Wall clock time and date at job start Tue Mar 31 2020 23:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47057 * 2 1 4 4 C 1.46762 * 124.35097 * 90.00252 * 3 2 1 5 5 C 1.54487 * 105.47196 * 197.03844 * 4 3 2 6 6 H 1.08998 * 110.97118 * 92.73933 * 5 4 3 7 7 C 1.50700 * 110.96614 * 216.46556 * 5 4 3 8 8 O 1.21280 * 120.00160 * 359.97438 * 7 5 4 9 9 N 1.34774 * 119.99838 * 179.97438 * 7 5 4 10 10 C 1.46503 * 119.99788 * 179.97438 * 9 7 5 11 11 C 1.53000 * 109.46922 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.50874 * 60.10558 * 11 10 9 13 13 C 1.53710 * 109.44428 * 180.38816 * 11 10 9 14 14 N 1.47156 * 108.16526 * 172.37521 * 13 11 10 15 15 C 1.36930 * 120.98053 * 129.42946 * 14 13 11 16 16 H 1.08002 * 120.00538 * 333.78289 * 15 14 13 17 17 C 1.38813 * 119.99928 * 153.49806 * 15 14 13 18 18 N 1.31621 * 119.99762 * 343.09509 * 17 15 14 19 19 Si 1.86803 * 119.99907 * 163.08700 * 17 15 14 20 20 H 1.48495 * 109.47076 * 60.00647 * 19 17 15 21 21 H 1.48502 * 109.46761 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47475 * 300.00260 * 19 17 15 23 23 C 1.47149 * 118.03205 * 309.16521 * 14 13 11 24 24 C 1.53294 * 108.38906 * 50.78229 * 23 14 13 25 25 O 1.42959 * 109.22274 * 307.69673 * 24 23 14 26 26 C 1.54631 * 101.76415 * 334.58111 * 5 4 3 27 27 C 1.34421 * 124.34826 * 270.02424 * 3 2 1 28 28 O 1.21281 * 124.94267 * 359.53279 * 27 3 2 29 29 H 1.09000 * 109.47153 * 299.99948 * 1 2 3 30 30 H 1.08999 * 109.46859 * 60.00305 * 1 2 3 31 31 H 1.08998 * 109.47132 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47153 * 240.00052 * 2 1 3 33 33 H 1.08999 * 109.46859 * 119.99695 * 2 1 3 34 34 H 1.08995 * 110.24949 * 78.03709 * 4 3 2 35 35 H 1.08999 * 110.24129 * 316.03308 * 4 3 2 36 36 H 0.96999 * 120.00125 * 359.97438 * 9 7 5 37 37 H 1.09001 * 109.47183 * 60.00061 * 10 9 7 38 38 H 1.08993 * 109.47232 * 299.99975 * 10 9 7 39 39 H 1.08992 * 109.46958 * 299.89227 * 12 11 10 40 40 H 1.08993 * 109.47064 * 59.90081 * 12 11 10 41 41 H 1.09007 * 109.46980 * 179.89649 * 12 11 10 42 42 H 1.09004 * 109.84104 * 52.69759 * 13 11 10 43 43 H 1.09001 * 109.75027 * 292.00682 * 13 11 10 44 44 H 0.97008 * 119.99367 * 179.97438 * 18 17 15 45 45 H 1.09008 * 109.67799 * 170.50714 * 23 14 13 46 46 H 1.09001 * 109.68202 * 291.05212 * 23 14 13 47 47 H 1.09000 * 109.50840 * 67.62057 * 24 23 14 48 48 H 1.08996 * 109.51366 * 187.72240 * 24 23 14 49 49 H 1.08990 * 110.48407 * 143.47937 * 26 5 4 50 50 H 1.09000 * 110.48463 * 266.12492 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2944 2.1620 1.2117 5 6 2.3523 3.6347 0.7487 6 1 1.3776 4.1127 0.8456 7 6 3.4031 4.3990 1.5121 8 8 4.0640 3.8386 2.3606 9 7 3.6083 5.7054 1.2519 10 6 4.6294 6.4485 1.9945 11 6 4.6584 7.8991 1.5089 12 6 3.2908 8.5439 1.7432 13 6 5.7365 8.6759 2.2815 14 7 5.8684 10.0082 1.6708 15 6 5.8256 11.1422 2.4371 16 1 5.2954 11.1385 3.3780 17 6 6.4686 12.2950 2.0074 18 7 7.3805 12.2259 1.0607 19 14 6.0395 13.9442 2.7725 20 1 6.3175 13.9008 4.2305 21 1 6.8599 15.0102 2.1432 22 1 4.5997 14.2330 2.5514 23 6 6.0536 10.0855 0.2130 24 6 4.9653 9.2399 -0.4582 25 8 4.9679 7.9296 0.1135 26 6 2.7496 3.4824 -0.7379 27 6 2.2707 2.0964 -1.1098 28 8 2.1350 1.6896 -2.2442 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.2502 1.8642 1.6427 35 1 1.4934 2.0263 1.9384 36 1 3.0799 6.1535 0.5731 37 1 5.6045 5.9907 1.8287 38 1 4.3935 6.4258 3.0584 39 1 2.5299 7.9929 1.1905 40 1 3.0555 8.5204 2.8072 41 1 3.3127 9.5779 1.3987 42 1 6.6883 8.1481 2.2200 43 1 5.4399 8.7783 3.3254 44 1 7.8295 13.0315 0.7602 45 1 5.9668 11.1219 -0.1136 46 1 7.0367 9.6973 -0.0532 47 1 3.9926 9.7050 -0.2983 48 1 5.1649 9.1717 -1.5275 49 1 2.2480 4.2353 -1.3458 50 1 3.8310 3.5561 -0.8533 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107982971.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:13 Heat of formation + Delta-G solvation = -110.100609 kcal Electronic energy + Delta-G solvation = -30494.877574 eV Core-core repulsion = 26329.026562 eV Total energy + Delta-G solvation = -4165.851012 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.89664 -40.86375 -39.99637 -37.46154 -36.57500 -35.80197 -34.91431 -33.54743 -32.65472 -30.75593 -29.75771 -28.77658 -28.00872 -27.23868 -24.93945 -24.69809 -23.76233 -22.80479 -21.22210 -20.42338 -20.19320 -18.91047 -18.53499 -18.02721 -17.45950 -17.03283 -16.90282 -16.66742 -16.20567 -16.16685 -15.82131 -15.58910 -15.22072 -15.12920 -15.00727 -14.68711 -14.61961 -14.51299 -14.31655 -14.06349 -13.75399 -13.40356 -13.30430 -13.06090 -12.87887 -12.84640 -12.72824 -12.57129 -12.48976 -12.38162 -12.36507 -12.12198 -12.00721 -11.99313 -11.83007 -11.23139 -11.06762 -10.75993 -10.73894 -10.46320 -10.06408 -9.76907 -8.70123 -7.88296 -5.34750 1.46487 1.48138 1.49641 1.56489 1.58558 1.87732 2.21139 2.50079 2.81583 3.19501 3.26494 3.35867 3.52416 3.76605 3.88734 3.93235 4.01189 4.09596 4.12144 4.20856 4.26018 4.48683 4.49251 4.54388 4.57349 4.61218 4.66451 4.72747 4.74663 4.77810 4.81891 4.84722 4.92219 4.95544 4.96209 5.04247 5.11161 5.26143 5.28394 5.41731 5.46437 5.55251 5.58598 5.64986 6.04310 6.30326 6.39272 6.55834 7.06978 7.09043 7.22424 7.77953 8.31584 9.17023 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030522 B = 0.002139 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.160813 B =13088.085639 C =13458.800130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.113 3.887 3 N -0.615 5.615 4 C 0.117 3.883 5 C -0.109 4.109 6 H 0.152 0.848 7 C 0.527 3.473 8 O -0.575 6.575 9 N -0.703 5.703 10 C 0.147 3.853 11 C 0.098 3.902 12 C -0.158 4.158 13 C 0.121 3.879 14 N -0.604 5.604 15 C -0.258 4.258 16 H 0.073 0.927 17 C -0.053 4.053 18 N -0.937 5.937 19 Si 0.969 3.031 20 H -0.277 1.277 21 H -0.298 1.298 22 H -0.275 1.275 23 C 0.144 3.856 24 C 0.052 3.948 25 O -0.383 6.383 26 C -0.139 4.139 27 C 0.512 3.488 28 O -0.578 6.578 29 H 0.069 0.931 30 H 0.039 0.961 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.416 0.584 37 H 0.058 0.942 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.011 0.989 43 H 0.070 0.930 44 H 0.250 0.750 45 H 0.065 0.935 46 H -0.007 1.007 47 H 0.058 0.942 48 H 0.103 0.897 49 H 0.131 0.869 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.345 -19.360 0.081 25.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.008 4.008 3 N -0.348 5.348 4 C -0.005 4.005 5 C -0.130 4.130 6 H 0.170 0.830 7 C 0.313 3.687 8 O -0.455 6.455 9 N -0.355 5.355 10 C 0.023 3.977 11 C 0.057 3.943 12 C -0.216 4.216 13 C -0.005 4.005 14 N -0.329 5.329 15 C -0.388 4.388 16 H 0.091 0.909 17 C -0.248 4.248 18 N -0.583 5.583 19 Si 0.797 3.203 20 H -0.203 1.203 21 H -0.224 1.224 22 H -0.201 1.201 23 C 0.018 3.982 24 C -0.026 4.026 25 O -0.302 6.302 26 C -0.179 4.179 27 C 0.300 3.700 28 O -0.458 6.458 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.121 0.879 34 H 0.097 0.903 35 H 0.128 0.872 36 H 0.253 0.747 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.029 0.971 43 H 0.088 0.912 44 H 0.059 0.941 45 H 0.084 0.916 46 H 0.012 0.988 47 H 0.076 0.924 48 H 0.121 0.879 49 H 0.149 0.851 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.833 -20.073 -0.032 25.566 hybrid contribution 0.525 1.665 0.014 1.746 sum -15.308 -18.408 -0.019 23.941 Atomic orbital electron populations 1.22100 0.94608 1.03347 1.01991 1.21542 0.95260 0.80252 1.03712 1.48517 1.64703 1.14522 1.07088 1.22061 1.03826 0.87926 0.86727 1.22206 1.00625 0.96282 0.93924 0.82999 1.20420 0.83749 0.81829 0.82666 1.90719 1.50109 1.69142 1.35494 1.45782 1.38803 1.09883 1.40997 1.21142 0.91978 0.88288 0.96337 1.22162 0.95362 0.94162 0.82651 1.22166 0.95195 1.01290 1.02900 1.21697 0.95583 0.86390 0.96871 1.44244 1.85089 1.00937 1.02580 1.19476 1.25934 0.89181 1.04197 0.90929 1.25807 0.96353 1.02329 1.00297 1.70193 1.26239 1.28030 1.33831 0.85322 0.77666 0.79364 0.77966 1.20278 1.22420 1.20055 1.21292 0.94132 0.99206 0.83578 1.23143 0.98674 0.83304 0.97453 1.87822 1.91520 1.28384 1.22488 1.22332 1.04360 0.95599 0.95650 1.21199 0.75974 0.88644 0.84148 1.90707 1.55626 1.76573 1.22887 0.91207 0.94208 0.89811 0.91441 0.87909 0.90272 0.87195 0.74707 0.92389 0.89185 0.90221 0.91086 0.92926 0.97119 0.91172 0.94108 0.91626 0.98844 0.92369 0.87866 0.85113 0.87830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 10.24 71.98 0.74 -0.92 16 2 C 0.11 1.43 6.65 86.38 0.57 2.00 16 3 N -0.62 -9.63 2.93 -817.98 -2.40 -12.03 16 4 C 0.12 1.47 6.71 86.84 0.58 2.05 16 5 C -0.11 -1.29 3.54 -10.48 -0.04 -1.32 16 6 H 0.15 0.84 8.14 -2.39 -0.02 0.82 16 7 C 0.53 9.94 7.06 87.66 0.62 10.56 16 8 O -0.57 -15.37 15.50 -3.03 -0.05 -15.42 16 9 N -0.70 -13.25 5.15 -463.06 -2.39 -15.63 16 10 C 0.15 3.68 4.82 86.38 0.42 4.09 16 11 C 0.10 2.90 0.76 -10.55 -0.01 2.89 16 12 C -0.16 -4.07 7.93 71.98 0.57 -3.50 16 13 C 0.12 4.73 5.44 86.49 0.47 5.20 16 14 N -0.60 -28.76 2.56 -696.72 -1.78 -30.54 16 15 C -0.26 -13.45 9.65 84.03 0.81 -12.64 16 16 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 17 C -0.05 -2.83 4.95 84.86 0.42 -2.41 16 18 N -0.94 -54.12 11.14 21.65 0.24 -53.88 16 19 Si 0.97 43.27 29.59 68.60 2.03 45.30 16 20 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.30 -13.56 7.11 99.48 0.71 -12.86 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 23 C 0.14 6.66 5.44 86.35 0.47 7.13 16 24 C 0.05 1.79 6.60 72.08 0.48 2.27 16 25 O -0.38 -12.39 9.97 -148.98 -1.49 -13.88 16 26 C -0.14 -2.03 6.41 30.59 0.20 -1.83 16 27 C 0.51 10.60 8.02 87.90 0.71 11.31 16 28 O -0.58 -17.05 17.59 -3.03 -0.05 -17.10 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 1.06 7.92 -2.39 -0.02 1.05 16 33 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 1.29 6.96 -2.39 -0.02 1.28 16 35 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.42 6.25 7.20 -92.71 -0.67 5.58 16 37 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.08 1.52 6.87 -2.39 -0.02 1.51 16 40 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.05 1.67 6.12 -2.38 -0.01 1.65 16 42 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.07 2.60 7.96 -2.39 -0.02 2.58 16 44 H 0.25 14.08 8.31 -92.70 -0.77 13.31 16 45 H 0.07 3.40 6.14 -2.38 -0.01 3.39 16 46 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 47 H 0.06 1.90 6.25 -2.39 -0.01 1.89 16 48 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 49 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.10 1.72 7.89 -2.39 -0.02 1.70 16 Total: -1.00 -73.20 395.33 1.39 -71.81 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.27 Total: 16.49 kcal Atomic # 6 Polarization: 17.88 SS G_CDS: 7.00 Total: 24.88 kcal Atomic # 7 Polarization: -105.76 SS G_CDS: -6.33 Total: -112.09 kcal Atomic # 8 Polarization: -44.81 SS G_CDS: -1.59 Total: -46.40 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -73.20 1.39 -71.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107982971.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.292 kcal (2) G-P(sol) polarization free energy of solvation -73.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds