Wall clock time and date at job start Tue Mar 31 2020 22:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42891 * 113.99960 * 2 1 4 4 H 1.08999 * 109.47711 * 330.00286 * 3 2 1 5 5 C 1.53008 * 109.46982 * 90.00011 * 3 2 1 6 6 C 1.50699 * 109.47379 * 209.99999 * 3 2 1 7 7 O 1.21281 * 119.99779 * 354.99819 * 6 3 2 8 8 N 1.34774 * 120.00504 * 175.00581 * 6 3 2 9 9 C 1.46498 * 120.00249 * 179.97438 * 8 6 3 10 10 C 1.56246 * 112.55402 * 298.43877 * 9 8 6 11 11 C 1.54846 * 104.36835 * 262.12554 * 10 9 8 12 12 C 1.54838 * 102.73714 * 321.37303 * 11 10 9 13 13 C 1.54163 * 104.32621 * 38.18266 * 12 11 10 14 14 H 1.08996 * 111.79701 * 99.63902 * 13 12 11 15 15 C 1.54319 * 108.86046 * 223.67738 * 13 12 11 16 16 N 1.48534 * 104.77296 * 138.34777 * 15 13 12 17 17 C 1.46898 * 111.00170 * 200.86267 * 16 15 13 18 18 C 1.50706 * 109.47046 * 176.48006 * 17 16 15 19 19 O 1.21288 * 120.00164 * 6.05124 * 18 17 16 20 20 N 1.34781 * 119.99813 * 186.05692 * 18 17 16 21 21 C 1.37095 * 119.99886 * 180.02562 * 20 18 17 22 22 H 1.08004 * 119.99849 * 359.97438 * 21 20 18 23 23 C 1.38943 * 119.99978 * 179.97438 * 21 20 18 24 24 N 1.31409 * 120.00085 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00056 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.46862 * 90.00073 * 25 23 21 27 27 H 1.48500 * 109.46728 * 209.99987 * 25 23 21 28 28 H 1.48503 * 109.46944 * 329.99719 * 25 23 21 29 29 C 1.48638 * 104.15770 * 320.51035 * 16 15 13 30 30 H 1.09004 * 109.47156 * 59.99810 * 1 2 3 31 31 H 1.09006 * 109.47172 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46985 * 299.99715 * 1 2 3 33 33 H 1.08996 * 109.46808 * 180.02562 * 5 3 2 34 34 H 1.09000 * 109.46825 * 299.99584 * 5 3 2 35 35 H 1.08997 * 109.47304 * 60.00038 * 5 3 2 36 36 H 0.97000 * 119.99812 * 359.97438 * 8 6 3 37 37 H 1.08995 * 110.82177 * 143.21503 * 10 9 8 38 38 H 1.08997 * 110.17002 * 20.71624 * 10 9 8 39 39 H 1.09005 * 110.76093 * 203.05446 * 11 10 9 40 40 H 1.09004 * 110.75871 * 79.68203 * 11 10 9 41 41 H 1.08996 * 110.46213 * 279.46856 * 12 11 10 42 42 H 1.09007 * 110.46475 * 156.89042 * 12 11 10 43 43 H 1.08996 * 110.39902 * 257.19825 * 15 13 12 44 44 H 1.08997 * 110.39984 * 19.49729 * 15 13 12 45 45 H 1.08999 * 109.47127 * 296.47659 * 17 16 15 46 46 H 1.08999 * 109.47260 * 56.48098 * 17 16 15 47 47 H 0.96999 * 119.99618 * 359.97438 * 20 18 17 48 48 H 0.97003 * 120.00254 * 179.97438 * 24 23 21 49 49 H 1.09000 * 110.29543 * 280.69523 * 29 16 15 50 50 H 1.09005 * 110.52872 * 158.39045 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7713 1.4426 6 6 3.3386 1.2639 -0.7104 7 8 3.7897 0.2045 -1.0913 8 7 4.0255 2.4039 -0.9223 9 6 5.3171 2.3635 -1.6124 10 6 6.3811 1.5161 -0.8435 11 6 7.2138 2.5620 -0.0622 12 6 7.3203 3.7342 -1.0682 13 6 5.9404 3.7744 -1.7545 14 1 5.2994 4.5467 -1.3295 15 6 6.1435 3.9684 -3.2720 16 7 5.1606 3.0527 -3.9057 17 6 5.5435 2.7460 -5.2904 18 6 4.5733 1.7496 -5.8709 19 8 3.5926 1.4188 -5.2386 20 7 4.7955 1.2260 -7.0928 21 6 3.9127 0.3199 -7.6212 22 1 3.0393 0.0254 -7.0581 23 6 4.1414 -0.2195 -8.8811 24 7 5.2037 0.1392 -9.5664 25 14 2.9388 -1.4546 -9.6007 26 1 1.8928 -0.7356 -10.3714 27 1 3.6651 -2.3856 -10.5012 28 1 2.3028 -2.2244 -8.5015 29 6 5.2001 1.8331 -3.0569 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.6606 2.7672 1.4426 34 1 1.2568 1.8014 1.9563 35 1 2.8829 1.0774 1.9564 36 1 3.6646 3.2513 -0.6178 37 1 7.0154 0.9668 -1.5392 38 1 5.8886 0.8296 -0.1549 39 1 8.2013 2.1682 0.1783 40 1 6.6910 2.8750 0.8417 41 1 8.1042 3.5384 -1.7998 42 1 7.5124 4.6703 -0.5438 43 1 5.9373 5.0009 -3.5539 44 1 7.1586 3.6927 -3.5578 45 1 5.5240 3.6602 -5.8837 46 1 6.5488 2.3250 -5.3046 47 1 5.5797 1.4908 -7.5986 48 1 5.3636 -0.2376 -10.4458 49 1 6.0683 1.2245 -3.3096 50 1 4.2839 1.2546 -3.1761 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111628942.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:07 Heat of formation + Delta-G solvation = -105.265185 kcal Electronic energy + Delta-G solvation = -31299.680817 eV Core-core repulsion = 27134.039485 eV Total energy + Delta-G solvation = -4165.641332 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.77902 -39.21403 -38.04533 -37.28206 -35.19758 -33.81486 -33.74032 -31.71700 -31.18679 -30.18024 -29.07843 -26.91302 -26.23762 -25.54344 -24.44072 -23.82724 -21.80526 -20.80036 -19.98230 -19.33442 -18.95358 -17.75947 -17.52345 -16.99760 -16.21096 -15.78232 -15.67704 -15.43891 -15.06695 -14.78588 -14.53248 -14.40859 -14.13084 -13.87413 -13.75221 -13.43784 -13.24926 -12.97672 -12.69391 -12.63431 -12.45125 -12.14696 -11.89829 -11.87860 -11.68270 -11.48134 -11.28064 -11.21282 -11.13914 -11.09393 -10.97115 -10.77327 -10.73172 -10.61408 -10.33979 -10.15706 -10.03190 -9.43098 -9.32606 -8.86052 -8.38699 -7.97266 -7.86468 -6.35881 -3.76114 2.77148 2.87744 3.22430 3.30485 3.37591 3.88679 3.97332 4.06864 4.18712 4.29775 4.50175 4.60432 4.70802 4.74668 4.89806 5.07254 5.12453 5.15339 5.17053 5.24303 5.28230 5.29261 5.30485 5.31853 5.45340 5.47893 5.54925 5.58710 5.71490 5.71958 5.78270 5.81192 5.82856 5.87329 5.91081 6.00511 6.13593 6.16198 6.20880 6.33410 6.56045 6.80295 6.93324 7.19580 7.29036 7.60750 7.61356 8.12634 8.39391 8.68413 9.24648 9.60660 10.13150 10.82087 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009793 B = 0.003594 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.602377 B = 7788.679706 C =10033.826935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.069 3.931 4 H 0.086 0.914 5 C -0.168 4.168 6 C 0.516 3.484 7 O -0.505 6.505 8 N -0.705 5.705 9 C 0.176 3.824 10 C -0.123 4.123 11 C -0.123 4.123 12 C -0.118 4.118 13 C -0.094 4.094 14 H 0.089 0.911 15 C 0.032 3.968 16 N -0.487 5.487 17 C 0.035 3.965 18 C 0.443 3.557 19 O -0.574 6.574 20 N -0.565 5.565 21 C -0.296 4.296 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.904 5.904 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 C 0.039 3.961 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.040 0.960 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.397 0.603 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.047 0.953 45 H 0.091 0.909 46 H 0.048 0.952 47 H 0.391 0.609 48 H 0.271 0.729 49 H 0.044 0.956 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.102 10.130 21.389 23.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.276 6.276 3 C 0.007 3.993 4 H 0.104 0.896 5 C -0.225 4.225 6 C 0.300 3.700 7 O -0.378 6.378 8 N -0.359 5.359 9 C 0.089 3.911 10 C -0.162 4.162 11 C -0.161 4.161 12 C -0.155 4.155 13 C -0.113 4.113 14 H 0.107 0.893 15 C -0.096 4.096 16 N -0.210 5.210 17 C -0.097 4.097 18 C 0.228 3.772 19 O -0.458 6.458 20 N -0.202 5.202 21 C -0.426 4.426 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.545 5.545 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.089 4.089 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.232 0.768 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.065 0.935 45 H 0.109 0.891 46 H 0.066 0.934 47 H 0.224 0.776 48 H 0.080 0.920 49 H 0.063 0.937 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.386 9.088 21.287 23.149 hybrid contribution 0.328 -0.085 -0.823 0.890 sum 0.713 9.003 20.464 22.368 Atomic orbital electron populations 1.22880 0.80695 1.03251 0.99948 1.88056 1.19607 1.25027 1.94871 1.21928 0.93924 0.87075 0.96355 0.89590 1.22215 1.03210 1.01792 0.95328 1.20249 0.85893 0.84295 0.79548 1.90756 1.68584 1.29720 1.48769 1.45663 1.21001 1.09076 1.60121 1.21786 0.82403 0.94773 0.92169 1.23057 0.96262 0.97388 0.99452 1.22516 0.99956 0.95733 0.97891 1.22490 0.95961 0.98730 0.98361 1.22685 0.96723 0.95985 0.95942 0.89279 1.23336 0.94825 0.98737 0.92698 1.65235 1.43836 1.11339 1.00637 1.22071 0.97059 0.99831 0.90759 1.19716 0.88461 0.85589 0.83438 1.90518 1.30774 1.63803 1.60667 1.41849 1.24500 1.38954 1.14909 1.19698 1.05103 1.17918 0.99835 0.87973 1.25237 0.97427 0.98861 0.96424 1.69613 1.26938 1.44573 1.13413 0.85874 0.79749 0.79940 0.78851 1.20446 1.20948 1.19389 1.23564 1.04009 0.92272 0.89101 0.93570 0.89186 0.94102 0.91086 0.91407 0.91172 0.76828 0.90605 0.90705 0.91425 0.91604 0.91034 0.91324 0.90138 0.93530 0.89133 0.93442 0.77561 0.91960 0.93736 0.86781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.82 101.05 1.09 1.39 16 2 O -0.36 -5.15 9.89 -55.09 -0.54 -5.69 16 3 C 0.07 0.82 3.13 -27.88 -0.09 0.73 16 4 H 0.09 0.88 7.79 -51.93 -0.40 0.47 16 5 C -0.17 -1.37 9.48 37.16 0.35 -1.02 16 6 C 0.52 7.84 6.29 -10.99 -0.07 7.77 16 7 O -0.51 -10.18 14.13 -14.30 -0.20 -10.38 16 8 N -0.71 -8.79 5.25 -44.45 -0.23 -9.03 16 9 C 0.18 2.37 0.93 -128.38 -0.12 2.25 16 10 C -0.12 -1.56 5.74 -24.02 -0.14 -1.69 16 11 C -0.12 -1.13 6.90 -24.79 -0.17 -1.30 16 12 C -0.12 -1.01 6.36 -25.15 -0.16 -1.17 16 13 C -0.09 -0.99 3.65 -88.32 -0.32 -1.31 16 14 H 0.09 0.80 7.72 -51.93 -0.40 0.40 16 15 C 0.03 0.40 6.02 -2.23 -0.01 0.39 16 16 N -0.49 -8.41 5.18 -231.44 -1.20 -9.61 16 17 C 0.03 0.65 5.39 -4.97 -0.03 0.62 16 18 C 0.44 10.96 7.43 -10.98 -0.08 10.88 16 19 O -0.57 -16.28 14.01 5.55 0.08 -16.20 16 20 N -0.57 -14.89 5.29 -10.96 -0.06 -14.95 16 21 C -0.30 -8.56 9.68 -14.94 -0.14 -8.70 16 22 H 0.10 3.12 7.16 -52.48 -0.38 2.74 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -25.24 13.05 55.50 0.72 -24.52 16 25 Si 0.93 21.80 29.55 -169.99 -5.02 16.77 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 29 C 0.04 0.71 4.47 -2.17 -0.01 0.70 16 30 H 0.05 0.46 8.09 -51.93 -0.42 0.04 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.04 0.31 7.87 -51.93 -0.41 -0.10 16 33 H 0.07 0.42 7.93 -51.93 -0.41 0.01 16 34 H 0.07 0.46 7.87 -51.93 -0.41 0.05 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.40 3.62 8.09 -40.82 -0.33 3.29 16 37 H 0.08 1.03 7.25 -51.93 -0.38 0.65 16 38 H 0.07 1.06 6.82 -51.93 -0.35 0.71 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.63 7.18 -51.93 -0.37 0.26 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.05 0.55 6.97 -51.93 -0.36 0.19 16 45 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 46 H 0.05 0.82 7.98 -51.93 -0.41 0.41 16 47 H 0.39 9.83 7.90 -40.82 -0.32 9.51 16 48 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 49 H 0.04 0.84 7.04 -51.93 -0.37 0.48 16 50 H 0.11 2.67 5.23 -51.93 -0.27 2.40 16 LS Contribution 393.64 15.07 5.93 5.93 Total: -1.00 -36.27 393.64 -8.61 -44.88 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -8.09 Total: 12.76 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 0.01 Total: 10.03 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.77 Total: -58.11 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -0.67 Total: -32.28 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.27 -8.61 -44.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111628942.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.381 kcal (2) G-P(sol) polarization free energy of solvation -36.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds