Wall clock time and date at job start Tue Mar 31 2020 23:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46508 * 109.47358 * 2 1 4 4 C 1.46766 * 124.34754 * 89.99637 * 3 2 1 5 5 C 1.54480 * 105.47102 * 163.00577 * 4 3 2 6 6 H 1.08996 * 110.96852 * 267.25897 * 5 4 3 7 7 C 1.50698 * 110.96885 * 143.53281 * 5 4 3 8 8 O 1.21284 * 119.99929 * 3.09381 * 7 5 4 9 9 N 1.34776 * 120.00478 * 183.08897 * 7 5 4 10 10 C 1.46491 * 120.00494 * 180.02562 * 9 7 5 11 11 C 1.53000 * 109.47429 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.51284 * 305.00596 * 11 10 9 13 13 C 1.53295 * 109.55823 * 184.87125 * 11 10 9 14 14 N 1.47152 * 108.38574 * 187.75089 * 13 11 10 15 15 C 1.36933 * 120.97918 * 230.55740 * 14 13 11 16 16 H 1.08001 * 119.99809 * 153.29973 * 15 14 13 17 17 C 1.38810 * 120.00379 * 333.30101 * 15 14 13 18 18 N 1.31621 * 119.99883 * 343.54753 * 17 15 14 19 19 Si 1.86806 * 120.00082 * 163.55768 * 17 15 14 20 20 H 1.48497 * 109.46983 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47079 * 119.99924 * 19 17 15 22 22 H 1.48502 * 109.46802 * 239.99729 * 19 17 15 23 23 C 1.47144 * 118.03616 * 50.53987 * 14 13 11 24 24 C 1.53301 * 108.38630 * 309.46293 * 23 14 13 25 25 O 1.42963 * 109.51040 * 65.10297 * 11 10 9 26 26 C 1.54636 * 101.79907 * 25.39915 * 5 4 3 27 27 C 1.34414 * 124.34733 * 270.02410 * 3 2 1 28 28 O 1.21279 * 124.94301 * 0.36518 * 27 3 2 29 29 H 1.09004 * 109.47418 * 300.00336 * 1 2 3 30 30 H 1.09004 * 109.47136 * 59.99711 * 1 2 3 31 31 H 1.09000 * 109.47164 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47500 * 239.99698 * 2 1 3 33 33 H 1.09008 * 109.46970 * 119.99798 * 2 1 3 34 34 H 1.08999 * 110.24626 * 44.00467 * 4 3 2 35 35 H 1.09001 * 110.31781 * 282.04579 * 4 3 2 36 36 H 0.97003 * 119.99438 * 0.02562 * 9 7 5 37 37 H 1.09002 * 109.47045 * 60.00165 * 10 9 7 38 38 H 1.08999 * 109.47097 * 300.00435 * 10 9 7 39 39 H 1.09005 * 109.47378 * 180.09918 * 12 11 10 40 40 H 1.08998 * 109.47492 * 60.09550 * 12 11 10 41 41 H 1.08997 * 109.47162 * 300.09272 * 12 11 10 42 42 H 1.08998 * 109.68316 * 307.48277 * 13 11 10 43 43 H 1.09003 * 109.67444 * 68.02636 * 13 11 10 44 44 H 0.96998 * 119.99906 * 179.97438 * 18 17 15 45 45 H 1.09000 * 109.68345 * 189.74393 * 23 14 13 46 46 H 1.09001 * 109.68676 * 69.18252 * 23 14 13 47 47 H 1.08999 * 109.50859 * 292.38375 * 24 23 14 48 48 H 1.08995 * 109.51262 * 172.22431 * 24 23 14 49 49 H 1.08996 * 110.48675 * 93.89683 * 26 5 4 50 50 H 1.08997 * 110.48487 * 216.54164 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2944 2.1620 1.2117 5 6 3.1741 3.3444 0.7487 6 1 4.2328 3.1041 0.8452 7 6 2.8368 4.5990 1.5124 8 8 2.0102 4.5653 2.3993 9 7 3.4537 5.7585 1.2100 10 6 3.1262 6.9779 1.9527 11 6 3.9613 8.1420 1.4157 12 6 5.4455 7.7746 1.4711 13 6 3.7106 9.3903 2.2695 14 7 4.3747 10.5344 1.6251 15 6 5.2068 11.3580 2.3354 16 1 5.9967 11.8936 1.8300 17 6 5.0351 11.5043 3.7051 18 7 3.9077 11.1285 4.2708 19 14 6.4040 12.2350 4.7452 20 1 7.5593 12.5736 3.8759 21 1 5.9125 13.4645 5.4174 22 1 6.8285 11.2469 5.7694 23 6 4.1186 10.7672 0.1950 24 6 4.3494 9.4519 -0.5579 25 8 3.5870 8.4141 0.0631 26 6 2.7697 3.4761 -0.7381 27 6 2.2708 2.0964 -1.1098 28 8 2.1214 1.6944 -2.2442 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.8326 1.5532 1.9382 35 1 1.3643 2.5305 1.6445 36 1 4.1146 5.7855 0.5004 37 1 3.3474 6.8299 3.0098 38 1 2.0669 7.2039 1.8314 39 1 6.0399 8.6050 1.0900 40 1 5.6238 6.8897 0.8601 41 1 5.7302 7.5673 2.5026 42 1 2.6393 9.5787 2.3385 43 1 4.1226 9.2410 3.2676 44 1 3.7878 11.2305 5.2280 45 1 4.8007 11.5298 -0.1808 46 1 3.0883 11.0943 0.0550 47 1 5.4082 9.1949 -0.5255 48 1 4.0330 9.5655 -1.5947 49 1 1.9748 4.2129 -0.8534 50 1 3.6332 3.7467 -1.3457 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107982968.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:04 Heat of formation + Delta-G solvation = -109.859757 kcal Electronic energy + Delta-G solvation = -30716.218835 eV Core-core repulsion = 26550.378267 eV Total energy + Delta-G solvation = -4165.840568 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.90414 -40.87570 -40.00752 -37.45721 -36.52039 -35.91640 -34.94052 -33.23226 -33.05691 -30.75691 -29.54310 -28.77601 -28.04769 -27.32608 -25.00926 -24.75413 -23.75324 -22.73655 -21.25167 -20.43068 -20.22057 -18.94914 -18.68940 -17.82210 -17.36190 -17.18648 -16.80192 -16.66752 -16.35377 -16.07986 -15.86004 -15.57492 -15.26389 -15.17853 -14.92485 -14.71672 -14.58887 -14.43623 -14.35205 -14.21089 -13.76302 -13.37185 -13.23434 -13.13474 -12.94160 -12.89606 -12.79847 -12.54547 -12.47441 -12.41295 -12.36621 -12.10006 -12.00599 -11.91507 -11.81983 -11.22811 -11.07535 -10.81307 -10.69581 -10.48161 -10.09979 -9.78051 -8.69495 -7.88561 -5.35652 1.45880 1.46750 1.48708 1.57403 1.58311 1.86366 2.20385 2.49133 2.82578 3.17882 3.26364 3.34399 3.52923 3.75619 3.87815 3.96857 4.06229 4.11188 4.14386 4.20228 4.25044 4.45327 4.46775 4.49115 4.55295 4.60855 4.62564 4.68299 4.75067 4.76779 4.80870 4.83644 4.92832 4.94571 5.00859 5.08267 5.15724 5.23958 5.24689 5.40127 5.40890 5.54512 5.56761 5.63591 6.03826 6.31345 6.40362 6.54395 7.06840 7.08855 7.21815 7.77831 8.31708 9.17035 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022749 B = 0.002382 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.520002 B =11752.603122 C =12410.414619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.116 3.884 3 N -0.615 5.615 4 C 0.117 3.883 5 C -0.108 4.108 6 H 0.155 0.845 7 C 0.524 3.476 8 O -0.577 6.577 9 N -0.701 5.701 10 C 0.149 3.851 11 C 0.093 3.907 12 C -0.154 4.154 13 C 0.166 3.834 14 N -0.607 5.607 15 C -0.257 4.257 16 H 0.073 0.927 17 C -0.050 4.050 18 N -0.936 5.936 19 Si 0.965 3.035 20 H -0.264 1.264 21 H -0.297 1.297 22 H -0.289 1.289 23 C 0.101 3.899 24 C 0.054 3.946 25 O -0.384 6.384 26 C -0.139 4.139 27 C 0.513 3.487 28 O -0.576 6.576 29 H 0.058 0.942 30 H 0.034 0.966 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.075 0.925 36 H 0.416 0.584 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.056 0.944 42 H -0.009 1.009 43 H 0.067 0.933 44 H 0.250 0.750 45 H 0.070 0.930 46 H 0.010 0.990 47 H 0.062 0.938 48 H 0.116 0.884 49 H 0.103 0.897 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.660 -20.374 -8.236 22.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.005 4.005 3 N -0.348 5.348 4 C -0.006 4.006 5 C -0.129 4.129 6 H 0.173 0.827 7 C 0.311 3.689 8 O -0.457 6.457 9 N -0.353 5.353 10 C 0.024 3.976 11 C 0.052 3.948 12 C -0.211 4.211 13 C 0.039 3.961 14 N -0.331 5.331 15 C -0.387 4.387 16 H 0.090 0.910 17 C -0.245 4.245 18 N -0.582 5.582 19 Si 0.794 3.206 20 H -0.188 1.188 21 H -0.224 1.224 22 H -0.216 1.216 23 C -0.025 4.025 24 C -0.024 4.024 25 O -0.304 6.304 26 C -0.179 4.179 27 C 0.301 3.699 28 O -0.456 6.456 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.093 0.907 36 H 0.254 0.746 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.101 0.899 41 H 0.075 0.925 42 H 0.009 0.991 43 H 0.085 0.915 44 H 0.059 0.941 45 H 0.089 0.911 46 H 0.028 0.972 47 H 0.080 0.920 48 H 0.134 0.866 49 H 0.122 0.878 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.803 -20.742 -8.125 22.291 hybrid contribution 0.407 1.280 0.805 1.566 sum 1.210 -19.462 -7.319 20.828 Atomic orbital electron populations 1.22139 0.95730 1.03294 1.01400 1.21558 0.94512 0.80186 1.04248 1.48518 1.64785 1.14466 1.07042 1.22048 1.00299 0.91467 0.86773 1.22211 1.04651 0.92037 0.94043 0.82745 1.20549 0.80224 0.85024 0.83149 1.90728 1.35003 1.86262 1.33687 1.45804 1.43588 1.07436 1.38516 1.21007 0.98563 0.82420 0.95563 1.22199 0.94964 0.94037 0.83622 1.22119 0.94593 1.01918 1.02482 1.21079 0.93719 0.85268 0.95998 1.44254 1.53901 1.29109 1.05851 1.19523 1.06885 1.21579 0.90669 0.90978 1.25785 0.98381 1.01033 0.99306 1.70184 1.24513 1.53184 1.10347 0.85239 0.79452 0.77200 0.78756 1.18815 1.22395 1.21589 1.21824 0.98038 0.97469 0.85128 1.23085 0.96176 0.86537 0.96568 1.87833 1.61314 1.55623 1.25616 1.22366 1.05099 0.95010 0.95455 1.21188 0.76398 0.88149 0.84123 1.90705 1.55974 1.76161 1.22781 0.92265 0.94642 0.89423 0.90661 0.87266 0.87024 0.90717 0.74601 0.90729 0.92666 0.92239 0.89925 0.92468 0.99107 0.91457 0.94078 0.91140 0.97167 0.91959 0.86648 0.87849 0.84745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.24 71.98 0.74 -1.55 16 2 C 0.12 1.52 6.65 86.38 0.57 2.10 16 3 N -0.62 -10.13 2.93 -817.88 -2.40 -12.53 16 4 C 0.12 1.65 6.69 86.83 0.58 2.24 16 5 C -0.11 -1.45 3.54 -10.48 -0.04 -1.48 16 6 H 0.15 1.05 8.14 -2.39 -0.02 1.03 16 7 C 0.52 11.45 7.06 87.66 0.62 12.07 16 8 O -0.58 -17.64 15.53 -3.04 -0.05 -17.68 16 9 N -0.70 -15.49 5.18 -463.08 -2.40 -17.89 16 10 C 0.15 4.60 4.85 86.38 0.42 5.02 16 11 C 0.09 3.14 0.78 -10.70 -0.01 3.13 16 12 C -0.15 -4.47 7.86 71.98 0.57 -3.91 16 13 C 0.17 7.66 4.11 86.35 0.35 8.01 16 14 N -0.61 -28.88 2.56 -697.55 -1.79 -30.66 16 15 C -0.26 -13.36 9.65 84.03 0.81 -12.55 16 16 H 0.07 3.63 7.88 -2.91 -0.02 3.61 16 17 C -0.05 -2.67 4.95 84.86 0.42 -2.25 16 18 N -0.94 -54.03 11.15 21.65 0.24 -53.78 16 19 Si 0.97 43.22 29.59 68.60 2.03 45.24 16 20 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 21 H -0.30 -13.53 7.11 99.48 0.71 -12.83 16 22 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 23 C 0.10 3.93 6.73 86.36 0.58 4.51 16 24 C 0.05 1.61 6.60 72.08 0.48 2.09 16 25 O -0.38 -12.51 10.17 -148.98 -1.52 -14.03 16 26 C -0.14 -2.09 6.41 30.61 0.20 -1.90 16 27 C 0.51 10.81 8.02 87.92 0.71 11.52 16 28 O -0.58 -16.98 17.59 -3.03 -0.05 -17.03 16 29 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 1.12 7.93 -2.39 -0.02 1.10 16 33 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 1.39 7.00 -2.39 -0.02 1.38 16 36 H 0.42 7.04 6.99 -92.71 -0.65 6.40 16 37 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.06 1.94 6.11 -2.38 -0.01 1.93 16 40 H 0.08 1.73 6.58 -2.39 -0.02 1.71 16 41 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 42 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 43 H 0.07 3.48 6.16 -2.39 -0.01 3.47 16 44 H 0.25 14.04 8.31 -92.71 -0.77 13.26 16 45 H 0.07 2.57 7.96 -2.39 -0.02 2.56 16 46 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 47 H 0.06 1.74 6.25 -2.39 -0.01 1.73 16 48 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 49 H 0.10 1.78 7.89 -2.39 -0.02 1.76 16 50 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -74.03 395.08 1.36 -72.67 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 0.29 Total: 18.65 kcal Atomic # 6 Polarization: 20.04 SS G_CDS: 6.99 Total: 27.04 kcal Atomic # 7 Polarization: -108.52 SS G_CDS: -6.34 Total: -114.86 kcal Atomic # 8 Polarization: -47.12 SS G_CDS: -1.62 Total: -48.74 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -74.03 1.36 -72.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107982968.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.189 kcal (2) G-P(sol) polarization free energy of solvation -74.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds