Wall clock time and date at job start Tue Mar 31 2020 22:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99958 * 2 1 4 4 H 1.08996 * 109.47156 * 29.99950 * 3 2 1 5 5 C 1.53001 * 109.47027 * 269.99974 * 3 2 1 6 6 C 1.50700 * 109.47101 * 149.99835 * 3 2 1 7 7 O 1.21289 * 119.99801 * 5.00157 * 6 3 2 8 8 N 1.34773 * 120.00427 * 184.99737 * 6 3 2 9 9 C 1.46495 * 120.00236 * 179.97438 * 8 6 3 10 10 C 1.54156 * 112.51499 * 298.12618 * 9 8 6 11 11 C 1.54837 * 104.32694 * 260.86127 * 10 9 8 12 12 C 1.54846 * 102.73699 * 321.81576 * 11 10 9 13 13 C 1.54167 * 104.32083 * 38.18162 * 12 11 10 14 14 H 1.08995 * 112.50841 * 99.14876 * 13 12 11 15 15 C 1.54317 * 108.86229 * 223.67827 * 13 12 11 16 16 N 1.48814 * 104.70556 * 137.49732 * 15 13 12 17 17 C 1.46907 * 111.12967 * 200.84748 * 16 15 13 18 18 C 1.50698 * 109.47194 * 285.30997 * 17 16 15 19 19 O 1.21298 * 119.99937 * 359.97438 * 18 17 16 20 20 N 1.34776 * 119.99987 * 180.02562 * 18 17 16 21 21 C 1.37101 * 120.00018 * 180.02562 * 20 18 17 22 22 H 1.07995 * 119.99958 * 359.97438 * 21 20 18 23 23 C 1.38943 * 119.99807 * 180.02562 * 21 20 18 24 24 N 1.31411 * 119.99823 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00337 * 359.97438 * 23 21 20 26 26 H 1.48495 * 109.47301 * 90.00236 * 25 23 21 27 27 H 1.48509 * 109.47133 * 210.00405 * 25 23 21 28 28 H 1.48498 * 109.47142 * 330.00189 * 25 23 21 29 29 C 1.48533 * 104.06982 * 320.37959 * 16 15 13 30 30 H 1.09006 * 109.47248 * 59.99567 * 1 2 3 31 31 H 1.09002 * 109.46923 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47062 * 300.00164 * 1 2 3 33 33 H 1.08996 * 109.47133 * 299.99990 * 5 3 2 34 34 H 1.08994 * 109.47019 * 60.00222 * 5 3 2 35 35 H 1.08997 * 109.46779 * 180.02562 * 5 3 2 36 36 H 0.97007 * 119.99649 * 0.02562 * 8 6 3 37 37 H 1.09007 * 110.46374 * 19.57561 * 10 9 8 38 38 H 1.09007 * 110.46184 * 142.14786 * 10 9 8 39 39 H 1.09000 * 110.76063 * 203.50504 * 11 10 9 40 40 H 1.08999 * 110.75961 * 80.13142 * 11 10 9 41 41 H 1.09005 * 110.45795 * 279.47409 * 12 11 10 42 42 H 1.08998 * 110.46579 * 156.89401 * 12 11 10 43 43 H 1.09003 * 110.39559 * 256.28935 * 15 13 12 44 44 H 1.09001 * 110.39923 * 18.57880 * 15 13 12 45 45 H 1.09000 * 109.46928 * 45.31100 * 17 16 15 46 46 H 1.08996 * 109.46919 * 165.30670 * 17 16 15 47 47 H 0.96996 * 119.99742 * 359.97438 * 20 18 17 48 48 H 0.97001 * 120.00260 * 179.97438 * 24 23 21 49 49 H 1.09002 * 110.39914 * 280.77448 * 29 16 15 50 50 H 1.09004 * 110.39775 * 158.48650 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3386 1.2639 0.7104 7 8 3.7897 0.2045 1.0914 8 7 4.0255 2.4040 0.9224 9 6 5.3165 2.3636 1.6135 10 6 5.1983 1.8286 3.0544 11 6 5.1825 3.1016 3.9357 12 6 6.2009 4.0238 3.2215 13 6 5.9585 3.7693 1.7205 14 1 5.3349 4.5369 1.2624 15 6 7.3222 3.6387 1.0100 16 7 7.1528 2.4936 0.0748 17 6 8.4525 1.9263 -0.3086 18 6 9.1325 2.8462 -1.2895 19 8 8.5878 3.8733 -1.6356 20 7 10.3455 2.5273 -1.7831 21 6 10.9644 3.3646 -2.6751 22 1 10.4798 4.2794 -2.9825 23 6 12.2145 3.0355 -3.1842 24 7 12.8075 3.8377 -4.0396 25 14 13.0524 1.4528 -2.6529 26 1 12.6637 0.3539 -3.5729 27 1 14.5258 1.6348 -2.6939 28 1 12.6341 1.1115 -1.2696 29 6 6.3506 1.5114 0.8481 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 2.8829 1.0775 -1.9563 34 1 1.2569 1.8015 -1.9563 35 1 2.6614 2.7669 -1.4425 36 1 3.6646 3.2514 0.6180 37 1 4.2715 1.2681 3.1780 38 1 6.0576 1.2049 3.3011 39 1 5.5123 2.8738 4.9494 40 1 4.1909 3.5539 3.9435 41 1 7.2199 3.7499 3.4948 42 1 6.0070 5.0680 3.4671 43 1 7.5512 4.5497 0.4571 44 1 8.1090 3.4266 1.7340 45 1 9.0764 1.8155 0.5782 46 1 8.3010 0.9506 -0.7704 47 1 10.7808 1.7058 -1.5066 48 1 13.6805 3.6082 -4.3948 49 1 6.9864 0.9675 1.5467 50 1 5.8472 0.8177 0.1745 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111628943.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:10 Heat of formation + Delta-G solvation = -128.217539 kcal Electronic energy + Delta-G solvation = -30888.446973 eV Core-core repulsion = 26721.810353 eV Total energy + Delta-G solvation = -4166.636621 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.98612 -40.51297 -39.85061 -38.36236 -36.60523 -35.82011 -34.89119 -33.75463 -32.57082 -31.36225 -30.42460 -27.87954 -27.67121 -26.63181 -25.89138 -24.93393 -22.94267 -21.88637 -21.20325 -20.88825 -20.48375 -20.06460 -18.55346 -17.94938 -17.81475 -17.14049 -16.93647 -16.52046 -16.47154 -16.15852 -15.96651 -15.62960 -15.52047 -15.22909 -14.99289 -14.79507 -14.44876 -14.24666 -14.11595 -13.94428 -13.69109 -13.36600 -13.30496 -13.21255 -13.03478 -12.78212 -12.69057 -12.48423 -12.42188 -12.29669 -12.07729 -12.00183 -11.96642 -11.79386 -11.64677 -11.52135 -11.47643 -10.97308 -10.45747 -10.42550 -10.24872 -10.03504 -9.39016 -8.42013 -6.02278 1.28660 1.33874 1.42201 1.58736 1.88211 1.94141 2.21420 2.58825 3.01494 3.12029 3.18061 3.30258 3.47059 3.68644 3.80724 3.92897 4.04137 4.07733 4.11341 4.24946 4.30479 4.33740 4.35084 4.41331 4.46379 4.49412 4.55818 4.58585 4.65922 4.72626 4.75107 4.79232 4.86899 4.88982 4.97840 5.02714 5.13011 5.19576 5.20184 5.24684 5.43911 5.51590 5.59663 5.84257 5.85573 5.97756 6.09286 6.58300 6.59306 6.87494 7.25776 7.38829 7.95449 8.75534 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013697 B = 0.002770 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.717414 B =10105.091958 C =11159.665092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.396 6.396 3 C 0.073 3.927 4 H 0.119 0.881 5 C -0.167 4.167 6 C 0.511 3.489 7 O -0.561 6.561 8 N -0.695 5.695 9 C 0.178 3.822 10 C -0.118 4.118 11 C -0.112 4.112 12 C -0.114 4.114 13 C -0.084 4.084 14 H 0.102 0.898 15 C 0.040 3.960 16 N -0.506 5.506 17 C 0.041 3.959 18 C 0.457 3.543 19 O -0.602 6.602 20 N -0.594 5.594 21 C -0.325 4.325 22 H 0.057 0.943 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.962 3.038 26 H -0.259 1.259 27 H -0.273 1.273 28 H -0.234 1.234 29 C 0.035 3.965 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.044 0.956 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.414 0.586 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.081 0.919 46 H 0.107 0.893 47 H 0.388 0.612 48 H 0.279 0.721 49 H 0.059 0.941 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.141 -5.267 17.687 29.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.315 6.315 3 C 0.012 3.988 4 H 0.136 0.864 5 C -0.225 4.225 6 C 0.298 3.702 7 O -0.438 6.438 8 N -0.348 5.348 9 C 0.091 3.909 10 C -0.157 4.157 11 C -0.150 4.150 12 C -0.151 4.151 13 C -0.103 4.103 14 H 0.120 0.880 15 C -0.087 4.087 16 N -0.230 5.230 17 C -0.091 4.091 18 C 0.244 3.756 19 O -0.485 6.485 20 N -0.236 5.236 21 C -0.454 4.454 22 H 0.076 0.924 23 C -0.213 4.213 24 N -0.574 5.574 25 Si 0.782 3.218 26 H -0.184 1.184 27 H -0.198 1.198 28 H -0.157 1.157 29 C -0.093 4.093 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.251 0.749 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.099 0.901 46 H 0.126 0.874 47 H 0.223 0.777 48 H 0.088 0.912 49 H 0.077 0.923 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -23.170 -5.300 17.072 29.264 hybrid contribution 1.197 -0.409 -0.144 1.273 sum -21.973 -5.709 16.928 28.319 Atomic orbital electron populations 1.23080 0.78726 1.04088 1.01443 1.88018 1.21868 1.26445 1.95147 1.22033 0.92536 0.86996 0.97270 0.86356 1.22217 1.03914 1.02163 0.94182 1.20894 0.86914 0.83721 0.78705 1.90690 1.70347 1.31205 1.51572 1.45728 1.20194 1.09727 1.59153 1.21406 0.82321 0.95341 0.91832 1.22646 1.02403 0.98332 0.92298 1.22494 0.99770 0.94005 0.98720 1.22483 0.99993 1.01221 0.91450 1.22713 0.94969 0.95267 0.97368 0.87966 1.23355 0.96961 0.95004 0.93422 1.65138 1.13792 1.06787 1.37250 1.21995 0.91396 0.97588 0.98102 1.20684 0.81716 0.88176 0.85018 1.90520 1.65673 1.28979 1.63339 1.42052 1.17670 1.22324 1.41586 1.18987 1.01625 1.04059 1.20710 0.92440 1.26059 0.96648 1.02534 0.96031 1.69794 1.16845 1.39442 1.31344 0.85406 0.78376 0.77569 0.80446 1.18384 1.19794 1.15742 1.23523 0.95086 0.94505 0.96212 0.92203 0.88798 0.92464 0.93635 0.89298 0.89541 0.74860 0.91920 0.90955 0.89958 0.90354 0.91105 0.89405 0.91869 0.92946 0.90119 0.87446 0.77705 0.91150 0.92320 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.82 113.37 1.23 1.50 16 2 O -0.40 -8.57 9.89 -129.99 -1.29 -9.86 16 3 C 0.07 1.25 3.13 29.85 0.09 1.34 16 4 H 0.12 1.16 7.79 -2.39 -0.02 1.14 16 5 C -0.17 -2.60 9.48 71.98 0.68 -1.92 16 6 C 0.51 11.88 6.24 87.66 0.55 12.43 16 7 O -0.56 -17.90 14.03 15.93 0.22 -17.67 16 8 N -0.69 -13.32 5.23 -416.22 -2.18 -15.49 16 9 C 0.18 3.83 0.92 5.09 0.00 3.83 16 10 C -0.12 -2.25 5.66 31.61 0.18 -2.07 16 11 C -0.11 -1.51 6.90 31.85 0.22 -1.29 16 12 C -0.11 -1.70 6.36 31.62 0.20 -1.50 16 13 C -0.08 -1.69 3.70 -9.30 -0.03 -1.72 16 14 H 0.10 1.86 7.72 -2.39 -0.02 1.84 16 15 C 0.04 1.16 5.47 86.38 0.47 1.63 16 16 N -0.51 -16.39 4.98 -885.65 -4.41 -20.80 16 17 C 0.04 1.39 5.32 85.55 0.46 1.85 16 18 C 0.46 21.38 7.63 87.66 0.67 22.05 16 19 O -0.60 -33.68 14.82 -3.08 -0.05 -33.73 16 20 N -0.59 -28.94 5.09 -306.99 -1.56 -30.51 16 21 C -0.32 -19.29 10.16 84.04 0.85 -18.44 16 22 H 0.06 4.04 7.39 -2.91 -0.02 4.02 16 23 C -0.01 -0.79 5.50 84.92 0.47 -0.33 16 24 N -0.93 -56.79 13.96 21.66 0.30 -56.49 16 25 Si 0.96 39.79 27.74 68.60 1.90 41.69 16 26 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 27 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 28 H -0.23 -8.26 6.52 99.48 0.65 -7.61 16 29 C 0.04 0.97 5.27 86.43 0.46 1.42 16 30 H 0.06 0.51 7.87 -2.38 -0.02 0.49 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 0.50 8.08 -2.39 -0.02 0.48 16 33 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.09 1.01 7.87 -2.39 -0.02 0.99 16 35 H 0.09 1.13 7.92 -2.39 -0.02 1.11 16 36 H 0.41 5.65 8.09 -92.70 -0.75 4.90 16 37 H 0.06 1.38 6.84 -2.38 -0.02 1.36 16 38 H 0.07 1.43 7.18 -2.38 -0.02 1.41 16 39 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.07 1.11 7.18 -2.38 -0.02 1.10 16 42 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.06 2.26 7.25 -2.39 -0.02 2.24 16 44 H 0.05 1.40 6.81 -2.39 -0.02 1.38 16 45 H 0.08 2.31 7.78 -2.39 -0.02 2.29 16 46 H 0.11 3.29 8.08 -2.39 -0.02 3.27 16 47 H 0.39 15.89 5.76 -92.71 -0.53 15.35 16 48 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 49 H 0.06 1.50 7.04 -2.39 -0.02 1.48 16 50 H 0.07 2.15 6.65 -2.38 -0.02 2.13 16 Total: -1.00 -84.22 391.35 -0.94 -85.15 By element: Atomic # 1 Polarization: 39.28 SS G_CDS: -0.38 Total: 38.90 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: 6.49 Total: 18.80 kcal Atomic # 7 Polarization: -115.44 SS G_CDS: -7.85 Total: -123.28 kcal Atomic # 8 Polarization: -60.15 SS G_CDS: -1.11 Total: -61.26 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 1.90 Total: 41.69 kcal Total: -84.22 -0.94 -85.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111628943.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.065 kcal (2) G-P(sol) polarization free energy of solvation -84.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds