Wall clock time and date at job start Tue Mar 31 2020 23:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47057 * 2 1 4 4 C 1.46762 * 124.35097 * 90.00252 * 3 2 1 5 5 C 1.54487 * 105.47196 * 197.03844 * 4 3 2 6 6 H 1.08998 * 110.97118 * 92.73933 * 5 4 3 7 7 C 1.50700 * 110.96614 * 216.46556 * 5 4 3 8 8 O 1.21280 * 120.00160 * 359.97438 * 7 5 4 9 9 N 1.34774 * 119.99838 * 179.97438 * 7 5 4 10 10 C 1.46503 * 119.99788 * 179.97438 * 9 7 5 11 11 C 1.53000 * 109.46922 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.50874 * 60.10558 * 11 10 9 13 13 C 1.53710 * 109.44428 * 180.38816 * 11 10 9 14 14 N 1.47156 * 108.16526 * 172.37521 * 13 11 10 15 15 C 1.36930 * 120.98053 * 129.42946 * 14 13 11 16 16 H 1.08002 * 120.00538 * 333.78289 * 15 14 13 17 17 C 1.38813 * 119.99928 * 153.49806 * 15 14 13 18 18 N 1.31621 * 119.99762 * 343.09509 * 17 15 14 19 19 Si 1.86803 * 119.99907 * 163.08700 * 17 15 14 20 20 H 1.48495 * 109.47076 * 60.00647 * 19 17 15 21 21 H 1.48502 * 109.46761 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47475 * 300.00260 * 19 17 15 23 23 C 1.47149 * 118.03205 * 309.16521 * 14 13 11 24 24 C 1.53294 * 108.38906 * 50.78229 * 23 14 13 25 25 O 1.42959 * 109.22274 * 307.69673 * 24 23 14 26 26 C 1.54631 * 101.76415 * 334.58111 * 5 4 3 27 27 C 1.34421 * 124.34826 * 270.02424 * 3 2 1 28 28 O 1.21281 * 124.94267 * 359.53279 * 27 3 2 29 29 H 1.09000 * 109.47153 * 299.99948 * 1 2 3 30 30 H 1.08999 * 109.46859 * 60.00305 * 1 2 3 31 31 H 1.08998 * 109.47132 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47153 * 240.00052 * 2 1 3 33 33 H 1.08999 * 109.46859 * 119.99695 * 2 1 3 34 34 H 1.08995 * 110.24949 * 78.03709 * 4 3 2 35 35 H 1.08999 * 110.24129 * 316.03308 * 4 3 2 36 36 H 0.96999 * 120.00125 * 359.97438 * 9 7 5 37 37 H 1.09001 * 109.47183 * 60.00061 * 10 9 7 38 38 H 1.08993 * 109.47232 * 299.99975 * 10 9 7 39 39 H 1.08992 * 109.46958 * 299.89227 * 12 11 10 40 40 H 1.08993 * 109.47064 * 59.90081 * 12 11 10 41 41 H 1.09007 * 109.46980 * 179.89649 * 12 11 10 42 42 H 1.09004 * 109.84104 * 52.69759 * 13 11 10 43 43 H 1.09001 * 109.75027 * 292.00682 * 13 11 10 44 44 H 0.97008 * 119.99367 * 179.97438 * 18 17 15 45 45 H 1.09008 * 109.67799 * 170.50714 * 23 14 13 46 46 H 1.09001 * 109.68202 * 291.05212 * 23 14 13 47 47 H 1.09000 * 109.50840 * 67.62057 * 24 23 14 48 48 H 1.08996 * 109.51366 * 187.72240 * 24 23 14 49 49 H 1.08990 * 110.48407 * 143.47937 * 26 5 4 50 50 H 1.09000 * 110.48463 * 266.12492 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2944 2.1620 1.2117 5 6 2.3523 3.6347 0.7487 6 1 1.3776 4.1127 0.8456 7 6 3.4031 4.3990 1.5121 8 8 4.0640 3.8386 2.3606 9 7 3.6083 5.7054 1.2519 10 6 4.6294 6.4485 1.9945 11 6 4.6584 7.8991 1.5089 12 6 3.2908 8.5439 1.7432 13 6 5.7365 8.6759 2.2815 14 7 5.8684 10.0082 1.6708 15 6 5.8256 11.1422 2.4371 16 1 5.2954 11.1385 3.3780 17 6 6.4686 12.2950 2.0074 18 7 7.3805 12.2259 1.0607 19 14 6.0395 13.9442 2.7725 20 1 6.3175 13.9008 4.2305 21 1 6.8599 15.0102 2.1432 22 1 4.5997 14.2330 2.5514 23 6 6.0536 10.0855 0.2130 24 6 4.9653 9.2399 -0.4582 25 8 4.9679 7.9296 0.1135 26 6 2.7496 3.4824 -0.7379 27 6 2.2707 2.0964 -1.1098 28 8 2.1350 1.6896 -2.2442 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.2502 1.8642 1.6427 35 1 1.4934 2.0263 1.9384 36 1 3.0799 6.1535 0.5731 37 1 5.6045 5.9907 1.8287 38 1 4.3935 6.4258 3.0584 39 1 2.5299 7.9929 1.1905 40 1 3.0555 8.5204 2.8072 41 1 3.3127 9.5779 1.3987 42 1 6.6883 8.1481 2.2200 43 1 5.4399 8.7783 3.3254 44 1 7.8295 13.0315 0.7602 45 1 5.9668 11.1219 -0.1136 46 1 7.0367 9.6973 -0.0532 47 1 3.9926 9.7050 -0.2983 48 1 5.1649 9.1717 -1.5275 49 1 2.2480 4.2353 -1.3458 50 1 3.8310 3.5561 -0.8533 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107982971.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:14 Heat of formation + Delta-G solvation = -87.707852 kcal Electronic energy + Delta-G solvation = -30493.906551 eV Core-core repulsion = 26329.026562 eV Total energy + Delta-G solvation = -4164.879989 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.10844 -39.70400 -38.81981 -36.60132 -35.13815 -34.36818 -34.25087 -32.11879 -30.96390 -30.06022 -28.22724 -28.06029 -26.73054 -25.74812 -24.00980 -23.20712 -22.95916 -21.32351 -20.33521 -19.68208 -18.76128 -17.79313 -17.31046 -16.95132 -16.27530 -16.14800 -15.72452 -15.36392 -15.11273 -14.86449 -14.52858 -14.35589 -14.18351 -14.08195 -13.87594 -13.66807 -13.51981 -13.41198 -13.08006 -12.85680 -12.70204 -12.53328 -12.31508 -12.07979 -11.87640 -11.70244 -11.68306 -11.45873 -11.16859 -11.13675 -10.87483 -10.70638 -10.48350 -10.32474 -10.30045 -10.01954 -9.89858 -9.55733 -9.12792 -9.08311 -9.03634 -8.57070 -6.78946 -5.88596 -3.32172 2.27521 2.43535 2.58209 3.06361 3.31490 3.37987 3.38205 3.89327 4.01895 4.14899 4.38688 4.45404 4.51820 4.66727 4.78261 4.84991 4.97904 5.01255 5.11944 5.22741 5.25044 5.29697 5.32200 5.36877 5.37929 5.48964 5.50054 5.56275 5.75221 5.76537 5.88838 5.99651 6.01409 6.08838 6.18503 6.28242 6.34710 6.41451 6.45297 6.61906 6.70587 6.75648 7.06515 7.41100 7.47738 7.66251 7.81831 7.85366 8.07677 8.28671 9.06874 9.69624 10.26463 11.19191 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030522 B = 0.002139 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.160813 B =13088.085639 C =13458.800130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.620 5.620 4 C 0.117 3.883 5 C -0.124 4.124 6 H 0.117 0.883 7 C 0.523 3.477 8 O -0.540 6.540 9 N -0.710 5.710 10 C 0.137 3.863 11 C 0.088 3.912 12 C -0.166 4.166 13 C 0.128 3.872 14 N -0.589 5.589 15 C -0.255 4.255 16 H 0.068 0.932 17 C 0.003 3.997 18 N -0.902 5.902 19 Si 0.905 3.095 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.140 3.860 24 C 0.036 3.964 25 O -0.384 6.384 26 C -0.144 4.144 27 C 0.521 3.479 28 O -0.530 6.530 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.405 0.595 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.046 0.954 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.029 0.971 43 H 0.063 0.937 44 H 0.256 0.744 45 H 0.094 0.906 46 H 0.027 0.973 47 H 0.046 0.954 48 H 0.080 0.920 49 H 0.112 0.888 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.559 -18.542 -0.881 22.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.355 5.355 4 C -0.006 4.006 5 C -0.146 4.146 6 H 0.135 0.865 7 C 0.307 3.693 8 O -0.417 6.417 9 N -0.361 5.361 10 C 0.013 3.987 11 C 0.046 3.954 12 C -0.223 4.223 13 C 0.001 3.999 14 N -0.313 5.313 15 C -0.384 4.384 16 H 0.086 0.914 17 C -0.196 4.196 18 N -0.546 5.546 19 Si 0.735 3.265 20 H -0.208 1.208 21 H -0.216 1.216 22 H -0.210 1.210 23 C 0.014 3.986 24 C -0.041 4.041 25 O -0.303 6.303 26 C -0.185 4.185 27 C 0.308 3.692 28 O -0.407 6.407 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.241 0.759 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.047 0.953 43 H 0.082 0.918 44 H 0.066 0.934 45 H 0.112 0.888 46 H 0.045 0.955 47 H 0.064 0.936 48 H 0.098 0.902 49 H 0.130 0.870 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.009 -19.225 -1.025 23.235 hybrid contribution -0.406 1.511 0.241 1.583 sum -13.415 -17.714 -0.785 22.234 Atomic orbital electron populations 1.22164 0.95680 1.02434 1.02519 1.21354 0.94384 0.80951 1.03342 1.48371 1.65882 1.14001 1.07241 1.21986 1.03539 0.88140 0.86918 1.22229 1.00344 0.96596 0.95420 0.86503 1.19985 0.83857 0.82219 0.83209 1.90719 1.48734 1.68528 1.33761 1.45913 1.39433 1.09747 1.41043 1.21417 0.91799 0.89801 0.95657 1.22279 0.95932 0.93151 0.84012 1.22240 0.95626 1.02705 1.01735 1.21508 0.94803 0.87800 0.95829 1.44020 1.85078 0.99984 1.02201 1.19126 1.26955 0.88254 1.04077 0.91404 1.25051 0.96095 0.99143 0.99350 1.70026 1.24780 1.27767 1.32038 0.86333 0.77872 0.83527 0.78813 1.20824 1.21589 1.20998 1.21435 0.93882 0.99997 0.83277 1.23352 1.00204 0.83804 0.96784 1.87808 1.91514 1.29163 1.21838 1.22348 1.04757 0.96534 0.94847 1.20779 0.76383 0.87599 0.84410 1.90736 1.53406 1.75475 1.21064 0.92337 0.92199 0.91341 0.89917 0.90134 0.88803 0.89797 0.75927 0.90679 0.90083 0.93551 0.92091 0.90332 0.95341 0.91839 0.93432 0.88815 0.95478 0.93614 0.90167 0.86977 0.87004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.03 10.24 37.16 0.38 -0.65 16 2 C 0.12 0.86 6.65 -4.04 -0.03 0.83 16 3 N -0.62 -5.42 2.93 -172.41 -0.51 -5.92 16 4 C 0.12 0.90 6.71 -3.12 -0.02 0.88 16 5 C -0.12 -0.95 3.54 -90.13 -0.32 -1.27 16 6 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 7 C 0.52 5.67 7.06 -10.99 -0.08 5.60 16 8 O -0.54 -7.73 15.50 5.56 0.09 -7.64 16 9 N -0.71 -7.81 5.15 -60.29 -0.31 -8.12 16 10 C 0.14 1.85 4.82 -4.04 -0.02 1.83 16 11 C 0.09 1.38 0.76 -90.25 -0.07 1.31 16 12 C -0.17 -2.38 7.93 37.16 0.29 -2.09 16 13 C 0.13 2.51 5.44 -3.31 -0.02 2.49 16 14 N -0.59 -13.85 2.56 -171.57 -0.44 -14.29 16 15 C -0.25 -6.60 9.65 -15.06 -0.15 -6.75 16 16 H 0.07 1.72 7.88 -52.49 -0.41 1.30 16 17 C 0.00 0.07 4.95 -17.43 -0.09 -0.02 16 18 N -0.90 -25.24 11.14 55.49 0.62 -24.63 16 19 Si 0.90 20.86 29.59 -169.99 -5.03 15.83 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 C 0.14 3.16 5.44 -3.54 -0.02 3.15 16 24 C 0.04 0.65 6.60 37.31 0.25 0.89 16 25 O -0.38 -6.56 9.97 -35.23 -0.35 -6.91 16 26 C -0.14 -1.22 6.41 -26.74 -0.17 -1.39 16 27 C 0.52 5.69 8.02 -10.86 -0.09 5.61 16 28 O -0.53 -7.81 17.59 5.56 0.10 -7.71 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.66 7.92 -51.93 -0.41 0.25 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.86 6.96 -51.93 -0.36 0.50 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.41 3.90 7.20 -40.82 -0.29 3.60 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.05 0.55 6.87 -51.93 -0.36 0.19 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.08 1.34 6.12 -51.92 -0.32 1.03 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 44 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.09 2.35 6.14 -51.92 -0.32 2.03 16 46 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.05 0.79 6.25 -51.93 -0.32 0.47 16 48 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 49 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.11 1.02 7.89 -51.93 -0.41 0.61 16 LS Contribution 395.33 15.07 5.96 5.96 Total: -1.00 -32.36 395.33 -8.27 -40.62 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -8.25 Total: 2.39 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -0.14 Total: 10.42 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.64 Total: -52.96 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.17 Total: -22.26 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.36 -8.27 -40.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107982971.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.084 kcal (2) G-P(sol) polarization free energy of solvation -32.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds