Wall clock time and date at job start Tue Mar 31 2020 23:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46688 * 2 1 4 4 C 1.46494 * 119.99657 * 265.08214 * 3 2 1 5 5 C 1.53006 * 109.47436 * 270.00171 * 4 3 2 6 6 C 1.50693 * 109.47565 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99749 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00537 * 180.02562 * 6 5 4 9 9 C 1.46493 * 120.00284 * 180.02562 * 8 6 5 10 10 C 1.34776 * 120.00299 * 85.08920 * 3 2 1 11 11 O 1.21349 * 119.99543 * 5.04773 * 10 3 2 12 12 C 1.49441 * 120.00124 * 185.05143 * 10 3 2 13 13 O 1.21354 * 119.99984 * 274.62434 * 12 10 3 14 14 N 1.34779 * 120.00383 * 94.62817 * 12 10 3 15 15 C 1.46918 * 120.63455 * 174.95511 * 14 12 10 16 16 C 1.53194 * 108.89598 * 233.56023 * 15 14 12 17 17 C 1.53075 * 109.29010 * 305.57877 * 16 15 14 18 18 C 1.50704 * 109.43876 * 181.23297 * 17 16 15 19 19 H 1.07998 * 120.00242 * 239.79094 * 18 17 16 20 20 C 1.37885 * 119.99971 * 59.79954 * 18 17 16 21 21 N 1.31518 * 119.99497 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99946 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46732 * 59.99725 * 22 20 18 24 24 H 1.48496 * 109.46732 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47027 * 299.99527 * 22 20 18 26 26 C 1.53036 * 109.66124 * 61.15412 * 17 16 15 27 27 C 1.46933 * 120.62681 * 354.97537 * 14 12 10 28 28 H 1.09006 * 109.47067 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47484 * 299.99827 * 1 2 3 30 30 H 1.08991 * 109.47266 * 60.00642 * 1 2 3 31 31 H 1.08995 * 109.47045 * 239.99653 * 2 1 3 32 32 H 1.09000 * 109.47147 * 119.99954 * 2 1 3 33 33 H 1.09000 * 109.47545 * 30.00106 * 4 3 2 34 34 H 1.09008 * 109.47195 * 150.00513 * 4 3 2 35 35 H 1.09000 * 109.46700 * 300.00453 * 5 4 3 36 36 H 1.08995 * 109.46759 * 60.00198 * 5 4 3 37 37 H 0.97001 * 119.99371 * 0.02562 * 8 6 5 38 38 H 1.08995 * 109.47365 * 60.00061 * 9 8 6 39 39 H 1.09003 * 109.46927 * 179.97438 * 9 8 6 40 40 H 1.09006 * 109.47052 * 299.99931 * 9 8 6 41 41 H 1.09001 * 109.58989 * 353.41504 * 15 14 12 42 42 H 1.09002 * 109.58938 * 113.70053 * 15 14 12 43 43 H 1.09000 * 109.49617 * 65.38393 * 16 15 14 44 44 H 1.08991 * 109.50193 * 185.48429 * 16 15 14 45 45 H 1.08998 * 109.34808 * 301.12559 * 17 16 15 46 46 H 0.97002 * 119.99189 * 180.02562 * 21 20 18 47 47 H 1.09007 * 109.49923 * 178.74933 * 26 17 16 48 48 H 1.08994 * 109.52741 * 58.66222 * 26 17 16 49 49 H 1.08992 * 109.58795 * 246.15862 * 27 14 12 50 50 H 1.09003 * 109.58345 * 6.44401 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3649 2.0355 -1.2641 5 6 3.8406 1.7843 -1.5806 6 6 4.1974 2.4579 -2.8805 7 8 3.3544 3.0782 -3.4933 8 7 5.4531 2.3710 -3.3622 9 6 5.8000 3.0263 -4.6257 10 6 2.1487 2.0500 1.1629 11 8 1.9498 1.4804 2.2158 12 6 2.5380 3.4927 1.1556 13 8 3.7099 3.8048 1.1113 14 7 1.5876 4.4475 1.1982 15 6 1.9557 5.8660 1.3029 16 6 1.2198 6.4827 2.4966 17 6 -0.2827 6.2292 2.3502 18 6 -1.0130 6.8608 3.5074 19 1 -1.6094 6.2492 4.1681 20 6 -0.9199 8.2196 3.7224 21 7 -0.1933 8.9643 2.9179 22 14 -1.8256 9.0025 5.1563 23 1 -1.3486 8.4043 6.4290 24 1 -1.5639 10.4642 5.1682 25 1 -3.2837 8.7614 5.0118 26 6 -0.5520 4.7228 2.3386 27 6 0.1638 4.0894 1.1414 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.7473 1.6291 -2.0650 34 1 2.1892 3.1079 -1.1783 35 1 4.4582 2.1908 -0.7796 36 1 4.0163 0.7121 -1.6664 37 1 6.1272 1.8745 -2.8722 38 1 5.6249 4.0986 -4.5389 39 1 6.8513 2.8472 -4.8511 40 1 5.1820 2.6209 -5.4269 41 1 3.0318 5.9543 1.4519 42 1 1.6695 6.3862 0.3888 43 1 1.5758 6.0249 3.4195 44 1 1.4088 7.5557 2.5257 45 1 -0.6337 6.6681 1.4162 46 1 -0.1275 9.9201 3.0694 47 1 -1.6245 4.5455 2.2566 48 1 -0.1794 4.2789 3.2617 49 1 -0.2708 4.4652 0.2151 50 1 0.0578 3.0053 1.1813 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120337803.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:02 Heat of formation + Delta-G solvation = -133.639746 kcal Electronic energy + Delta-G solvation = -31164.024226 eV Core-core repulsion = 26997.152481 eV Total energy + Delta-G solvation = -4166.871745 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.19428 -40.73116 -40.05877 -38.52830 -37.44461 -35.61605 -35.46474 -33.34882 -33.01364 -32.08450 -31.16769 -28.40169 -27.91278 -26.51211 -24.87917 -24.73174 -24.01230 -22.75220 -21.53134 -21.00475 -19.70380 -19.14967 -18.50708 -18.30942 -17.98477 -17.60017 -16.89671 -16.63938 -16.57403 -16.28486 -15.95920 -15.76399 -15.12565 -14.97991 -14.88312 -14.72871 -14.65234 -14.38538 -14.30868 -13.95041 -13.89939 -13.60554 -13.53711 -13.25110 -13.09269 -13.03431 -12.87000 -12.81456 -12.69923 -12.53054 -12.21392 -12.17977 -12.00971 -11.92149 -11.47899 -11.14454 -11.08416 -10.91020 -10.68125 -10.41980 -10.13917 -10.02710 -9.79333 -8.09053 -6.22323 0.87804 1.01172 1.39988 1.42180 1.43171 1.50326 1.58441 2.09377 2.40235 2.43573 3.00831 3.17829 3.70768 3.78790 3.86590 3.97408 4.14377 4.17619 4.21111 4.34048 4.40814 4.42963 4.44624 4.47545 4.53213 4.59110 4.61706 4.64762 4.73692 4.80673 4.87259 4.88397 4.95760 5.00978 5.05223 5.14604 5.30684 5.32680 5.40481 5.42388 5.43289 5.62350 5.87994 5.93980 6.04890 6.13521 6.36270 6.50009 6.60369 6.65776 6.87196 7.21758 7.45486 8.94603 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013852 B = 0.003013 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.897474 B = 9291.914381 C =10533.804955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.104 3.896 3 N -0.584 5.584 4 C 0.121 3.879 5 C -0.155 4.155 6 C 0.515 3.485 7 O -0.582 6.582 8 N -0.725 5.725 9 C 0.083 3.917 10 C 0.524 3.476 11 O -0.539 6.539 12 C 0.505 3.495 13 O -0.553 6.553 14 N -0.581 5.581 15 C 0.120 3.880 16 C -0.113 4.113 17 C 0.047 3.953 18 C -0.535 4.535 19 H 0.051 0.949 20 C 0.016 3.984 21 N -0.913 5.913 22 Si 0.950 3.050 23 H -0.277 1.277 24 H -0.284 1.284 25 H -0.270 1.270 26 C -0.115 4.115 27 C 0.113 3.887 28 H 0.091 0.909 29 H 0.036 0.964 30 H 0.067 0.933 31 H 0.123 0.877 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.136 0.864 37 H 0.419 0.581 38 H 0.042 0.958 39 H 0.110 0.890 40 H 0.055 0.945 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.021 0.979 44 H 0.081 0.919 45 H 0.011 0.989 46 H 0.261 0.739 47 H 0.077 0.923 48 H 0.040 0.960 49 H 0.091 0.909 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.993 -19.896 -15.328 26.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.016 4.016 3 N -0.318 5.318 4 C -0.002 4.002 5 C -0.196 4.196 6 C 0.302 3.698 7 O -0.462 6.462 8 N -0.377 5.377 9 C -0.061 4.061 10 C 0.307 3.693 11 O -0.415 6.415 12 C 0.288 3.712 13 O -0.431 6.431 14 N -0.314 5.314 15 C -0.002 4.002 16 C -0.152 4.152 17 C 0.029 3.971 18 C -0.573 4.573 19 H 0.069 0.931 20 C -0.183 4.183 21 N -0.552 5.552 22 Si 0.776 3.224 23 H -0.203 1.203 24 H -0.210 1.210 25 H -0.195 1.195 26 C -0.154 4.154 27 C -0.009 4.009 28 H 0.110 0.890 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.141 0.859 32 H 0.095 0.905 33 H 0.137 0.863 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.154 0.846 37 H 0.255 0.745 38 H 0.061 0.939 39 H 0.128 0.872 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.039 0.961 44 H 0.099 0.901 45 H 0.029 0.971 46 H 0.071 0.929 47 H 0.095 0.905 48 H 0.059 0.941 49 H 0.110 0.890 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.952 -19.416 -15.279 26.279 hybrid contribution -0.047 0.939 1.351 1.646 sum 8.905 -18.477 -13.928 24.793 Atomic orbital electron populations 1.22148 0.94830 1.03752 1.01923 1.21865 0.95255 0.79467 1.05037 1.48113 1.63118 1.15525 1.05028 1.21456 0.95535 0.98073 0.85128 1.22053 0.97900 1.04586 0.95022 1.20755 0.82542 0.79828 0.86706 1.90721 1.49929 1.43925 1.61616 1.45767 1.11382 1.55125 1.25441 1.21664 1.02577 0.97063 0.84795 1.20095 0.77030 0.87119 0.85090 1.90785 1.50237 1.68758 1.31737 1.20566 0.86120 0.87239 0.77271 1.90713 1.18288 1.82482 1.51637 1.48316 1.07292 1.06890 1.68900 1.21755 1.00012 0.78635 0.99801 1.21821 0.97628 1.01561 0.94179 1.18603 0.91890 0.90813 0.95811 1.21511 1.29505 0.93049 1.13189 0.93107 1.25678 0.96128 0.97920 0.98605 1.69951 1.40595 1.05900 1.38802 0.85736 0.79387 0.77239 0.80031 1.20251 1.20954 1.19516 1.21863 1.00003 0.97173 0.96321 1.21964 0.78716 0.99968 1.00264 0.89050 0.94507 0.91385 0.85918 0.90460 0.86321 0.91996 0.88857 0.84588 0.74501 0.93906 0.87195 0.92582 0.90564 0.90634 0.96057 0.90074 0.97079 0.92934 0.90482 0.94076 0.89049 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 10.20 71.98 0.73 -1.70 16 2 C 0.10 1.53 6.12 86.38 0.53 2.06 16 3 N -0.58 -12.49 2.48 -823.40 -2.04 -14.53 16 4 C 0.12 2.37 4.56 86.38 0.39 2.76 16 5 C -0.15 -2.49 6.02 29.85 0.18 -2.31 16 6 C 0.51 10.14 7.83 87.65 0.69 10.83 16 7 O -0.58 -16.46 15.98 -3.04 -0.05 -16.51 16 8 N -0.73 -9.54 5.71 -484.54 -2.77 -12.31 16 9 C 0.08 0.98 10.70 127.77 1.37 2.35 16 10 C 0.52 16.39 5.41 87.27 0.47 16.86 16 11 O -0.54 -19.89 16.73 -3.24 -0.05 -19.94 16 12 C 0.51 18.39 5.60 87.27 0.49 18.88 16 13 O -0.55 -22.20 16.02 -3.26 -0.05 -22.25 16 14 N -0.58 -21.52 2.97 -820.48 -2.44 -23.96 16 15 C 0.12 4.85 6.41 86.36 0.55 5.40 16 16 C -0.11 -5.43 5.16 30.68 0.16 -5.28 16 17 C 0.05 2.31 2.06 -11.50 -0.02 2.28 16 18 C -0.53 -29.15 8.56 25.60 0.22 -28.93 16 19 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 20 C 0.02 0.86 5.30 84.66 0.45 1.31 16 21 N -0.91 -51.76 11.30 21.45 0.24 -51.52 16 22 Si 0.95 43.63 29.54 68.60 2.03 45.66 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 26 C -0.12 -4.65 5.30 30.67 0.16 -4.49 16 27 C 0.11 3.76 6.36 86.36 0.55 4.31 16 28 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.12 0.85 8.03 -2.39 -0.02 0.83 16 32 H 0.08 1.33 7.51 -2.39 -0.02 1.32 16 33 H 0.12 1.82 8.03 -2.39 -0.02 1.80 16 34 H 0.06 1.61 6.74 -2.38 -0.02 1.59 16 35 H 0.09 1.86 7.62 -2.39 -0.02 1.84 16 36 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.42 2.79 8.83 -92.71 -0.82 1.97 16 38 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 41 H 0.08 3.12 7.04 -2.39 -0.02 3.10 16 42 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 43 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.08 4.33 6.03 -2.39 -0.01 4.32 16 45 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 47 H 0.08 2.88 8.14 -2.38 -0.02 2.86 16 48 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 50 H 0.08 2.53 6.31 -2.39 -0.02 2.51 16 Total: -1.00 -75.51 405.70 1.90 -73.61 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.12 Total: 17.41 kcal Atomic # 6 Polarization: 17.43 SS G_CDS: 6.92 Total: 24.35 kcal Atomic # 7 Polarization: -95.31 SS G_CDS: -7.01 Total: -102.32 kcal Atomic # 8 Polarization: -58.55 SS G_CDS: -0.16 Total: -58.71 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -75.51 1.90 -73.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120337803.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.029 kcal (2) G-P(sol) polarization free energy of solvation -75.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds