Wall clock time and date at job start Tue Mar 31 2020 22:35:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31004 * 1
3 3 C 1.50699 * 120.00247 * 2 1
4 4 C 1.53006 * 109.46866 * 124.99980 * 3 2 1
5 5 O 1.42906 * 109.46748 * 179.97438 * 4 3 2
6 6 C 1.42898 * 113.99821 * 179.97438 * 5 4 3
7 7 H 1.09003 * 109.46985 * 30.00310 * 6 5 4
8 8 C 1.52999 * 109.47444 * 270.00482 * 6 5 4
9 9 C 1.50693 * 109.47065 * 150.00297 * 6 5 4
10 10 O 1.21283 * 120.00266 * 5.00204 * 9 6 5
11 11 N 1.34781 * 120.00328 * 185.00305 * 9 6 5
12 12 C 1.47087 * 120.87397 * 359.71887 * 11 9 6
13 13 C 1.53700 * 108.27329 * 128.76139 * 12 11 9
14 14 N 1.46892 * 109.25979 * 54.07559 * 13 12 11
15 15 C 1.46901 * 111.00342 * 172.60740 * 14 13 12
16 16 C 1.50694 * 109.47299 * 294.30910 * 15 14 13
17 17 O 1.21301 * 120.00078 * 359.97438 * 16 15 14
18 18 N 1.34776 * 120.00217 * 179.97438 * 16 15 14
19 19 C 1.37098 * 120.00101 * 179.97438 * 18 16 15
20 20 H 1.07999 * 120.00193 * 0.02562 * 19 18 16
21 21 C 1.38947 * 120.00125 * 180.02562 * 19 18 16
22 22 N 1.31416 * 120.00084 * 0.02562 * 21 19 18
23 23 Si 1.86799 * 120.00263 * 180.02562 * 21 19 18
24 24 H 1.48497 * 109.47151 * 59.99869 * 23 21 19
25 25 H 1.48497 * 109.47264 * 180.02562 * 23 21 19
26 26 H 1.48506 * 109.47132 * 300.00019 * 23 21 19
27 27 C 1.46906 * 111.27327 * 296.75974 * 14 13 12
28 28 C 1.47075 * 120.88311 * 180.02562 * 11 9 6
29 29 H 1.07998 * 119.99939 * 179.97438 * 1 2 3
30 30 H 1.08001 * 119.99621 * 0.02562 * 1 2 3
31 31 H 1.08001 * 119.99621 * 179.97438 * 2 1 3
32 32 H 1.08993 * 109.47512 * 5.00103 * 3 2 1
33 33 H 1.09000 * 109.47247 * 244.99812 * 3 2 1
34 34 H 1.09000 * 109.47050 * 299.99952 * 4 3 2
35 35 H 1.09001 * 109.46801 * 60.00064 * 4 3 2
36 36 H 1.09003 * 109.46889 * 299.99886 * 8 6 5
37 37 H 1.09004 * 109.47118 * 59.99436 * 8 6 5
38 38 H 1.08995 * 109.47513 * 179.97438 * 8 6 5
39 39 H 1.08996 * 109.62710 * 248.52191 * 12 11 9
40 40 H 1.08993 * 109.63081 * 9.10481 * 12 11 9
41 41 H 1.09005 * 109.64432 * 294.07717 * 13 12 11
42 42 H 1.08996 * 109.42208 * 173.94725 * 13 12 11
43 43 H 1.09007 * 109.46614 * 54.30742 * 15 14 13
44 44 H 1.08998 * 109.47406 * 174.30191 * 15 14 13
45 45 H 0.97000 * 119.99865 * 0.02562 * 18 16 15
46 46 H 0.96994 * 120.00150 * 179.97438 * 22 21 19
47 47 H 1.09000 * 109.49017 * 303.14524 * 27 14 13
48 48 H 1.08996 * 109.51407 * 183.07590 * 27 14 13
49 49 H 1.08989 * 109.63003 * 350.89437 * 28 11 9
50 50 H 1.09006 * 109.62778 * 111.47934 * 28 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0636 1.3051 0.0000
4 6 3.0351 1.3329 1.1817
5 8 3.7501 2.5703 1.1813
6 6 4.6888 2.6994 2.2510
7 1 5.0649 1.7138 2.5253
8 6 4.0005 3.3370 3.4595
9 6 5.8368 3.5701 1.8095
10 8 5.8070 4.1081 0.7229
11 7 6.8967 3.7511 2.6221
12 6 6.9503 3.1130 3.9463
13 6 8.2923 2.3743 4.0713
14 7 9.3887 3.3101 3.7885
15 6 10.6925 2.6932 4.0668
16 6 10.8148 2.4219 5.5441
17 8 9.9054 2.7142 6.2918
18 7 11.9345 1.8545 6.0347
19 6 12.0460 1.6082 7.3788
20 1 11.2363 1.8685 8.0444
21 6 13.2006 1.0237 7.8846
22 7 14.1861 0.7075 7.0747
23 14 13.3522 0.6875 9.7158
24 1 12.2679 -0.2335 10.1414
25 1 14.6704 0.0644 9.9972
26 1 13.2390 1.9649 10.4647
27 6 9.3244 3.8044 2.4066
28 6 8.0273 4.5973 2.2111
29 1 -0.5400 -0.9353 -0.0004
30 1 -0.5399 0.9354 -0.0004
31 1 1.8500 -0.9354 0.0004
32 1 1.3588 2.1316 0.0896
33 1 2.6214 1.4025 -0.9314
34 1 2.4773 1.2355 2.1131
35 1 3.7400 0.5063 1.0921
36 1 3.6243 4.3226 3.1852
37 1 3.1700 2.7072 3.7788
38 1 4.7163 3.4351 4.2755
39 1 6.8741 3.8741 4.7228
40 1 6.1293 2.4028 4.0440
41 1 8.3247 1.5501 3.3587
42 1 8.3986 1.9847 5.0837
43 1 10.7755 1.7555 3.5171
44 1 11.4884 3.3691 3.7544
45 1 12.6619 1.6211 5.4369
46 1 14.9922 0.2998 7.4279
47 1 9.3425 2.9603 1.7172
48 1 10.1793 4.4518 2.2114
49 1 7.9187 4.8687 1.1612
50 1 8.0525 5.4980 2.8245
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001112676247.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:35:58
Heat of formation + Delta-G solvation = -101.532877 kcal
Electronic energy + Delta-G solvation = -29615.339285 eV
Core-core repulsion = 25449.859797 eV
Total energy + Delta-G solvation = -4165.479487 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-41.58763 -40.35797 -39.22159 -38.39463 -36.11054 -36.01329 -35.49960 -33.25115
-33.12785 -31.68562 -30.19480 -29.83043 -27.49663 -26.00081 -24.95654 -24.70503
-23.82778 -22.12933 -21.04909 -20.76420 -20.14157 -19.82594 -18.50523 -17.88683
-17.72917 -17.15891 -16.72054 -16.58075 -16.39442 -16.29122 -16.03828 -15.86065
-15.42186 -15.40115 -15.31174 -15.20075 -14.47927 -14.41116 -14.13215 -13.83887
-13.58594 -13.51161 -13.35573 -13.25094 -13.11891 -12.87530 -12.77751 -12.41076
-12.36560 -12.32594 -12.21982 -12.14222 -12.11014 -12.02366 -11.98158 -11.40871
-10.99809 -10.51712 -10.32191 -10.27409 -9.97724 -9.80703 -9.22550 -8.43380
-5.91576 1.31881 1.41796 1.44121 1.45309 1.54367 1.66443 2.08745
2.29975 2.65992 2.77674 3.23885 3.35054 3.38319 3.77701 3.86476
3.90974 3.96590 4.03752 4.12598 4.14318 4.19592 4.23501 4.26668
4.41194 4.43271 4.44418 4.46771 4.51347 4.60257 4.63148 4.70788
4.75730 4.81407 4.87904 4.92224 5.01983 5.02961 5.09827 5.16914
5.35800 5.44213 5.72690 5.81034 5.84239 6.03606 6.07072 6.13594
6.31852 6.63627 7.02985 7.16221 7.60393 8.15184 8.73645
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.016828 B = 0.001978 C = 0.001858
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1663.445014 B =14155.083210 C =15068.293534
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C -0.163 4.163
3 C -0.091 4.091
4 C 0.060 3.940
5 O -0.386 6.386
6 C 0.073 3.927
7 H 0.107 0.893
8 C -0.173 4.173
9 C 0.513 3.487
10 O -0.571 6.571
11 N -0.606 5.606
12 C 0.117 3.883
13 C 0.039 3.961
14 N -0.530 5.530
15 C 0.058 3.942
16 C 0.444 3.556
17 O -0.609 6.609
18 N -0.575 5.575
19 C -0.330 4.330
20 H 0.082 0.918
21 C -0.014 4.014
22 N -0.922 5.922
23 Si 0.991 3.009
24 H -0.271 1.271
25 H -0.274 1.274
26 H -0.273 1.273
27 C 0.047 3.953
28 C 0.119 3.881
29 H 0.112 0.888
30 H 0.099 0.901
31 H 0.120 0.880
32 H 0.071 0.929
33 H 0.071 0.929
34 H 0.068 0.932
35 H 0.059 0.941
36 H 0.058 0.942
37 H 0.091 0.909
38 H 0.090 0.910
39 H 0.082 0.918
40 H 0.115 0.885
41 H 0.035 0.965
42 H 0.086 0.914
43 H 0.065 0.935
44 H 0.111 0.889
45 H 0.395 0.605
46 H 0.276 0.724
47 H 0.038 0.962
48 H 0.106 0.894
49 H 0.092 0.908
50 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.745 -0.555 -11.894 23.057
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C -0.181 4.181
3 C -0.128 4.128
4 C -0.016 4.016
5 O -0.305 6.305
6 C 0.012 3.988
7 H 0.125 0.875
8 C -0.230 4.230
9 C 0.302 3.698
10 O -0.449 6.449
11 N -0.341 5.341
12 C -0.005 4.005
13 C -0.090 4.090
14 N -0.255 5.255
15 C -0.073 4.073
16 C 0.231 3.769
17 O -0.495 6.495
18 N -0.212 5.212
19 C -0.459 4.459
20 H 0.100 0.900
21 C -0.213 4.213
22 N -0.563 5.563
23 Si 0.815 3.185
24 H -0.196 1.196
25 H -0.199 1.199
26 H -0.198 1.198
27 C -0.081 4.081
28 C -0.003 4.003
29 H 0.130 0.870
30 H 0.117 0.883
31 H 0.138 0.862
32 H 0.090 0.910
33 H 0.089 0.911
34 H 0.087 0.913
35 H 0.078 0.922
36 H 0.077 0.923
37 H 0.109 0.891
38 H 0.108 0.892
39 H 0.101 0.899
40 H 0.133 0.867
41 H 0.053 0.947
42 H 0.105 0.895
43 H 0.083 0.917
44 H 0.129 0.871
45 H 0.228 0.772
46 H 0.085 0.915
47 H 0.056 0.944
48 H 0.124 0.876
49 H 0.110 0.890
50 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges -20.269 0.379 -11.774 23.444
hybrid contribution 1.070 -1.109 0.169 1.550
sum -19.199 -0.729 -11.605 22.446
Atomic orbital electron populations
1.24083 0.95771 1.02822 0.99471 1.22816 0.96263 0.97652 1.01343
1.20614 0.97689 0.96591 0.97942 1.22730 0.94309 0.85131 0.99466
1.87989 1.54185 1.38992 1.49311 1.21948 0.88503 0.99591 0.88753
0.87499 1.22395 1.02565 1.02157 0.95920 1.20930 0.83452 0.81604
0.83841 1.90668 1.80108 1.50860 1.23301 1.48239 1.18847 1.49156
1.17826 1.22205 0.97369 0.97768 0.83190 1.22666 0.90781 0.93219
1.02304 1.61478 1.01628 1.38807 1.23607 1.21721 0.93156 1.00007
0.92398 1.20661 0.83141 0.82020 0.91083 1.90454 1.40763 1.57175
1.61111 1.41939 1.16415 1.54521 1.08343 1.19627 1.02654 1.39052
0.84581 0.89992 1.26011 0.94591 0.96459 1.04285 1.69669 1.06816
1.42669 1.37126 0.85011 0.77646 0.78582 0.77252 1.19582 1.19886
1.19803 1.22540 0.98875 0.99203 0.87487 1.21726 0.83581 0.93330
1.01680 0.86967 0.88275 0.86241 0.90981 0.91085 0.91334 0.92244
0.92253 0.89063 0.89178 0.89943 0.86720 0.94663 0.89543 0.91734
0.87069 0.77152 0.91451 0.94374 0.87608 0.89001 0.90142
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.92 14.32 67.78 0.97 -0.95 16
2 C -0.16 -1.93 9.52 25.64 0.24 -1.69 16
3 C -0.09 -1.37 6.03 29.85 0.18 -1.19 16
4 C 0.06 0.94 5.73 71.98 0.41 1.35 16
5 O -0.39 -8.89 9.53 -129.99 -1.24 -10.13 16
6 C 0.07 1.45 2.30 29.85 0.07 1.51 16
7 H 0.11 1.62 7.06 -2.39 -0.02 1.60 16
8 C -0.17 -2.65 9.11 71.98 0.66 -1.99 16
9 C 0.51 13.55 7.13 87.65 0.62 14.17 16
10 O -0.57 -19.79 15.96 15.95 0.25 -19.53 16
11 N -0.61 -14.44 3.00 -816.97 -2.45 -16.89 16
12 C 0.12 2.56 5.10 86.50 0.44 3.01 16
13 C 0.04 1.08 5.27 86.54 0.46 1.54 16
14 N -0.53 -15.60 4.37 -898.79 -3.93 -19.52 16
15 C 0.06 1.87 5.45 85.55 0.47 2.33 16
16 C 0.44 19.70 7.44 87.66 0.65 20.35 16
17 O -0.61 -30.85 13.91 -3.09 -0.04 -30.89 16
18 N -0.57 -28.15 5.29 -306.99 -1.62 -29.77 16
19 C -0.33 -17.98 9.68 84.04 0.81 -17.16 16
20 H 0.08 4.73 7.16 -2.91 -0.02 4.70 16
21 C -0.01 -0.72 5.50 84.92 0.47 -0.25 16
22 N -0.92 -48.69 13.05 21.66 0.28 -48.41 16
23 Si 0.99 41.76 29.55 68.60 2.03 43.79 16
24 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16
25 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16
26 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16
27 C 0.05 1.09 5.62 86.40 0.49 1.58 16
28 C 0.12 2.80 6.60 86.36 0.57 3.37 16
29 H 0.11 0.87 8.06 -2.91 -0.02 0.84 16
30 H 0.10 0.98 7.84 -2.91 -0.02 0.96 16
31 H 0.12 1.18 8.06 -2.91 -0.02 1.16 16
32 H 0.07 1.12 7.79 -2.39 -0.02 1.10 16
33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16
34 H 0.07 0.85 7.87 -2.39 -0.02 0.83 16
35 H 0.06 0.83 8.09 -2.39 -0.02 0.81 16
36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16
37 H 0.09 1.03 7.87 -2.39 -0.02 1.01 16
38 H 0.09 1.22 5.43 -2.39 -0.01 1.21 16
39 H 0.08 1.91 8.13 -2.39 -0.02 1.89 16
40 H 0.11 1.83 4.83 -2.39 -0.01 1.82 16
41 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16
42 H 0.09 3.00 5.77 -2.39 -0.01 2.99 16
43 H 0.06 1.88 8.13 -2.38 -0.02 1.86 16
44 H 0.11 3.13 7.97 -2.39 -0.02 3.11 16
45 H 0.39 18.54 7.90 -92.71 -0.73 17.81 16
46 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16
47 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16
48 H 0.11 2.08 7.99 -2.39 -0.02 2.06 16
49 H 0.09 2.23 7.06 -2.39 -0.02 2.22 16
50 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16
Total: -1.00 -71.03 402.79 1.00 -70.03
By element:
Atomic # 1 Polarization: 35.16 SS G_CDS: 0.21 Total: 35.37 kcal
Atomic # 6 Polarization: 18.46 SS G_CDS: 7.51 Total: 25.96 kcal
Atomic # 7 Polarization: -106.88 SS G_CDS: -7.72 Total: -114.60 kcal
Atomic # 8 Polarization: -59.53 SS G_CDS: -1.03 Total: -60.55 kcal
Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal
Total: -71.03 1.00 -70.03 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001112676247.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.501 kcal
(2) G-P(sol) polarization free energy of solvation -71.027 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.528 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.996 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.032 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.533 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds