Wall clock time and date at job start Tue Mar 31 2020 22:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 120.00247 * 2 1 4 4 C 1.53006 * 109.46866 * 124.99980 * 3 2 1 5 5 O 1.42906 * 109.46748 * 179.97438 * 4 3 2 6 6 C 1.42898 * 113.99821 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.46985 * 30.00310 * 6 5 4 8 8 C 1.52999 * 109.47444 * 270.00482 * 6 5 4 9 9 C 1.50693 * 109.47065 * 150.00297 * 6 5 4 10 10 O 1.21283 * 120.00266 * 5.00204 * 9 6 5 11 11 N 1.34781 * 120.00328 * 185.00305 * 9 6 5 12 12 C 1.47087 * 120.87397 * 359.71887 * 11 9 6 13 13 C 1.53700 * 108.27329 * 128.76139 * 12 11 9 14 14 N 1.46892 * 109.25979 * 54.07559 * 13 12 11 15 15 C 1.46901 * 111.00342 * 172.60740 * 14 13 12 16 16 C 1.50694 * 109.47299 * 294.30910 * 15 14 13 17 17 O 1.21301 * 120.00078 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00217 * 179.97438 * 16 15 14 19 19 C 1.37098 * 120.00101 * 179.97438 * 18 16 15 20 20 H 1.07999 * 120.00193 * 0.02562 * 19 18 16 21 21 C 1.38947 * 120.00125 * 180.02562 * 19 18 16 22 22 N 1.31416 * 120.00084 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00263 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47151 * 59.99869 * 23 21 19 25 25 H 1.48497 * 109.47264 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47132 * 300.00019 * 23 21 19 27 27 C 1.46906 * 111.27327 * 296.75974 * 14 13 12 28 28 C 1.47075 * 120.88311 * 180.02562 * 11 9 6 29 29 H 1.07998 * 119.99939 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99621 * 0.02562 * 1 2 3 31 31 H 1.08001 * 119.99621 * 179.97438 * 2 1 3 32 32 H 1.08993 * 109.47512 * 5.00103 * 3 2 1 33 33 H 1.09000 * 109.47247 * 244.99812 * 3 2 1 34 34 H 1.09000 * 109.47050 * 299.99952 * 4 3 2 35 35 H 1.09001 * 109.46801 * 60.00064 * 4 3 2 36 36 H 1.09003 * 109.46889 * 299.99886 * 8 6 5 37 37 H 1.09004 * 109.47118 * 59.99436 * 8 6 5 38 38 H 1.08995 * 109.47513 * 179.97438 * 8 6 5 39 39 H 1.08996 * 109.62710 * 248.52191 * 12 11 9 40 40 H 1.08993 * 109.63081 * 9.10481 * 12 11 9 41 41 H 1.09005 * 109.64432 * 294.07717 * 13 12 11 42 42 H 1.08996 * 109.42208 * 173.94725 * 13 12 11 43 43 H 1.09007 * 109.46614 * 54.30742 * 15 14 13 44 44 H 1.08998 * 109.47406 * 174.30191 * 15 14 13 45 45 H 0.97000 * 119.99865 * 0.02562 * 18 16 15 46 46 H 0.96994 * 120.00150 * 179.97438 * 22 21 19 47 47 H 1.09000 * 109.49017 * 303.14524 * 27 14 13 48 48 H 1.08996 * 109.51407 * 183.07590 * 27 14 13 49 49 H 1.08989 * 109.63003 * 350.89437 * 28 11 9 50 50 H 1.09006 * 109.62778 * 111.47934 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3329 1.1817 5 8 3.7501 2.5703 1.1813 6 6 4.6888 2.6994 2.2510 7 1 5.0649 1.7138 2.5253 8 6 4.0005 3.3370 3.4595 9 6 5.8368 3.5701 1.8095 10 8 5.8070 4.1081 0.7229 11 7 6.8967 3.7511 2.6221 12 6 6.9503 3.1130 3.9463 13 6 8.2923 2.3743 4.0713 14 7 9.3887 3.3101 3.7885 15 6 10.6925 2.6932 4.0668 16 6 10.8148 2.4219 5.5441 17 8 9.9054 2.7142 6.2918 18 7 11.9345 1.8545 6.0347 19 6 12.0460 1.6082 7.3788 20 1 11.2363 1.8685 8.0444 21 6 13.2006 1.0237 7.8846 22 7 14.1861 0.7075 7.0747 23 14 13.3522 0.6875 9.7158 24 1 12.2679 -0.2335 10.1414 25 1 14.6704 0.0644 9.9972 26 1 13.2390 1.9649 10.4647 27 6 9.3244 3.8044 2.4066 28 6 8.0273 4.5973 2.2111 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5399 0.9354 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3588 2.1316 0.0896 33 1 2.6214 1.4025 -0.9314 34 1 2.4773 1.2355 2.1131 35 1 3.7400 0.5063 1.0921 36 1 3.6243 4.3226 3.1852 37 1 3.1700 2.7072 3.7788 38 1 4.7163 3.4351 4.2755 39 1 6.8741 3.8741 4.7228 40 1 6.1293 2.4028 4.0440 41 1 8.3247 1.5501 3.3587 42 1 8.3986 1.9847 5.0837 43 1 10.7755 1.7555 3.5171 44 1 11.4884 3.3691 3.7544 45 1 12.6619 1.6211 5.4369 46 1 14.9922 0.2998 7.4279 47 1 9.3425 2.9603 1.7172 48 1 10.1793 4.4518 2.2114 49 1 7.9187 4.8687 1.1612 50 1 8.0525 5.4980 2.8245 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112676247.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:58 Heat of formation + Delta-G solvation = -101.532877 kcal Electronic energy + Delta-G solvation = -29615.339285 eV Core-core repulsion = 25449.859797 eV Total energy + Delta-G solvation = -4165.479487 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.58763 -40.35797 -39.22159 -38.39463 -36.11054 -36.01329 -35.49960 -33.25115 -33.12785 -31.68562 -30.19480 -29.83043 -27.49663 -26.00081 -24.95654 -24.70503 -23.82778 -22.12933 -21.04909 -20.76420 -20.14157 -19.82594 -18.50523 -17.88683 -17.72917 -17.15891 -16.72054 -16.58075 -16.39442 -16.29122 -16.03828 -15.86065 -15.42186 -15.40115 -15.31174 -15.20075 -14.47927 -14.41116 -14.13215 -13.83887 -13.58594 -13.51161 -13.35573 -13.25094 -13.11891 -12.87530 -12.77751 -12.41076 -12.36560 -12.32594 -12.21982 -12.14222 -12.11014 -12.02366 -11.98158 -11.40871 -10.99809 -10.51712 -10.32191 -10.27409 -9.97724 -9.80703 -9.22550 -8.43380 -5.91576 1.31881 1.41796 1.44121 1.45309 1.54367 1.66443 2.08745 2.29975 2.65992 2.77674 3.23885 3.35054 3.38319 3.77701 3.86476 3.90974 3.96590 4.03752 4.12598 4.14318 4.19592 4.23501 4.26668 4.41194 4.43271 4.44418 4.46771 4.51347 4.60257 4.63148 4.70788 4.75730 4.81407 4.87904 4.92224 5.01983 5.02961 5.09827 5.16914 5.35800 5.44213 5.72690 5.81034 5.84239 6.03606 6.07072 6.13594 6.31852 6.63627 7.02985 7.16221 7.60393 8.15184 8.73645 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016828 B = 0.001978 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.445014 B =14155.083210 C =15068.293534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.163 4.163 3 C -0.091 4.091 4 C 0.060 3.940 5 O -0.386 6.386 6 C 0.073 3.927 7 H 0.107 0.893 8 C -0.173 4.173 9 C 0.513 3.487 10 O -0.571 6.571 11 N -0.606 5.606 12 C 0.117 3.883 13 C 0.039 3.961 14 N -0.530 5.530 15 C 0.058 3.942 16 C 0.444 3.556 17 O -0.609 6.609 18 N -0.575 5.575 19 C -0.330 4.330 20 H 0.082 0.918 21 C -0.014 4.014 22 N -0.922 5.922 23 Si 0.991 3.009 24 H -0.271 1.271 25 H -0.274 1.274 26 H -0.273 1.273 27 C 0.047 3.953 28 C 0.119 3.881 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.120 0.880 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.115 0.885 41 H 0.035 0.965 42 H 0.086 0.914 43 H 0.065 0.935 44 H 0.111 0.889 45 H 0.395 0.605 46 H 0.276 0.724 47 H 0.038 0.962 48 H 0.106 0.894 49 H 0.092 0.908 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.745 -0.555 -11.894 23.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.181 4.181 3 C -0.128 4.128 4 C -0.016 4.016 5 O -0.305 6.305 6 C 0.012 3.988 7 H 0.125 0.875 8 C -0.230 4.230 9 C 0.302 3.698 10 O -0.449 6.449 11 N -0.341 5.341 12 C -0.005 4.005 13 C -0.090 4.090 14 N -0.255 5.255 15 C -0.073 4.073 16 C 0.231 3.769 17 O -0.495 6.495 18 N -0.212 5.212 19 C -0.459 4.459 20 H 0.100 0.900 21 C -0.213 4.213 22 N -0.563 5.563 23 Si 0.815 3.185 24 H -0.196 1.196 25 H -0.199 1.199 26 H -0.198 1.198 27 C -0.081 4.081 28 C -0.003 4.003 29 H 0.130 0.870 30 H 0.117 0.883 31 H 0.138 0.862 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.133 0.867 41 H 0.053 0.947 42 H 0.105 0.895 43 H 0.083 0.917 44 H 0.129 0.871 45 H 0.228 0.772 46 H 0.085 0.915 47 H 0.056 0.944 48 H 0.124 0.876 49 H 0.110 0.890 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -20.269 0.379 -11.774 23.444 hybrid contribution 1.070 -1.109 0.169 1.550 sum -19.199 -0.729 -11.605 22.446 Atomic orbital electron populations 1.24083 0.95771 1.02822 0.99471 1.22816 0.96263 0.97652 1.01343 1.20614 0.97689 0.96591 0.97942 1.22730 0.94309 0.85131 0.99466 1.87989 1.54185 1.38992 1.49311 1.21948 0.88503 0.99591 0.88753 0.87499 1.22395 1.02565 1.02157 0.95920 1.20930 0.83452 0.81604 0.83841 1.90668 1.80108 1.50860 1.23301 1.48239 1.18847 1.49156 1.17826 1.22205 0.97369 0.97768 0.83190 1.22666 0.90781 0.93219 1.02304 1.61478 1.01628 1.38807 1.23607 1.21721 0.93156 1.00007 0.92398 1.20661 0.83141 0.82020 0.91083 1.90454 1.40763 1.57175 1.61111 1.41939 1.16415 1.54521 1.08343 1.19627 1.02654 1.39052 0.84581 0.89992 1.26011 0.94591 0.96459 1.04285 1.69669 1.06816 1.42669 1.37126 0.85011 0.77646 0.78582 0.77252 1.19582 1.19886 1.19803 1.22540 0.98875 0.99203 0.87487 1.21726 0.83581 0.93330 1.01680 0.86967 0.88275 0.86241 0.90981 0.91085 0.91334 0.92244 0.92253 0.89063 0.89178 0.89943 0.86720 0.94663 0.89543 0.91734 0.87069 0.77152 0.91451 0.94374 0.87608 0.89001 0.90142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 14.32 67.78 0.97 -0.95 16 2 C -0.16 -1.93 9.52 25.64 0.24 -1.69 16 3 C -0.09 -1.37 6.03 29.85 0.18 -1.19 16 4 C 0.06 0.94 5.73 71.98 0.41 1.35 16 5 O -0.39 -8.89 9.53 -129.99 -1.24 -10.13 16 6 C 0.07 1.45 2.30 29.85 0.07 1.51 16 7 H 0.11 1.62 7.06 -2.39 -0.02 1.60 16 8 C -0.17 -2.65 9.11 71.98 0.66 -1.99 16 9 C 0.51 13.55 7.13 87.65 0.62 14.17 16 10 O -0.57 -19.79 15.96 15.95 0.25 -19.53 16 11 N -0.61 -14.44 3.00 -816.97 -2.45 -16.89 16 12 C 0.12 2.56 5.10 86.50 0.44 3.01 16 13 C 0.04 1.08 5.27 86.54 0.46 1.54 16 14 N -0.53 -15.60 4.37 -898.79 -3.93 -19.52 16 15 C 0.06 1.87 5.45 85.55 0.47 2.33 16 16 C 0.44 19.70 7.44 87.66 0.65 20.35 16 17 O -0.61 -30.85 13.91 -3.09 -0.04 -30.89 16 18 N -0.57 -28.15 5.29 -306.99 -1.62 -29.77 16 19 C -0.33 -17.98 9.68 84.04 0.81 -17.16 16 20 H 0.08 4.73 7.16 -2.91 -0.02 4.70 16 21 C -0.01 -0.72 5.50 84.92 0.47 -0.25 16 22 N -0.92 -48.69 13.05 21.66 0.28 -48.41 16 23 Si 0.99 41.76 29.55 68.60 2.03 43.79 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 27 C 0.05 1.09 5.62 86.40 0.49 1.58 16 28 C 0.12 2.80 6.60 86.36 0.57 3.37 16 29 H 0.11 0.87 8.06 -2.91 -0.02 0.84 16 30 H 0.10 0.98 7.84 -2.91 -0.02 0.96 16 31 H 0.12 1.18 8.06 -2.91 -0.02 1.16 16 32 H 0.07 1.12 7.79 -2.39 -0.02 1.10 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.07 0.85 7.87 -2.39 -0.02 0.83 16 35 H 0.06 0.83 8.09 -2.39 -0.02 0.81 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 1.03 7.87 -2.39 -0.02 1.01 16 38 H 0.09 1.22 5.43 -2.39 -0.01 1.21 16 39 H 0.08 1.91 8.13 -2.39 -0.02 1.89 16 40 H 0.11 1.83 4.83 -2.39 -0.01 1.82 16 41 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 42 H 0.09 3.00 5.77 -2.39 -0.01 2.99 16 43 H 0.06 1.88 8.13 -2.38 -0.02 1.86 16 44 H 0.11 3.13 7.97 -2.39 -0.02 3.11 16 45 H 0.39 18.54 7.90 -92.71 -0.73 17.81 16 46 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 47 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.11 2.08 7.99 -2.39 -0.02 2.06 16 49 H 0.09 2.23 7.06 -2.39 -0.02 2.22 16 50 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -71.03 402.79 1.00 -70.03 By element: Atomic # 1 Polarization: 35.16 SS G_CDS: 0.21 Total: 35.37 kcal Atomic # 6 Polarization: 18.46 SS G_CDS: 7.51 Total: 25.96 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -7.72 Total: -114.60 kcal Atomic # 8 Polarization: -59.53 SS G_CDS: -1.03 Total: -60.55 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -71.03 1.00 -70.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112676247.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.501 kcal (2) G-P(sol) polarization free energy of solvation -71.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds