Wall clock time and date at job start Tue Mar 31 2020 23:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46688 * 2 1 4 4 C 1.46494 * 119.99657 * 265.08214 * 3 2 1 5 5 C 1.53006 * 109.47436 * 270.00171 * 4 3 2 6 6 C 1.50693 * 109.47565 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99749 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00537 * 180.02562 * 6 5 4 9 9 C 1.46493 * 120.00284 * 180.02562 * 8 6 5 10 10 C 1.34776 * 120.00299 * 85.08920 * 3 2 1 11 11 O 1.21349 * 119.99543 * 5.04773 * 10 3 2 12 12 C 1.49441 * 120.00124 * 185.05143 * 10 3 2 13 13 O 1.21354 * 119.99984 * 274.62434 * 12 10 3 14 14 N 1.34779 * 120.00383 * 94.62817 * 12 10 3 15 15 C 1.46918 * 120.63455 * 174.95511 * 14 12 10 16 16 C 1.53194 * 108.89598 * 233.56023 * 15 14 12 17 17 C 1.53075 * 109.29010 * 305.57877 * 16 15 14 18 18 C 1.50704 * 109.43876 * 181.23297 * 17 16 15 19 19 H 1.07998 * 120.00242 * 239.79094 * 18 17 16 20 20 C 1.37885 * 119.99971 * 59.79954 * 18 17 16 21 21 N 1.31518 * 119.99497 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99946 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46732 * 59.99725 * 22 20 18 24 24 H 1.48496 * 109.46732 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47027 * 299.99527 * 22 20 18 26 26 C 1.53036 * 109.66124 * 61.15412 * 17 16 15 27 27 C 1.46933 * 120.62681 * 354.97537 * 14 12 10 28 28 H 1.09006 * 109.47067 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47484 * 299.99827 * 1 2 3 30 30 H 1.08991 * 109.47266 * 60.00642 * 1 2 3 31 31 H 1.08995 * 109.47045 * 239.99653 * 2 1 3 32 32 H 1.09000 * 109.47147 * 119.99954 * 2 1 3 33 33 H 1.09000 * 109.47545 * 30.00106 * 4 3 2 34 34 H 1.09008 * 109.47195 * 150.00513 * 4 3 2 35 35 H 1.09000 * 109.46700 * 300.00453 * 5 4 3 36 36 H 1.08995 * 109.46759 * 60.00198 * 5 4 3 37 37 H 0.97001 * 119.99371 * 0.02562 * 8 6 5 38 38 H 1.08995 * 109.47365 * 60.00061 * 9 8 6 39 39 H 1.09003 * 109.46927 * 179.97438 * 9 8 6 40 40 H 1.09006 * 109.47052 * 299.99931 * 9 8 6 41 41 H 1.09001 * 109.58989 * 353.41504 * 15 14 12 42 42 H 1.09002 * 109.58938 * 113.70053 * 15 14 12 43 43 H 1.09000 * 109.49617 * 65.38393 * 16 15 14 44 44 H 1.08991 * 109.50193 * 185.48429 * 16 15 14 45 45 H 1.08998 * 109.34808 * 301.12559 * 17 16 15 46 46 H 0.97002 * 119.99189 * 180.02562 * 21 20 18 47 47 H 1.09007 * 109.49923 * 178.74933 * 26 17 16 48 48 H 1.08994 * 109.52741 * 58.66222 * 26 17 16 49 49 H 1.08992 * 109.58795 * 246.15862 * 27 14 12 50 50 H 1.09003 * 109.58345 * 6.44401 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3649 2.0355 -1.2641 5 6 3.8406 1.7843 -1.5806 6 6 4.1974 2.4579 -2.8805 7 8 3.3544 3.0782 -3.4933 8 7 5.4531 2.3710 -3.3622 9 6 5.8000 3.0263 -4.6257 10 6 2.1487 2.0500 1.1629 11 8 1.9498 1.4804 2.2158 12 6 2.5380 3.4927 1.1556 13 8 3.7099 3.8048 1.1113 14 7 1.5876 4.4475 1.1982 15 6 1.9557 5.8660 1.3029 16 6 1.2198 6.4827 2.4966 17 6 -0.2827 6.2292 2.3502 18 6 -1.0130 6.8608 3.5074 19 1 -1.6094 6.2492 4.1681 20 6 -0.9199 8.2196 3.7224 21 7 -0.1933 8.9643 2.9179 22 14 -1.8256 9.0025 5.1563 23 1 -1.3486 8.4043 6.4290 24 1 -1.5639 10.4642 5.1682 25 1 -3.2837 8.7614 5.0118 26 6 -0.5520 4.7228 2.3386 27 6 0.1638 4.0894 1.1414 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.7473 1.6291 -2.0650 34 1 2.1892 3.1079 -1.1783 35 1 4.4582 2.1908 -0.7796 36 1 4.0163 0.7121 -1.6664 37 1 6.1272 1.8745 -2.8722 38 1 5.6249 4.0986 -4.5389 39 1 6.8513 2.8472 -4.8511 40 1 5.1820 2.6209 -5.4269 41 1 3.0318 5.9543 1.4519 42 1 1.6695 6.3862 0.3888 43 1 1.5758 6.0249 3.4195 44 1 1.4088 7.5557 2.5257 45 1 -0.6337 6.6681 1.4162 46 1 -0.1275 9.9201 3.0694 47 1 -1.6245 4.5455 2.2566 48 1 -0.1794 4.2789 3.2617 49 1 -0.2708 4.4652 0.2151 50 1 0.0578 3.0053 1.1813 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120337803.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:03 Heat of formation + Delta-G solvation = -110.364604 kcal Electronic energy + Delta-G solvation = -31163.014940 eV Core-core repulsion = 26997.152481 eV Total energy + Delta-G solvation = -4165.862459 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.91472 -39.84490 -38.70784 -36.90811 -36.37940 -34.87051 -33.60963 -32.56241 -31.17258 -30.56648 -30.13947 -27.26347 -26.61862 -25.11340 -24.08535 -23.17791 -22.49088 -21.40381 -20.71876 -19.46403 -18.41512 -17.91515 -17.37150 -16.97676 -16.53487 -16.20463 -15.94084 -15.81464 -15.28468 -14.59051 -14.57285 -14.51608 -14.15083 -13.93804 -13.74989 -13.42961 -13.21857 -12.98823 -12.86071 -12.81289 -12.69016 -12.60359 -12.41311 -12.29093 -12.16794 -11.87045 -11.53697 -11.23916 -11.20951 -11.11951 -10.91465 -10.69157 -10.43937 -10.21381 -10.11436 -9.59460 -9.44585 -9.42347 -9.19871 -9.03857 -8.96408 -8.38874 -8.16726 -6.02169 -4.08517 2.16524 2.26193 2.38542 2.70113 2.98908 3.31335 3.36156 3.38970 3.49203 4.24302 4.41938 4.48654 4.59923 4.68135 4.82415 4.94101 5.05848 5.14197 5.18850 5.20548 5.27557 5.31109 5.37452 5.49639 5.51818 5.64757 5.69467 5.71847 5.83200 5.94236 6.02689 6.06702 6.16455 6.24298 6.34436 6.36253 6.58051 6.70012 6.92943 6.94607 7.12594 7.14327 7.26457 7.62392 7.67776 7.77941 7.90763 7.92699 8.02449 8.14630 8.39596 8.94307 9.56550 11.03437 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013852 B = 0.003013 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.897474 B = 9291.914381 C =10533.804955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.110 3.890 3 N -0.604 5.604 4 C 0.124 3.876 5 C -0.164 4.164 6 C 0.519 3.481 7 O -0.537 6.537 8 N -0.737 5.737 9 C 0.087 3.913 10 C 0.521 3.479 11 O -0.507 6.507 12 C 0.509 3.491 13 O -0.531 6.531 14 N -0.577 5.577 15 C 0.108 3.892 16 C -0.124 4.124 17 C 0.049 3.951 18 C -0.513 4.513 19 H 0.055 0.945 20 C 0.062 3.938 21 N -0.891 5.891 22 Si 0.892 3.108 23 H -0.278 1.278 24 H -0.287 1.287 25 H -0.277 1.277 26 C -0.124 4.124 27 C 0.105 3.895 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.403 0.597 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.040 0.960 44 H 0.108 0.892 45 H 0.029 0.971 46 H 0.261 0.739 47 H 0.064 0.936 48 H 0.056 0.944 49 H 0.072 0.928 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.849 -17.525 -13.997 24.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.012 4.012 3 N -0.339 5.339 4 C 0.000 4.000 5 C -0.205 4.205 6 C 0.305 3.695 7 O -0.413 6.413 8 N -0.389 5.389 9 C -0.057 4.057 10 C 0.304 3.696 11 O -0.380 6.380 12 C 0.291 3.709 13 O -0.409 6.409 14 N -0.310 5.310 15 C -0.013 4.013 16 C -0.162 4.162 17 C 0.031 3.969 18 C -0.551 4.551 19 H 0.073 0.927 20 C -0.139 4.139 21 N -0.530 5.530 22 Si 0.720 3.280 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.162 4.162 27 C -0.018 4.018 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.126 0.874 36 H 0.116 0.884 37 H 0.236 0.764 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.059 0.941 44 H 0.126 0.874 45 H 0.047 0.953 46 H 0.071 0.929 47 H 0.082 0.918 48 H 0.075 0.925 49 H 0.090 0.910 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.780 -16.997 -13.914 23.655 hybrid contribution -0.052 0.223 0.996 1.022 sum 8.728 -16.773 -12.918 22.899 Atomic orbital electron populations 1.22157 0.95293 1.02521 1.02919 1.21524 0.94901 0.81438 1.03361 1.48080 1.65012 1.14693 1.06148 1.21350 0.93775 0.99499 0.85332 1.22133 0.99567 1.02459 0.96363 1.20508 0.82087 0.80302 0.86555 1.90738 1.48466 1.41877 1.60230 1.45799 1.11932 1.55912 1.25287 1.21543 1.00463 0.98323 0.85397 1.20545 0.76623 0.88254 0.84187 1.90791 1.48118 1.68635 1.30455 1.20053 0.86548 0.86089 0.78248 1.90738 1.17424 1.81787 1.50937 1.48317 1.06515 1.07451 1.68693 1.22055 1.00693 0.77492 1.01057 1.22063 0.97430 1.03156 0.93591 1.18645 0.92057 0.88526 0.97699 1.21135 1.29160 0.92536 1.12312 0.92693 1.24963 0.95336 0.97328 0.96314 1.69827 1.39758 1.05828 1.37545 0.86661 0.80249 0.78120 0.82996 1.20320 1.21310 1.20306 1.22015 0.98802 0.99793 0.95553 1.21966 0.79848 0.99011 1.00954 0.91308 0.91825 0.92160 0.90083 0.89689 0.88690 0.89246 0.87409 0.88392 0.76374 0.92042 0.90693 0.92216 0.90339 0.91467 0.94107 0.87441 0.95304 0.92867 0.91763 0.92505 0.90954 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 10.20 37.16 0.38 -1.10 16 2 C 0.11 0.99 6.12 -4.04 -0.02 0.96 16 3 N -0.60 -7.12 2.48 -174.20 -0.43 -7.56 16 4 C 0.12 1.35 4.56 -4.04 -0.02 1.33 16 5 C -0.16 -1.52 6.02 -27.88 -0.17 -1.69 16 6 C 0.52 5.53 7.83 -10.99 -0.09 5.45 16 7 O -0.54 -7.77 15.98 5.55 0.09 -7.69 16 8 N -0.74 -5.61 5.71 -67.08 -0.38 -5.99 16 9 C 0.09 0.58 10.70 59.84 0.64 1.22 16 10 C 0.52 8.38 5.41 -11.59 -0.06 8.32 16 11 O -0.51 -9.48 16.73 5.50 0.09 -9.39 16 12 C 0.51 9.28 5.60 -11.59 -0.06 9.22 16 13 O -0.53 -10.60 16.02 5.49 0.09 -10.51 16 14 N -0.58 -10.65 2.97 -173.28 -0.52 -11.16 16 15 C 0.11 2.14 6.41 -3.71 -0.02 2.11 16 16 C -0.12 -2.87 5.16 -26.59 -0.14 -3.00 16 17 C 0.05 1.17 2.06 -91.71 -0.19 0.98 16 18 C -0.51 -13.73 8.56 -34.44 -0.29 -14.02 16 19 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 20 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 21 N -0.89 -24.70 11.30 55.43 0.63 -24.08 16 22 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C -0.12 -2.48 5.30 -26.61 -0.14 -2.62 16 27 C 0.10 1.78 6.36 -3.71 -0.02 1.76 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.49 8.03 -51.93 -0.42 0.08 16 32 H 0.08 0.85 7.51 -51.93 -0.39 0.46 16 33 H 0.09 0.88 8.03 -51.93 -0.42 0.46 16 34 H 0.09 1.20 6.74 -51.92 -0.35 0.85 16 35 H 0.11 1.16 7.62 -51.93 -0.40 0.76 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.40 1.90 8.83 -40.82 -0.36 1.54 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 1.56 7.04 -51.93 -0.37 1.19 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.11 2.75 6.03 -51.93 -0.31 2.43 16 45 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 47 H 0.06 1.22 8.14 -51.92 -0.42 0.79 16 48 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 49 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 50 H 0.06 1.02 6.31 -51.93 -0.33 0.69 16 LS Contribution 405.70 15.07 6.11 6.11 Total: -1.00 -33.56 405.70 -8.03 -41.59 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -8.37 Total: 2.11 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: -0.31 Total: 10.50 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: -0.70 Total: -48.79 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: 0.27 Total: -27.59 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.56 -8.03 -41.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120337803.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.776 kcal (2) G-P(sol) polarization free energy of solvation -33.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds