Wall clock time and date at job start Tue Mar 31 2020 22:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99958 * 2 1 4 4 H 1.08996 * 109.47156 * 29.99950 * 3 2 1 5 5 C 1.53001 * 109.47027 * 269.99974 * 3 2 1 6 6 C 1.50700 * 109.47101 * 149.99835 * 3 2 1 7 7 O 1.21289 * 119.99801 * 5.00157 * 6 3 2 8 8 N 1.34773 * 120.00427 * 184.99737 * 6 3 2 9 9 C 1.46495 * 120.00236 * 179.97438 * 8 6 3 10 10 C 1.54156 * 112.51499 * 298.12618 * 9 8 6 11 11 C 1.54837 * 104.32694 * 260.86127 * 10 9 8 12 12 C 1.54846 * 102.73699 * 321.81576 * 11 10 9 13 13 C 1.54167 * 104.32083 * 38.18162 * 12 11 10 14 14 H 1.08995 * 112.50841 * 99.14876 * 13 12 11 15 15 C 1.54317 * 108.86229 * 223.67827 * 13 12 11 16 16 N 1.48814 * 104.70556 * 137.49732 * 15 13 12 17 17 C 1.46907 * 111.12967 * 200.84748 * 16 15 13 18 18 C 1.50698 * 109.47194 * 285.30997 * 17 16 15 19 19 O 1.21298 * 119.99937 * 359.97438 * 18 17 16 20 20 N 1.34776 * 119.99987 * 180.02562 * 18 17 16 21 21 C 1.37101 * 120.00018 * 180.02562 * 20 18 17 22 22 H 1.07995 * 119.99958 * 359.97438 * 21 20 18 23 23 C 1.38943 * 119.99807 * 180.02562 * 21 20 18 24 24 N 1.31411 * 119.99823 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00337 * 359.97438 * 23 21 20 26 26 H 1.48495 * 109.47301 * 90.00236 * 25 23 21 27 27 H 1.48509 * 109.47133 * 210.00405 * 25 23 21 28 28 H 1.48498 * 109.47142 * 330.00189 * 25 23 21 29 29 C 1.48533 * 104.06982 * 320.37959 * 16 15 13 30 30 H 1.09006 * 109.47248 * 59.99567 * 1 2 3 31 31 H 1.09002 * 109.46923 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47062 * 300.00164 * 1 2 3 33 33 H 1.08996 * 109.47133 * 299.99990 * 5 3 2 34 34 H 1.08994 * 109.47019 * 60.00222 * 5 3 2 35 35 H 1.08997 * 109.46779 * 180.02562 * 5 3 2 36 36 H 0.97007 * 119.99649 * 0.02562 * 8 6 3 37 37 H 1.09007 * 110.46374 * 19.57561 * 10 9 8 38 38 H 1.09007 * 110.46184 * 142.14786 * 10 9 8 39 39 H 1.09000 * 110.76063 * 203.50504 * 11 10 9 40 40 H 1.08999 * 110.75961 * 80.13142 * 11 10 9 41 41 H 1.09005 * 110.45795 * 279.47409 * 12 11 10 42 42 H 1.08998 * 110.46579 * 156.89401 * 12 11 10 43 43 H 1.09003 * 110.39559 * 256.28935 * 15 13 12 44 44 H 1.09001 * 110.39923 * 18.57880 * 15 13 12 45 45 H 1.09000 * 109.46928 * 45.31100 * 17 16 15 46 46 H 1.08996 * 109.46919 * 165.30670 * 17 16 15 47 47 H 0.96996 * 119.99742 * 359.97438 * 20 18 17 48 48 H 0.97001 * 120.00260 * 179.97438 * 24 23 21 49 49 H 1.09002 * 110.39914 * 280.77448 * 29 16 15 50 50 H 1.09004 * 110.39775 * 158.48650 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3386 1.2639 0.7104 7 8 3.7897 0.2045 1.0914 8 7 4.0255 2.4040 0.9224 9 6 5.3165 2.3636 1.6135 10 6 5.1983 1.8286 3.0544 11 6 5.1825 3.1016 3.9357 12 6 6.2009 4.0238 3.2215 13 6 5.9585 3.7693 1.7205 14 1 5.3349 4.5369 1.2624 15 6 7.3222 3.6387 1.0100 16 7 7.1528 2.4936 0.0748 17 6 8.4525 1.9263 -0.3086 18 6 9.1325 2.8462 -1.2895 19 8 8.5878 3.8733 -1.6356 20 7 10.3455 2.5273 -1.7831 21 6 10.9644 3.3646 -2.6751 22 1 10.4798 4.2794 -2.9825 23 6 12.2145 3.0355 -3.1842 24 7 12.8075 3.8377 -4.0396 25 14 13.0524 1.4528 -2.6529 26 1 12.6637 0.3539 -3.5729 27 1 14.5258 1.6348 -2.6939 28 1 12.6341 1.1115 -1.2696 29 6 6.3506 1.5114 0.8481 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 2.8829 1.0775 -1.9563 34 1 1.2569 1.8015 -1.9563 35 1 2.6614 2.7669 -1.4425 36 1 3.6646 3.2514 0.6180 37 1 4.2715 1.2681 3.1780 38 1 6.0576 1.2049 3.3011 39 1 5.5123 2.8738 4.9494 40 1 4.1909 3.5539 3.9435 41 1 7.2199 3.7499 3.4948 42 1 6.0070 5.0680 3.4671 43 1 7.5512 4.5497 0.4571 44 1 8.1090 3.4266 1.7340 45 1 9.0764 1.8155 0.5782 46 1 8.3010 0.9506 -0.7704 47 1 10.7808 1.7058 -1.5066 48 1 13.6805 3.6082 -4.3948 49 1 6.9864 0.9675 1.5467 50 1 5.8472 0.8177 0.1745 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111628943.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:11 Heat of formation + Delta-G solvation = -99.459249 kcal Electronic energy + Delta-G solvation = -30887.199920 eV Core-core repulsion = 26721.810353 eV Total energy + Delta-G solvation = -4165.389568 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.02024 -39.40307 -38.25765 -37.49787 -35.35483 -33.99848 -33.83264 -31.83644 -31.64175 -30.31672 -29.31596 -27.12071 -26.40535 -25.65592 -24.48131 -23.81396 -21.95511 -20.82619 -20.05264 -19.54649 -19.22861 -18.20601 -17.67923 -17.18380 -16.37088 -16.05582 -15.65535 -15.55228 -15.16040 -15.00548 -14.75087 -14.64252 -14.20969 -14.15429 -13.67822 -13.53144 -13.17578 -13.06137 -12.80760 -12.70311 -12.62640 -12.31123 -12.27647 -12.05206 -11.93506 -11.71484 -11.49931 -11.37258 -11.33095 -11.21788 -11.05532 -10.92274 -10.74505 -10.63500 -10.56600 -10.25505 -9.95117 -9.57487 -9.52262 -9.12313 -8.58599 -8.14860 -8.04044 -6.28313 -3.79379 2.47934 2.66557 3.05117 3.09783 3.17347 3.68584 3.78246 3.96521 4.11917 4.13154 4.38993 4.44019 4.57555 4.61226 4.70464 4.88272 4.95332 5.01693 5.05022 5.10533 5.14786 5.23452 5.27499 5.29122 5.33739 5.35697 5.40819 5.47232 5.50475 5.64767 5.71857 5.74038 5.80840 5.83150 5.85705 5.88104 5.97892 5.99645 6.06509 6.14870 6.31504 6.49951 6.71466 7.03808 7.12440 7.38692 7.61827 8.11652 8.17470 8.63950 8.98549 9.46040 9.87841 10.84941 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013697 B = 0.002770 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.717414 B =10105.091958 C =11159.665092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.070 3.930 4 H 0.083 0.917 5 C -0.171 4.171 6 C 0.516 3.484 7 O -0.516 6.516 8 N -0.704 5.704 9 C 0.178 3.822 10 C -0.122 4.122 11 C -0.124 4.124 12 C -0.119 4.119 13 C -0.093 4.093 14 H 0.092 0.908 15 C 0.041 3.959 16 N -0.483 5.483 17 C 0.031 3.969 18 C 0.457 3.543 19 O -0.559 6.559 20 N -0.594 5.594 21 C -0.302 4.302 22 H 0.119 0.881 23 C 0.041 3.959 24 N -0.883 5.883 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.030 3.970 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.401 0.599 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.098 0.902 44 H 0.044 0.956 45 H 0.052 0.948 46 H 0.089 0.911 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.050 0.950 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.065 -3.939 15.147 27.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.009 3.991 4 H 0.101 0.899 5 C -0.229 4.229 6 C 0.301 3.699 7 O -0.390 6.390 8 N -0.357 5.357 9 C 0.091 3.909 10 C -0.161 4.161 11 C -0.161 4.161 12 C -0.157 4.157 13 C -0.113 4.113 14 H 0.111 0.889 15 C -0.087 4.087 16 N -0.206 5.206 17 C -0.101 4.101 18 C 0.242 3.758 19 O -0.440 6.440 20 N -0.234 5.234 21 C -0.431 4.431 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.523 5.523 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 C -0.099 4.099 30 H 0.062 0.938 31 H 0.108 0.892 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.236 0.764 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.116 0.884 44 H 0.062 0.938 45 H 0.070 0.930 46 H 0.107 0.893 47 H 0.202 0.798 48 H 0.083 0.917 49 H 0.068 0.932 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -22.057 -3.997 14.518 26.707 hybrid contribution 0.948 -0.923 0.727 1.510 sum -21.109 -4.920 15.246 26.499 Atomic orbital electron populations 1.22873 0.80741 1.03211 0.99948 1.88063 1.19521 1.25200 1.94938 1.21947 0.93479 0.86729 0.96979 0.89876 1.22232 1.03377 1.02533 0.94754 1.20311 0.86076 0.84196 0.79331 1.90719 1.69096 1.29612 1.49584 1.45790 1.20811 1.09336 1.59783 1.21412 0.82443 0.95603 0.91464 1.22705 1.03217 0.97411 0.92734 1.22534 0.99268 0.95631 0.98680 1.22502 0.99803 0.99994 0.93388 1.22740 0.97125 0.95335 0.96072 0.88931 1.23382 0.94361 0.97116 0.93821 1.65231 1.14189 1.05595 1.35589 1.22091 0.90680 0.98717 0.98620 1.19596 0.82458 0.88277 0.85468 1.90539 1.64730 1.26751 1.61968 1.42217 1.17140 1.22143 1.41876 1.19410 1.00612 1.04662 1.18417 0.86316 1.25025 0.96549 0.97918 0.96718 1.69620 1.16082 1.36660 1.29984 0.86681 0.80109 0.83721 0.78935 1.19614 1.20229 1.19550 1.23564 0.94762 0.94913 0.96639 0.93807 0.89186 0.93961 0.90768 0.91339 0.90598 0.76401 0.90702 0.90567 0.91372 0.91569 0.90945 0.91095 0.88400 0.93788 0.93035 0.89250 0.79767 0.91675 0.93166 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.82 101.05 1.09 1.29 16 2 O -0.36 -4.05 9.89 -55.09 -0.54 -4.59 16 3 C 0.07 0.65 3.13 -27.88 -0.09 0.57 16 4 H 0.08 0.53 7.79 -51.93 -0.40 0.13 16 5 C -0.17 -1.43 9.48 37.16 0.35 -1.08 16 6 C 0.52 6.18 6.24 -10.99 -0.07 6.11 16 7 O -0.52 -8.19 14.03 -14.31 -0.20 -8.39 16 8 N -0.70 -7.22 5.23 -45.49 -0.24 -7.45 16 9 C 0.18 2.03 0.92 -129.52 -0.12 1.91 16 10 C -0.12 -1.28 5.66 -25.16 -0.14 -1.42 16 11 C -0.12 -1.03 6.90 -24.79 -0.17 -1.20 16 12 C -0.12 -1.06 6.36 -25.15 -0.16 -1.22 16 13 C -0.09 -1.02 3.70 -88.32 -0.33 -1.35 16 14 H 0.09 0.93 7.72 -51.93 -0.40 0.53 16 15 C 0.04 0.60 5.47 -2.07 -0.01 0.59 16 16 N -0.48 -7.93 4.98 -231.28 -1.15 -9.08 16 17 C 0.03 0.54 5.32 -4.97 -0.03 0.52 16 18 C 0.46 10.54 7.63 -10.99 -0.08 10.46 16 19 O -0.56 -14.95 14.82 5.54 0.08 -14.87 16 20 N -0.59 -14.41 5.09 -10.97 -0.06 -14.46 16 21 C -0.30 -8.63 10.16 -14.93 -0.15 -8.78 16 22 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -26.02 13.96 55.50 0.77 -25.24 16 25 Si 0.88 19.70 27.74 -169.99 -4.71 14.99 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 28 H -0.27 -5.54 6.52 56.52 0.37 -5.17 16 29 C 0.03 0.43 5.27 -2.23 -0.01 0.41 16 30 H 0.04 0.24 7.87 -51.93 -0.41 -0.17 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.04 0.24 8.08 -51.93 -0.42 -0.18 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.46 7.87 -51.93 -0.41 0.05 16 35 H 0.08 0.55 7.92 -51.93 -0.41 0.14 16 36 H 0.40 3.12 8.09 -40.82 -0.33 2.79 16 37 H 0.07 0.87 6.84 -51.92 -0.36 0.52 16 38 H 0.08 0.82 7.18 -51.92 -0.37 0.45 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.67 7.18 -51.93 -0.37 0.30 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.10 1.70 7.25 -51.93 -0.38 1.32 16 44 H 0.04 0.61 6.81 -51.93 -0.35 0.26 16 45 H 0.05 0.81 7.78 -51.93 -0.40 0.40 16 46 H 0.09 1.45 8.08 -51.93 -0.42 1.03 16 47 H 0.37 7.95 5.76 -40.82 -0.24 7.71 16 48 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 49 H 0.05 0.68 7.04 -51.93 -0.37 0.31 16 50 H 0.09 1.42 6.65 -51.93 -0.35 1.08 16 LS Contribution 391.35 15.07 5.90 5.90 Total: -1.00 -35.69 391.35 -8.22 -43.90 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -8.05 Total: 11.45 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -0.01 Total: 7.85 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -0.67 Total: -56.24 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.66 Total: -27.86 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.71 Total: 14.99 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.69 -8.22 -43.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111628943.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.555 kcal (2) G-P(sol) polarization free energy of solvation -35.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds