Wall clock time and date at job start Tue Mar 31 2020 22:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 120.00247 * 2 1 4 4 C 1.53006 * 109.46866 * 124.99980 * 3 2 1 5 5 O 1.42906 * 109.46748 * 179.97438 * 4 3 2 6 6 C 1.42898 * 113.99821 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.46985 * 30.00310 * 6 5 4 8 8 C 1.52999 * 109.47444 * 270.00482 * 6 5 4 9 9 C 1.50693 * 109.47065 * 150.00297 * 6 5 4 10 10 O 1.21283 * 120.00266 * 5.00204 * 9 6 5 11 11 N 1.34781 * 120.00328 * 185.00305 * 9 6 5 12 12 C 1.47087 * 120.87397 * 359.71887 * 11 9 6 13 13 C 1.53700 * 108.27329 * 128.76139 * 12 11 9 14 14 N 1.46892 * 109.25979 * 54.07559 * 13 12 11 15 15 C 1.46901 * 111.00342 * 172.60740 * 14 13 12 16 16 C 1.50694 * 109.47299 * 294.30910 * 15 14 13 17 17 O 1.21301 * 120.00078 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00217 * 179.97438 * 16 15 14 19 19 C 1.37098 * 120.00101 * 179.97438 * 18 16 15 20 20 H 1.07999 * 120.00193 * 0.02562 * 19 18 16 21 21 C 1.38947 * 120.00125 * 180.02562 * 19 18 16 22 22 N 1.31416 * 120.00084 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00263 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47151 * 59.99869 * 23 21 19 25 25 H 1.48497 * 109.47264 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47132 * 300.00019 * 23 21 19 27 27 C 1.46906 * 111.27327 * 296.75974 * 14 13 12 28 28 C 1.47075 * 120.88311 * 180.02562 * 11 9 6 29 29 H 1.07998 * 119.99939 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99621 * 0.02562 * 1 2 3 31 31 H 1.08001 * 119.99621 * 179.97438 * 2 1 3 32 32 H 1.08993 * 109.47512 * 5.00103 * 3 2 1 33 33 H 1.09000 * 109.47247 * 244.99812 * 3 2 1 34 34 H 1.09000 * 109.47050 * 299.99952 * 4 3 2 35 35 H 1.09001 * 109.46801 * 60.00064 * 4 3 2 36 36 H 1.09003 * 109.46889 * 299.99886 * 8 6 5 37 37 H 1.09004 * 109.47118 * 59.99436 * 8 6 5 38 38 H 1.08995 * 109.47513 * 179.97438 * 8 6 5 39 39 H 1.08996 * 109.62710 * 248.52191 * 12 11 9 40 40 H 1.08993 * 109.63081 * 9.10481 * 12 11 9 41 41 H 1.09005 * 109.64432 * 294.07717 * 13 12 11 42 42 H 1.08996 * 109.42208 * 173.94725 * 13 12 11 43 43 H 1.09007 * 109.46614 * 54.30742 * 15 14 13 44 44 H 1.08998 * 109.47406 * 174.30191 * 15 14 13 45 45 H 0.97000 * 119.99865 * 0.02562 * 18 16 15 46 46 H 0.96994 * 120.00150 * 179.97438 * 22 21 19 47 47 H 1.09000 * 109.49017 * 303.14524 * 27 14 13 48 48 H 1.08996 * 109.51407 * 183.07590 * 27 14 13 49 49 H 1.08989 * 109.63003 * 350.89437 * 28 11 9 50 50 H 1.09006 * 109.62778 * 111.47934 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3329 1.1817 5 8 3.7501 2.5703 1.1813 6 6 4.6888 2.6994 2.2510 7 1 5.0649 1.7138 2.5253 8 6 4.0005 3.3370 3.4595 9 6 5.8368 3.5701 1.8095 10 8 5.8070 4.1081 0.7229 11 7 6.8967 3.7511 2.6221 12 6 6.9503 3.1130 3.9463 13 6 8.2923 2.3743 4.0713 14 7 9.3887 3.3101 3.7885 15 6 10.6925 2.6932 4.0668 16 6 10.8148 2.4219 5.5441 17 8 9.9054 2.7142 6.2918 18 7 11.9345 1.8545 6.0347 19 6 12.0460 1.6082 7.3788 20 1 11.2363 1.8685 8.0444 21 6 13.2006 1.0237 7.8846 22 7 14.1861 0.7075 7.0747 23 14 13.3522 0.6875 9.7158 24 1 12.2679 -0.2335 10.1414 25 1 14.6704 0.0644 9.9972 26 1 13.2390 1.9649 10.4647 27 6 9.3244 3.8044 2.4066 28 6 8.0273 4.5973 2.2111 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5399 0.9354 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3588 2.1316 0.0896 33 1 2.6214 1.4025 -0.9314 34 1 2.4773 1.2355 2.1131 35 1 3.7400 0.5063 1.0921 36 1 3.6243 4.3226 3.1852 37 1 3.1700 2.7072 3.7788 38 1 4.7163 3.4351 4.2755 39 1 6.8741 3.8741 4.7228 40 1 6.1293 2.4028 4.0440 41 1 8.3247 1.5501 3.3587 42 1 8.3986 1.9847 5.0837 43 1 10.7755 1.7555 3.5171 44 1 11.4884 3.3691 3.7544 45 1 12.6619 1.6211 5.4369 46 1 14.9922 0.2998 7.4279 47 1 9.3425 2.9603 1.7172 48 1 10.1793 4.4518 2.2114 49 1 7.9187 4.8687 1.1612 50 1 8.0525 5.4980 2.8245 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112676247.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:58 Heat of formation + Delta-G solvation = -79.460846 kcal Electronic energy + Delta-G solvation = -29614.382169 eV Core-core repulsion = 25449.859797 eV Total energy + Delta-G solvation = -4164.522372 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.55198 -38.93948 -38.13573 -37.14525 -35.44689 -34.65123 -33.85311 -32.25862 -31.30887 -30.72958 -29.34189 -28.77046 -26.04041 -24.69887 -23.78378 -23.68960 -23.06807 -21.10923 -20.21352 -19.36909 -19.08695 -17.93750 -17.56108 -16.96462 -16.32028 -16.07083 -15.87533 -15.44240 -15.16763 -15.08710 -14.85224 -14.55943 -14.46023 -14.07189 -13.97962 -13.69418 -13.64567 -13.47570 -13.07655 -12.91108 -12.59595 -12.54071 -12.24172 -11.96576 -11.67557 -11.58862 -11.53233 -11.51426 -11.44994 -11.29985 -11.15828 -11.09528 -10.85238 -10.47905 -10.25903 -10.16119 -9.76969 -9.57899 -9.50955 -8.90441 -8.42221 -8.03605 -7.94093 -6.46153 -3.87313 1.81617 2.48622 2.57975 3.16291 3.22895 3.26562 3.49967 3.83409 3.89816 4.18403 4.25091 4.52450 4.55030 4.66767 4.73601 4.81042 4.84658 4.92555 4.97117 5.03451 5.05884 5.15577 5.19091 5.25102 5.32551 5.36848 5.40095 5.42807 5.45525 5.57701 5.66159 5.69451 5.74766 5.79324 5.84997 5.86765 6.07263 6.11958 6.20463 6.20667 6.32555 6.40687 6.79391 7.08988 7.25120 7.32822 7.50499 8.00978 8.06328 8.56205 9.12947 9.49110 10.00159 10.71296 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016828 B = 0.001978 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.445014 B =14155.083210 C =15068.293534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.154 4.154 3 C -0.093 4.093 4 C 0.063 3.937 5 O -0.358 6.358 6 C 0.073 3.927 7 H 0.086 0.914 8 C -0.179 4.179 9 C 0.517 3.483 10 O -0.527 6.527 11 N -0.610 5.610 12 C 0.109 3.891 13 C 0.038 3.962 14 N -0.514 5.514 15 C 0.046 3.954 16 C 0.442 3.558 17 O -0.579 6.579 18 N -0.562 5.562 19 C -0.301 4.301 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.901 5.901 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 C 0.040 3.960 28 C 0.120 3.880 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.027 0.973 42 H 0.117 0.883 43 H 0.048 0.952 44 H 0.090 0.910 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.035 0.965 48 H 0.088 0.912 49 H 0.094 0.906 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.010 0.174 -11.998 22.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.172 4.172 3 C -0.130 4.130 4 C -0.013 4.013 5 O -0.276 6.276 6 C 0.012 3.988 7 H 0.103 0.897 8 C -0.236 4.236 9 C 0.304 3.696 10 O -0.403 6.403 11 N -0.345 5.345 12 C -0.014 4.014 13 C -0.091 4.091 14 N -0.239 5.239 15 C -0.085 4.085 16 C 0.228 3.772 17 O -0.464 6.464 18 N -0.198 5.198 19 C -0.430 4.430 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.088 4.088 28 C -0.002 4.002 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.129 0.871 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.046 0.954 42 H 0.135 0.865 43 H 0.066 0.934 44 H 0.109 0.891 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.053 0.947 48 H 0.106 0.894 49 H 0.112 0.888 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.534 1.112 -11.874 22.887 hybrid contribution 0.912 -1.370 0.256 1.666 sum -18.621 -0.258 -11.618 21.950 Atomic orbital electron populations 1.23909 0.95870 1.02070 1.00642 1.22815 0.96031 0.98022 1.00316 1.20636 0.97864 0.95882 0.98589 1.22553 0.94143 0.86104 0.98532 1.88015 1.53736 1.37304 1.48578 1.21846 0.89340 0.99122 0.88517 0.89662 1.22417 1.01888 1.02546 0.96782 1.20330 0.82850 0.81916 0.84510 1.90692 1.79184 1.48951 1.21458 1.48185 1.18985 1.49583 1.17770 1.22206 0.97857 0.97503 0.83793 1.22751 0.89683 0.92678 1.03967 1.61495 1.02163 1.38611 1.21634 1.21853 0.91537 0.98468 0.96610 1.19703 0.84538 0.84114 0.88849 1.90471 1.39942 1.56565 1.59417 1.41868 1.15511 1.53443 1.09006 1.19643 1.02528 1.37474 0.83359 0.87912 1.25268 0.95218 0.97075 1.00315 1.69602 1.06528 1.42416 1.35638 0.85917 0.77340 0.78814 0.82138 1.19920 1.20987 1.19873 1.22525 0.98100 0.98940 0.89282 1.21712 0.83610 0.93179 1.01709 0.88275 0.88410 0.87130 0.90524 0.89905 0.92912 0.93029 0.91016 0.91146 0.89947 0.89595 0.89584 0.95448 0.86529 0.93449 0.89142 0.77476 0.91779 0.94689 0.89387 0.88805 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.13 14.32 29.01 0.42 -0.71 16 2 C -0.15 -1.02 9.52 -36.03 -0.34 -1.36 16 3 C -0.09 -0.73 6.03 -27.88 -0.17 -0.90 16 4 C 0.06 0.55 5.73 37.16 0.21 0.76 16 5 O -0.36 -4.29 9.53 -55.09 -0.52 -4.82 16 6 C 0.07 0.78 2.30 -27.89 -0.06 0.72 16 7 H 0.09 0.76 7.06 -51.93 -0.37 0.40 16 8 C -0.18 -1.55 9.11 37.16 0.34 -1.21 16 9 C 0.52 7.07 7.13 -10.99 -0.08 6.99 16 10 O -0.53 -9.14 15.96 -14.31 -0.23 -9.36 16 11 N -0.61 -7.67 3.00 -172.16 -0.52 -8.19 16 12 C 0.11 1.29 5.10 -3.36 -0.02 1.27 16 13 C 0.04 0.55 5.27 -3.46 -0.02 0.53 16 14 N -0.51 -7.95 4.37 -235.44 -1.03 -8.98 16 15 C 0.05 0.78 5.45 -4.98 -0.03 0.75 16 16 C 0.44 9.83 7.44 -10.99 -0.08 9.75 16 17 O -0.58 -14.50 13.91 5.54 0.08 -14.42 16 18 N -0.56 -13.64 5.29 -10.96 -0.06 -13.70 16 19 C -0.30 -8.08 9.68 -14.93 -0.14 -8.22 16 20 H 0.10 2.88 7.16 -52.49 -0.38 2.50 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -23.91 13.05 55.50 0.72 -23.18 16 23 Si 0.93 20.49 29.55 -169.99 -5.02 15.46 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 27 C 0.04 0.51 5.62 -3.67 -0.02 0.49 16 28 C 0.12 1.49 6.60 -3.58 -0.02 1.46 16 29 H 0.10 0.48 8.06 -52.49 -0.42 0.06 16 30 H 0.10 0.55 7.84 -52.49 -0.41 0.14 16 31 H 0.11 0.64 8.06 -52.49 -0.42 0.22 16 32 H 0.08 0.61 7.79 -51.93 -0.40 0.20 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.39 7.87 -51.93 -0.41 -0.02 16 35 H 0.05 0.41 8.09 -51.93 -0.42 -0.01 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.50 7.87 -51.93 -0.41 0.09 16 38 H 0.08 0.66 5.43 -51.93 -0.28 0.38 16 39 H 0.09 1.06 8.13 -51.93 -0.42 0.63 16 40 H 0.09 0.80 4.83 -51.93 -0.25 0.54 16 41 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.12 2.03 5.77 -51.93 -0.30 1.73 16 43 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 44 H 0.09 1.38 7.97 -51.93 -0.41 0.96 16 45 H 0.39 9.16 7.90 -40.82 -0.32 8.84 16 46 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 47 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.09 0.98 7.99 -51.93 -0.41 0.56 16 49 H 0.09 1.17 7.06 -51.94 -0.37 0.81 16 50 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 402.79 15.07 6.07 6.07 Total: -1.00 -32.58 402.79 -8.71 -41.29 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -8.08 Total: 9.02 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: -0.12 Total: 10.81 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: -0.88 Total: -54.05 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.68 Total: -28.60 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.58 -8.71 -41.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112676247.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.173 kcal (2) G-P(sol) polarization free energy of solvation -32.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds