Wall clock time and date at job start Tue Mar 31 2020 22:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42891 * 113.99960 * 2 1 4 4 H 1.08999 * 109.47711 * 330.00286 * 3 2 1 5 5 C 1.53008 * 109.46982 * 90.00011 * 3 2 1 6 6 C 1.50699 * 109.47379 * 209.99999 * 3 2 1 7 7 O 1.21281 * 119.99779 * 354.99819 * 6 3 2 8 8 N 1.34774 * 120.00504 * 175.00581 * 6 3 2 9 9 C 1.46498 * 120.00249 * 179.97438 * 8 6 3 10 10 C 1.56246 * 112.55402 * 298.43877 * 9 8 6 11 11 C 1.54846 * 104.36835 * 262.12554 * 10 9 8 12 12 C 1.54838 * 102.73714 * 321.37303 * 11 10 9 13 13 C 1.54163 * 104.32621 * 38.18266 * 12 11 10 14 14 H 1.08996 * 111.79701 * 99.63902 * 13 12 11 15 15 C 1.54319 * 108.86046 * 223.67738 * 13 12 11 16 16 N 1.48534 * 104.77296 * 138.34777 * 15 13 12 17 17 C 1.46898 * 111.00170 * 200.86267 * 16 15 13 18 18 C 1.50706 * 109.47046 * 176.48006 * 17 16 15 19 19 O 1.21288 * 120.00164 * 6.05124 * 18 17 16 20 20 N 1.34781 * 119.99813 * 186.05692 * 18 17 16 21 21 C 1.37095 * 119.99886 * 180.02562 * 20 18 17 22 22 H 1.08004 * 119.99849 * 359.97438 * 21 20 18 23 23 C 1.38943 * 119.99978 * 179.97438 * 21 20 18 24 24 N 1.31409 * 120.00085 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00056 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.46862 * 90.00073 * 25 23 21 27 27 H 1.48500 * 109.46728 * 209.99987 * 25 23 21 28 28 H 1.48503 * 109.46944 * 329.99719 * 25 23 21 29 29 C 1.48638 * 104.15770 * 320.51035 * 16 15 13 30 30 H 1.09004 * 109.47156 * 59.99810 * 1 2 3 31 31 H 1.09006 * 109.47172 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46985 * 299.99715 * 1 2 3 33 33 H 1.08996 * 109.46808 * 180.02562 * 5 3 2 34 34 H 1.09000 * 109.46825 * 299.99584 * 5 3 2 35 35 H 1.08997 * 109.47304 * 60.00038 * 5 3 2 36 36 H 0.97000 * 119.99812 * 359.97438 * 8 6 3 37 37 H 1.08995 * 110.82177 * 143.21503 * 10 9 8 38 38 H 1.08997 * 110.17002 * 20.71624 * 10 9 8 39 39 H 1.09005 * 110.76093 * 203.05446 * 11 10 9 40 40 H 1.09004 * 110.75871 * 79.68203 * 11 10 9 41 41 H 1.08996 * 110.46213 * 279.46856 * 12 11 10 42 42 H 1.09007 * 110.46475 * 156.89042 * 12 11 10 43 43 H 1.08996 * 110.39902 * 257.19825 * 15 13 12 44 44 H 1.08997 * 110.39984 * 19.49729 * 15 13 12 45 45 H 1.08999 * 109.47127 * 296.47659 * 17 16 15 46 46 H 1.08999 * 109.47260 * 56.48098 * 17 16 15 47 47 H 0.96999 * 119.99618 * 359.97438 * 20 18 17 48 48 H 0.97003 * 120.00254 * 179.97438 * 24 23 21 49 49 H 1.09000 * 110.29543 * 280.69523 * 29 16 15 50 50 H 1.09005 * 110.52872 * 158.39045 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7713 1.4426 6 6 3.3386 1.2639 -0.7104 7 8 3.7897 0.2045 -1.0913 8 7 4.0255 2.4039 -0.9223 9 6 5.3171 2.3635 -1.6124 10 6 6.3811 1.5161 -0.8435 11 6 7.2138 2.5620 -0.0622 12 6 7.3203 3.7342 -1.0682 13 6 5.9404 3.7744 -1.7545 14 1 5.2994 4.5467 -1.3295 15 6 6.1435 3.9684 -3.2720 16 7 5.1606 3.0527 -3.9057 17 6 5.5435 2.7460 -5.2904 18 6 4.5733 1.7496 -5.8709 19 8 3.5926 1.4188 -5.2386 20 7 4.7955 1.2260 -7.0928 21 6 3.9127 0.3199 -7.6212 22 1 3.0393 0.0254 -7.0581 23 6 4.1414 -0.2195 -8.8811 24 7 5.2037 0.1392 -9.5664 25 14 2.9388 -1.4546 -9.6007 26 1 1.8928 -0.7356 -10.3714 27 1 3.6651 -2.3856 -10.5012 28 1 2.3028 -2.2244 -8.5015 29 6 5.2001 1.8331 -3.0569 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.6606 2.7672 1.4426 34 1 1.2568 1.8014 1.9563 35 1 2.8829 1.0774 1.9564 36 1 3.6646 3.2513 -0.6178 37 1 7.0154 0.9668 -1.5392 38 1 5.8886 0.8296 -0.1549 39 1 8.2013 2.1682 0.1783 40 1 6.6910 2.8750 0.8417 41 1 8.1042 3.5384 -1.7998 42 1 7.5124 4.6703 -0.5438 43 1 5.9373 5.0009 -3.5539 44 1 7.1586 3.6927 -3.5578 45 1 5.5240 3.6602 -5.8837 46 1 6.5488 2.3250 -5.3046 47 1 5.5797 1.4908 -7.5986 48 1 5.3636 -0.2376 -10.4458 49 1 6.0683 1.2245 -3.3096 50 1 4.2839 1.2546 -3.1761 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111628942.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:06 Heat of formation + Delta-G solvation = -134.949027 kcal Electronic energy + Delta-G solvation = -31300.968005 eV Core-core repulsion = 27134.039485 eV Total energy + Delta-G solvation = -4166.928520 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.90657 -40.48142 -39.76471 -38.38982 -36.56665 -35.79909 -34.89886 -33.33198 -32.56611 -31.28833 -30.30392 -27.82692 -27.71599 -26.59881 -26.05702 -24.97551 -22.89734 -21.94178 -21.09657 -20.71131 -20.43426 -19.85182 -18.60545 -18.01934 -17.63102 -17.13868 -16.81205 -16.60132 -16.56114 -16.19567 -15.93793 -15.69917 -15.48757 -15.38848 -15.00605 -14.84494 -14.35258 -14.07387 -13.96791 -13.65023 -13.56556 -13.37614 -13.30761 -13.10569 -12.98713 -12.78615 -12.72168 -12.47464 -12.45756 -12.23388 -12.17623 -12.12749 -11.98289 -11.78233 -11.59078 -11.49698 -11.48846 -11.01832 -10.45845 -10.31825 -10.06425 -9.99923 -9.39004 -8.50660 -5.99389 1.33553 1.36587 1.50046 1.61694 1.89051 2.01043 2.25404 2.80741 2.99544 3.14284 3.18434 3.42700 3.50330 3.67775 3.82213 3.90403 4.06504 4.14248 4.21591 4.26286 4.33928 4.36585 4.41061 4.43340 4.49168 4.50149 4.50991 4.62204 4.68938 4.75427 4.80139 4.80926 4.81701 4.94341 4.96909 5.10445 5.15207 5.18694 5.23111 5.26902 5.36225 5.47043 5.62062 5.78413 5.89429 6.05022 6.08188 6.56630 6.61360 7.09170 7.31378 7.51428 8.08848 8.66994 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009793 B = 0.003594 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.602377 B = 7788.679706 C =10033.826935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.400 6.400 3 C 0.067 3.933 4 H 0.104 0.896 5 C -0.157 4.157 6 C 0.505 3.495 7 O -0.569 6.569 8 N -0.690 5.690 9 C 0.174 3.826 10 C -0.124 4.124 11 C -0.112 4.112 12 C -0.109 4.109 13 C -0.083 4.083 14 H 0.118 0.882 15 C 0.031 3.969 16 N -0.502 5.502 17 C 0.046 3.954 18 C 0.436 3.564 19 O -0.616 6.616 20 N -0.573 5.573 21 C -0.334 4.334 22 H 0.073 0.927 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.992 3.008 26 H -0.267 1.267 27 H -0.267 1.267 28 H -0.278 1.278 29 C 0.043 3.957 30 H 0.042 0.958 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.417 0.583 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.057 0.943 45 H 0.118 0.882 46 H 0.064 0.936 47 H 0.396 0.604 48 H 0.279 0.721 49 H 0.022 0.978 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.791 13.210 22.855 26.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.319 6.319 3 C 0.006 3.994 4 H 0.121 0.879 5 C -0.214 4.214 6 C 0.291 3.709 7 O -0.447 6.447 8 N -0.343 5.343 9 C 0.087 3.913 10 C -0.163 4.163 11 C -0.150 4.150 12 C -0.146 4.146 13 C -0.102 4.102 14 H 0.136 0.864 15 C -0.097 4.097 16 N -0.226 5.226 17 C -0.085 4.085 18 C 0.223 3.777 19 O -0.502 6.502 20 N -0.211 5.211 21 C -0.464 4.464 22 H 0.091 0.909 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.815 3.185 26 H -0.192 1.192 27 H -0.191 1.191 28 H -0.203 1.203 29 C -0.086 4.086 30 H 0.061 0.939 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.255 0.745 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.075 0.925 45 H 0.136 0.864 46 H 0.082 0.918 47 H 0.230 0.770 48 H 0.088 0.912 49 H 0.040 0.960 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.095 12.246 22.761 25.869 hybrid contribution 0.092 -1.072 -1.307 1.692 sum 1.186 11.174 21.454 24.219 Atomic orbital electron populations 1.23060 0.78855 1.04020 1.01285 1.88001 1.21813 1.26874 1.95213 1.22137 0.92013 0.86671 0.98587 0.87876 1.22185 1.04353 1.02628 0.92252 1.21076 0.87023 0.83957 0.78809 1.90722 1.70348 1.32115 1.51469 1.45549 1.20552 1.09355 1.58876 1.21799 0.83204 0.97010 0.89310 1.23007 0.96279 0.98039 0.98941 1.22488 0.99839 0.94549 0.98078 1.22487 0.94297 0.99776 0.98066 1.22758 0.98306 0.94110 0.95021 0.86394 1.23545 0.94106 0.98499 0.93510 1.65189 1.46326 1.11310 0.99781 1.21967 0.95576 0.98968 0.92012 1.20849 0.88763 0.85571 0.82488 1.90500 1.32990 1.65234 1.61491 1.41907 1.24414 1.39105 1.15685 1.19603 1.05589 1.20294 1.00909 0.90934 1.26012 0.99045 1.00002 0.96005 1.69664 1.27634 1.44926 1.13775 0.84959 0.77900 0.77746 0.77904 1.19176 1.19128 1.20345 1.23317 0.99935 0.92373 0.92963 0.93916 0.88905 0.90925 0.88261 0.89266 0.92565 0.74508 0.92653 0.93059 0.90305 0.89950 0.91067 0.87984 0.87693 0.92460 0.86382 0.91839 0.77006 0.91191 0.95967 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 10.82 113.37 1.23 1.71 16 2 O -0.40 -12.00 9.89 -129.99 -1.28 -13.28 16 3 C 0.07 1.60 3.13 29.85 0.09 1.69 16 4 H 0.10 2.03 7.79 -2.39 -0.02 2.01 16 5 C -0.16 -2.26 9.48 71.98 0.68 -1.58 16 6 C 0.50 16.12 6.29 87.66 0.55 16.67 16 7 O -0.57 -25.14 14.13 15.96 0.23 -24.92 16 8 N -0.69 -16.99 5.25 -412.94 -2.17 -19.16 16 9 C 0.17 4.68 0.93 5.83 0.01 4.69 16 10 C -0.12 -3.19 5.74 32.35 0.19 -3.01 16 11 C -0.11 -1.74 6.90 31.85 0.22 -1.52 16 12 C -0.11 -1.40 6.36 31.62 0.20 -1.20 16 13 C -0.08 -1.47 3.65 -9.30 -0.03 -1.50 16 14 H 0.12 1.48 7.72 -2.39 -0.02 1.46 16 15 C 0.03 0.67 6.02 86.43 0.52 1.19 16 16 N -0.50 -17.23 5.18 -886.14 -4.59 -21.82 16 17 C 0.05 1.74 5.39 85.56 0.46 2.20 16 18 C 0.44 22.62 7.43 87.66 0.65 23.27 16 19 O -0.62 -37.35 14.01 -3.05 -0.04 -37.39 16 20 N -0.57 -31.53 5.29 -306.98 -1.62 -33.15 16 21 C -0.33 -20.25 9.68 84.04 0.81 -19.44 16 22 H 0.07 4.74 7.16 -2.91 -0.02 4.72 16 23 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 24 N -0.92 -51.51 13.05 21.66 0.28 -51.22 16 25 Si 0.99 45.29 29.55 68.60 2.03 47.31 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 28 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 29 C 0.04 1.67 4.47 86.42 0.39 2.06 16 30 H 0.04 0.87 8.09 -2.38 -0.02 0.85 16 31 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.07 0.98 7.87 -2.39 -0.02 0.96 16 33 H 0.10 0.84 7.93 -2.39 -0.02 0.82 16 34 H 0.09 0.93 7.87 -2.39 -0.02 0.91 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.42 6.64 8.09 -92.71 -0.75 5.89 16 37 H 0.05 1.61 7.25 -2.39 -0.02 1.59 16 38 H 0.05 1.55 6.82 -2.39 -0.02 1.54 16 39 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.07 0.97 7.18 -2.39 -0.02 0.95 16 42 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 43 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.06 1.17 6.97 -2.39 -0.02 1.15 16 45 H 0.12 3.79 8.14 -2.39 -0.02 3.77 16 46 H 0.06 2.18 7.98 -2.39 -0.02 2.16 16 47 H 0.40 20.51 7.90 -92.71 -0.73 19.78 16 48 H 0.28 14.53 8.31 -92.71 -0.77 13.76 16 49 H 0.02 0.92 7.04 -2.39 -0.02 0.90 16 50 H 0.05 2.79 5.23 -2.38 -0.01 2.78 16 Total: -1.00 -87.84 393.64 -1.26 -89.10 By element: Atomic # 1 Polarization: 39.96 SS G_CDS: -0.52 Total: 39.44 kcal Atomic # 6 Polarization: 18.66 SS G_CDS: 6.43 Total: 25.09 kcal Atomic # 7 Polarization: -117.25 SS G_CDS: -8.10 Total: -125.36 kcal Atomic # 8 Polarization: -74.49 SS G_CDS: -1.10 Total: -75.59 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -87.84 -1.26 -89.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111628942.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.846 kcal (2) G-P(sol) polarization free energy of solvation -87.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds