 5 4 10 10 C 1.46491 * 120.00494 * 180.02562 * 9 7 5 11 11 C 1.53000 * 109.47429 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.51284 * 305.00596 * 11 10 9 13 13 C 1.53295 * 109.55823 * 184.87125 * 11 10 9 14 14 N 1.47152 * 108.38574 * 187.75089 * 13 11 10 15 15 C 1.36933 * 120.97918 * 230.55740 * 14 13 11 16 16 H 1.08001 * 119.99809 * 153.29973 * 15 14 13 17 17 C 1.38810 * 120.00379 * 333.30101 * 15 14 13 18 18 N 1.31621 * 119.99883 * 343.54753 * 17 15 14 19 19 Si 1.86806 * 120.00082 * 163.55768 * 17 15 14 20 20 H 1.48497 * 109.46983 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47079 * 119.99924 * 19 17 15 22 22 H 1.48502 * 109.46802 * 239.99729 * 19 17 15 23 23 C 1.47144 * 118.03616 * 50.53987 * 14 13 11 24 24 C 1.53301 * 108.38630 * 309.46293 * 23 14 13 25 25 O 1.42963 * 109.51040 * 65.10297 * 11 10 9 26 26 C 1.54636 * 101.79907 * 25.39915 * 5 4 3 27 27 C 1.34414 * 124.34733 * 270.02410 * 3 2 1 28 28 O 1.21279 * 124.94301 * 0.36518 * 27 3 2 29 29 H 1.09004 * 109.47418 * 300.00336 * 1 2 3 30 30 H 1.09004 * 109.47136 * 59.99711 * 1 2 3 31 31 H 1.09000 * 109.47164 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47500 * 239.99698 * 2 1 3 33 33 H 1.09008 * 109.46970 * 119.99798 * 2 1 3 34 34 H 1.08999 * 110.24626 * 44.00467 * 4 3 2 35 35 H 1.09001 * 110.31781 * 282.04579 * 4 3 2 36 36 H 0.97003 * 119.99438 * 0.02562 * 9 7 5 37 37 H 1.09002 * 109.47045 * 60.00165 * 10 9 7 38 38 H 1.08999 * 109.47097 * 300.00435 * 10 9 7 39 39 H 1.09005 * 109.47378 * 180.09918 * 12 11 10 40 40 H 1.08998 * 109.47492 * 60.09550 * 12 11 10 41 41 H 1.08997 * 109.47162 * 300.09272 * 12 11 10 42 42 H 1.08998 * 109.68316 * 307.48277 * 13 11 10 43 43 H 1.09003 * 109.67444 * 68.02636 * 13 11 10 44 44 H 0.96998 * 119.99906 * 179.97438 * 18 17 15 45 45 H 1.09000 * 109.68345 * 189.74393 * 23 14 13 46 46 H 1.09001 * 109.68676 * 69.18252 * 23 14 13 47 47 H 1.08999 * 109.50859 * 292.38375 * 24 23 14 48 48 H 1.08995 * 109.51262 * 172.22431 * 24 23 14 49 49 H 1.08996 * 110.48675 * 93.89683 * 26 5 4 50 50 H 1.08997 * 110.48487 * 216.54164 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2944 2.1620 1.2117 5 6 3.1741 3.3444 0.7487 6 1 4.2328 3.1041 0.8452 7 6 2.8368 4.5990 1.5124 8 8 2.0102 4.5653 2.3993 9 7 3.4537 5.7585 1.2100 10 6 3.1262 6.9779 1.9527 11 6 3.9613 8.1420 1.4157 12 6 5.4455 7.7746 1.4711 13 6 3.7106 9.3903 2.2695 14 7 4.3747 10.5344 1.6251 15 6 5.2068 11.3580 2.3354 16 1 5.9967 11.8936 1.8300 17 6 5.0351 11.5043 3.7051 18 7 3.9077 11.1285 4.2708 19 14 6.4040 12.2350 4.7452 20 1 7.5593 12.5736 3.8759 21 1 5.9125 13.4645 5.4174 22 1 6.8285 11.2469 5.7694 23 6 4.1186 10.7672 0.1950 24 6 4.3494 9.4519 -0.5579 25 8 3.5870 8.4141 0.0631 26 6 2.7697 3.4761 -0.7381 27 6 2.2708 2.0964 -1.1098 28 8 2.1214 1.6944 -2.2442 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.8326 1.5532 1.9382 35 1 1.3643 2.5305 1.6445 36 1 4.1146 5.7855 0.5004 37 1 3.3474 6.8299 3.0098 38 1 2.0669 7.2039 1.8314 39 1 6.0399 8.6050 1.0900 40 1 5.6238 6.8897 0.8601 41 1 5.7302 7.5673 2.5026 42 1 2.6393 9.5787 2.3385 43 1 4.1226 9.2410 3.2676 44 1 3.7878 11.2305 5.2280 45 1 4.8007 11.5298 -0.1808 46 1 3.0883 11.0943 0.0550 47 1 5.4082 9.1949 -0.5255 48 1 4.0330 9.5655 -1.5947 49 1 1.9748 4.2129 -0.8534 50 1 3.6332 3.7467 -1.3457 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107982968.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:05 Heat of formation + Delta-G solvation = -87.300330 kcal Electronic energy + Delta-G solvation = -30715.240585 eV Core-core repulsion = 26550.378267 eV Total energy + Delta-G solvation = -4164.862317 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.05744 -39.64404 -38.78237 -36.56337 -35.05620 -34.40285 -34.22981 -31.82507 -31.30223 -30.00998 -28.02499 -27.99872 -26.64120 -25.78801 -23.98602 -23.28822 -22.91743 -21.24162 -20.26650 -19.62843 -18.76939 -17.83801 -17.16207 -16.96508 -16.20619 -15.95855 -15.67822 -15.45566 -15.18816 -14.82042 -14.39013 -14.29963 -14.12529 -13.92784 -13.82307 -13.72497 -13.54421 -13.37837 -13.08591 -12.79933 -12.58837 -12.47637 -12.30062 -11.99174 -11.84243 -11.65346 -11.62269 -11.40032 -11.24541 -11.07321 -10.88289 -10.71105 -10.36859 -10.27790 -10.27228 -10.04056 -9.81852 -9.58755 -9.10437 -9.04624 -8.94813 -8.59213 -6.78631 -5.89511 -3.33400 2.30866 2.51868 2.62093 3.14829 3.29778 3.38142 3.39663 3.93828 4.05281 4.18500 4.39110 4.50336 4.55702 4.71211 4.84063 4.91979 5.03155 5.08336 5.16032 5.26619 5.29147 5.35409 5.40502 5.42600 5.46300 5.54093 5.59507 5.62259 5.84967 5.86615 5.88170 5.94277 6.01904 6.08083 6.22008 6.24295 6.37815 6.49092 6.60506 6.69566 6.77425 6.78567 7.01564 7.40665 7.50453 7.66753 7.82257 7.88005 8.17010 8.28290 9.06036 9.68865 10.26064 11.18501 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022749 B = 0.002382 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.520002 B =11752.603122 C =12410.414619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.123 3.877 3 N -0.620 5.620 4 C 0.117 3.883 5 C -0.124 4.124 6 H 0.118 0.882 7 C 0.521 3.479 8 O -0.538 6.538 9 N -0.712 5.712 10 C 0.139 3.861 11 C 0.078 3.922 12 C -0.162 4.162 13 C 0.160 3.840 14 N -0.591 5.591 15 C -0.254 4.254 16 H 0.068 0.932 17 C 0.004 3.996 18 N -0.901 5.901 19 Si 0.903 3.097 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.288 1.288 23 C 0.109 3.891 24 C 0.046 3.954 25 O -0.384 6.384 26 C -0.145 4.145 27 C 0.521 3.479 28 O -0.531 6.531 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.403 0.597 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.041 0.959 41 H 0.063 0.937 42 H 0.030 0.970 43 H 0.096 0.904 44 H 0.255 0.745 45 H 0.061 0.939 46 H 0.026 0.974 47 H 0.048 0.952 48 H 0.080 0.920 49 H 0.112 0.888 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.467 -18.678 -7.196 20.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.001 3.999 3 N -0.355 5.355 4 C -0.006 4.006 5 C -0.146 4.146 6 H 0.136 0.864 7 C 0.306 3.694 8 O -0.416 6.416 9 N -0.363 5.363 10 C 0.015 3.985 11 C 0.037 3.963 12 C -0.220 4.220 13 C 0.033 3.967 14 N -0.314 5.314 15 C -0.383 4.383 16 H 0.086 0.914 17 C -0.195 4.195 18 N -0.545 5.545 19 Si 0.732 3.268 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.215 1.215 23 C -0.018 4.018 24 C -0.032 4.032 25 O -0.304 6.304 26 C -0.185 4.185 27 C 0.308 3.692 28 O -0.408 6.408 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.239 0.761 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.060 0.940 41 H 0.082 0.918 42 H 0.048 0.952 43 H 0.114 0.886 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.044 0.956 47 H 0.066 0.934 48 H 0.099 0.901 49 H 0.130 0.870 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.346 -19.030 -7.058 20.342 hybrid contribution 1.164 0.713 0.505 1.456 sum -0.182 -18.317 -6.554 19.455 Atomic orbital electron populations 1.22173 0.95653 1.02386 1.02752 1.21355 0.94561 0.80831 1.03145 1.48379 1.65862 1.13947 1.07276 1.21986 1.00691 0.91083 0.86807 1.22241 1.02656 0.94387 0.95316 0.86430 1.19983 0.81373 0.84382 0.83700 1.90729 1.33390 1.85677 1.31774 1.46003 1.43216 1.08501 1.38579 1.21389 1.00085 0.81369 0.95651 1.22550 0.93241 0.96069 0.84483 1.22208 0.96850 1.00842 1.02058 1.21288 0.96449 0.82932 0.96031 1.43997 1.54155 1.28819 1.04447 1.19195 1.06808 1.22035 0.90270 0.91380 1.25056 0.96506 0.99864 0.98103 1.70018 1.22628 1.51293 1.10608 0.86223 0.81647 0.78510 0.80396 1.20246 1.21625 1.21463 1.21604 0.98720 0.94766 0.86688 1.23039 0.95253 0.89131 0.95739 1.87820 1.60763 1.55573 1.26205 1.22371 1.04513 0.96691 0.94968 1.20790 0.76738 0.87243 0.84392 1.90730 1.53851 1.75142 1.21075 0.92138 0.92202 0.91375 0.89984 0.90201 0.89697 0.88907 0.76135 0.89824 0.90666 0.90731 0.93982 0.91841 0.95233 0.88566 0.93459 0.92033 0.95635 0.93372 0.90142 0.87025 0.87035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 10.24 37.16 0.38 -0.87 16 2 C 0.12 0.92 6.65 -4.04 -0.03 0.89 16 3 N -0.62 -5.69 2.93 -172.38 -0.51 -6.20 16 4 C 0.12 0.98 6.69 -3.12 -0.02 0.96 16 5 C -0.12 -1.03 3.54 -90.14 -0.32 -1.35 16 6 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 7 C 0.52 6.22 7.06 -10.99 -0.08 6.14 16 8 O -0.54 -8.41 15.53 5.55 0.09 -8.32 16 9 N -0.71 -8.65 5.18 -60.30 -0.31 -8.97 16 10 C 0.14 2.15 4.85 -4.05 -0.02 2.13 16 11 C 0.08 1.34 0.78 -90.47 -0.07 1.27 16 12 C -0.16 -2.54 7.86 37.15 0.29 -2.25 16 13 C 0.16 3.56 4.11 -3.53 -0.01 3.54 16 14 N -0.59 -13.88 2.56 -171.83 -0.44 -14.32 16 15 C -0.25 -6.56 9.65 -15.06 -0.15 -6.71 16 16 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 17 C 0.00 0.10 4.95 -17.43 -0.09 0.01 16 18 N -0.90 -25.06 11.15 55.49 0.62 -24.45 16 19 Si 0.90 20.79 29.59 -169.99 -5.03 15.76 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.11 2.15 6.73 -3.53 -0.02 2.13 16 24 C 0.05 0.76 6.60 37.31 0.25 1.00 16 25 O -0.38 -6.62 10.17 -35.23 -0.36 -6.98 16 26 C -0.15 -1.28 6.41 -26.71 -0.17 -1.45 16 27 C 0.52 5.86 8.02 -10.83 -0.09 5.77 16 28 O -0.53 -7.93 17.59 5.56 0.10 -7.84 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.66 7.93 -51.93 -0.41 0.25 16 33 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.93 7.00 -51.93 -0.36 0.56 16 36 H 0.40 4.19 6.99 -40.82 -0.29 3.91 16 37 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.07 1.31 6.11 -51.93 -0.32 0.99 16 40 H 0.04 0.53 6.58 -51.93 -0.34 0.18 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.10 2.37 6.16 -51.93 -0.32 2.05 16 44 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 45 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 46 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.05 0.76 6.25 -51.93 -0.32 0.44 16 48 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.11 1.06 7.89 -51.93 -0.41 0.65 16 50 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 395.08 15.07 5.95 5.95 Total: -1.00 -32.34 395.08 -8.27 -40.61 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -8.23 Total: 3.53 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: -0.14 Total: 11.22 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -0.64 Total: -53.93 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.17 Total: -23.14 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.34 -8.27 -40.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107982968.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.691 kcal (2) G-P(sol) polarization free energy of solvation -32.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds