Wall clock time and date at job start Tue Mar 31 2020 22:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42898 * 113.99775 * 2 1 4 4 H 1.09001 * 109.47073 * 30.00391 * 3 2 1 5 5 C 1.52991 * 109.47199 * 270.00061 * 3 2 1 6 6 C 1.50702 * 109.46944 * 149.99762 * 3 2 1 7 7 O 1.21286 * 120.00167 * 5.00345 * 6 3 2 8 8 N 1.34777 * 120.00057 * 185.00141 * 6 3 2 9 9 C 1.46493 * 120.00298 * 180.02562 * 8 6 3 10 10 C 1.53952 * 113.58373 * 154.99811 * 9 8 6 11 11 C 1.52902 * 86.78150 * 89.87131 * 10 9 8 12 12 C 1.52914 * 121.13790 * 150.61680 * 11 10 9 13 13 C 1.53953 * 86.77966 * 100.82196 * 12 11 10 14 14 N 1.46898 * 113.57514 * 139.33743 * 13 12 11 15 15 C 1.46906 * 110.99888 * 155.00003 * 14 13 12 16 16 C 1.50699 * 109.47140 * 180.02562 * 15 14 13 17 17 O 1.21297 * 119.99980 * 359.97438 * 16 15 14 18 18 N 1.34779 * 120.00037 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99944 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00055 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99682 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00492 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99897 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47298 * 59.99790 * 23 21 19 25 25 H 1.48496 * 109.47325 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47000 * 299.99807 * 23 21 19 27 27 C 1.52906 * 121.14130 * 259.18073 * 11 10 9 28 28 C 1.52913 * 88.04465 * 24.90338 * 11 10 9 29 29 H 1.08998 * 109.46805 * 59.99923 * 1 2 3 30 30 H 1.09005 * 109.46725 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47257 * 299.99992 * 1 2 3 32 32 H 1.09005 * 109.47349 * 299.99623 * 5 3 2 33 33 H 1.09000 * 109.47420 * 60.00250 * 5 3 2 34 34 H 1.09005 * 109.47082 * 180.02562 * 5 3 2 35 35 H 0.97008 * 119.99984 * 359.97438 * 8 6 3 36 36 H 1.09002 * 112.87665 * 23.85954 * 9 8 6 37 37 H 1.09005 * 113.65711 * 335.39938 * 10 9 8 38 38 H 1.08996 * 113.66464 * 204.34488 * 10 9 8 39 39 H 1.09001 * 113.65622 * 346.35266 * 12 11 10 40 40 H 1.08999 * 113.66488 * 215.29478 * 12 11 10 41 41 H 1.08997 * 113.58361 * 270.05176 * 13 12 11 42 42 H 1.00902 * 111.00533 * 31.04410 * 14 13 12 43 43 H 1.09000 * 109.47033 * 300.00113 * 15 14 13 44 44 H 1.09001 * 109.46544 * 60.00058 * 15 14 13 45 45 H 0.96996 * 119.99844 * 359.97438 * 18 16 15 46 46 H 0.97001 * 120.00876 * 179.97438 * 22 21 19 47 47 H 1.08998 * 113.66522 * 144.70410 * 27 11 10 48 48 H 1.09005 * 113.66281 * 13.65303 * 27 11 10 49 49 H 1.08992 * 113.66456 * 89.56972 * 28 11 10 50 50 H 1.08997 * 113.66054 * 220.63434 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2176 1.7714 -1.4424 6 6 3.3386 1.2639 0.7105 7 8 3.7897 0.2045 1.0914 8 7 4.0254 2.4040 0.9225 9 6 5.3170 2.3636 1.6126 10 6 6.2389 3.5463 1.2640 11 6 5.5926 4.2841 2.4371 12 6 6.3647 5.3401 3.2289 13 6 5.5966 6.3919 2.4079 14 7 5.1569 7.5486 3.1995 15 6 4.9834 8.7335 2.3486 16 6 4.5335 9.8973 3.1938 17 8 4.3727 9.7537 4.3874 18 7 4.3089 11.0975 2.6231 19 6 3.9001 12.1564 3.3921 20 1 3.7577 12.0287 4.4550 21 6 3.6690 13.3938 2.8038 22 7 3.8428 13.5493 1.5106 23 14 3.1127 14.8368 3.8516 24 1 4.1365 15.1185 4.8896 25 1 2.9366 16.0343 2.9914 26 1 1.8221 14.5043 4.5066 27 6 4.5005 5.3295 2.2086 28 6 5.2665 2.9203 3.0471 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.8830 1.0775 -1.9563 33 1 1.2568 1.8015 -1.9563 34 1 2.6614 2.7670 -1.4424 35 1 3.6648 3.2514 0.6175 36 1 5.8067 1.3926 1.5388 37 1 6.0261 3.9956 0.2939 38 1 7.2977 3.3337 1.4109 39 1 7.4376 5.3332 3.0367 40 1 6.1233 5.3531 4.2917 41 1 6.1011 6.6783 1.4851 42 1 5.8001 7.7362 3.9539 43 1 5.9311 8.9782 1.8690 44 1 4.2329 8.5263 1.5859 45 1 4.4372 11.2122 1.6686 46 1 3.6812 14.4131 1.0998 47 1 3.7351 5.3395 2.9846 48 1 4.0841 5.3143 1.2013 49 1 6.0521 2.5318 3.6950 50 1 4.2770 2.8697 3.5014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120732155.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:36 Heat of formation + Delta-G solvation = -72.476541 kcal Electronic energy + Delta-G solvation = -29054.428310 eV Core-core repulsion = 24890.208800 eV Total energy + Delta-G solvation = -4164.219510 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.20133 -39.85314 -38.28394 -37.84498 -36.30289 -34.15137 -33.69917 -32.46806 -31.28378 -31.07908 -27.22701 -26.74421 -26.16451 -25.92180 -24.93805 -24.11064 -22.65670 -21.01847 -20.28922 -19.27307 -18.31051 -17.88397 -17.83756 -17.21215 -16.34097 -16.22790 -15.71215 -15.62656 -15.31719 -15.19956 -14.91638 -14.74316 -14.45927 -14.00401 -13.97293 -13.64945 -13.40117 -13.11954 -12.98769 -12.97941 -12.81798 -12.62191 -12.28855 -12.19920 -12.13288 -11.68402 -11.60445 -11.53199 -11.36158 -11.13979 -11.02903 -10.52066 -10.45608 -10.43718 -10.31430 -10.23489 -10.04592 -9.81979 -9.51627 -9.32027 -8.45441 -8.07599 -7.97377 -6.43261 -3.84150 2.27969 2.47310 3.18766 3.24451 3.28915 3.54562 3.89534 4.04193 4.16616 4.18770 4.26564 4.32904 4.43157 4.44213 4.52809 4.60266 4.68971 4.79701 4.86864 4.95451 5.06168 5.17994 5.21538 5.22394 5.26113 5.27857 5.31676 5.43280 5.50330 5.57201 5.61487 5.63394 5.71912 5.74386 5.79770 5.82854 5.89661 5.95665 6.17418 6.20420 6.30814 6.39161 6.58685 7.16902 7.29373 7.53404 7.66648 7.90628 8.04734 8.59821 9.16284 9.52808 10.04419 10.74378 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014942 B = 0.001848 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.500546 B =15147.131778 C =16327.651011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.068 3.932 4 H 0.088 0.912 5 C -0.171 4.171 6 C 0.517 3.483 7 O -0.520 6.520 8 N -0.708 5.708 9 C 0.123 3.877 10 C -0.121 4.121 11 C -0.107 4.107 12 C -0.127 4.127 13 C 0.062 3.938 14 N -0.657 5.657 15 C 0.050 3.950 16 C 0.440 3.560 17 O -0.584 6.584 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 C -0.101 4.101 28 C -0.135 4.135 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.402 0.598 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.350 0.650 43 H 0.042 0.958 44 H 0.084 0.916 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.095 0.905 48 H 0.059 0.941 49 H 0.091 0.909 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.118 -23.092 -7.658 24.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.278 6.278 3 C 0.007 3.993 4 H 0.106 0.894 5 C -0.229 4.229 6 C 0.302 3.698 7 O -0.394 6.394 8 N -0.361 5.361 9 C 0.018 3.982 10 C -0.159 4.159 11 C -0.108 4.108 12 C -0.165 4.165 13 C -0.048 4.048 14 N -0.289 5.289 15 C -0.082 4.082 16 C 0.225 3.775 17 O -0.468 6.468 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.139 4.139 28 C -0.174 4.174 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.237 0.763 36 H 0.120 0.880 37 H 0.093 0.907 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.088 0.912 42 H 0.171 0.829 43 H 0.060 0.940 44 H 0.102 0.898 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.113 0.887 48 H 0.078 0.922 49 H 0.110 0.890 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.250 -24.127 -6.720 25.047 hybrid contribution 0.271 1.897 -0.537 1.990 sum 0.020 -22.230 -7.257 23.385 Atomic orbital electron populations 1.22906 0.80407 1.03351 1.00217 1.88046 1.19824 1.25031 1.94947 1.21940 0.93468 0.87076 0.96842 0.89377 1.22235 1.03638 1.02054 0.94926 1.20398 0.86149 0.84043 0.79196 1.90724 1.68960 1.29785 1.49906 1.45623 1.21350 1.09390 1.59771 1.21845 0.83785 0.99691 0.92921 1.23071 0.99408 0.95301 0.98159 1.22369 0.98479 0.92879 0.97027 1.23050 0.98631 0.94875 0.99962 1.22985 0.95646 0.89924 0.96266 1.60223 1.53614 1.03444 1.11644 1.21726 1.00127 0.90615 0.95770 1.19849 0.84880 0.83962 0.88764 1.90523 1.57042 1.83735 1.15492 1.41865 1.59252 1.08149 1.10797 1.19655 1.41738 0.87592 0.93955 0.87986 1.25262 0.97629 0.98999 0.96072 1.69599 1.49326 1.25732 1.09716 0.85914 0.79362 0.79764 0.79157 1.19920 1.20983 1.19881 1.22833 0.96349 0.93192 1.01517 1.23235 1.02659 0.95300 0.96187 0.93708 0.89066 0.93663 0.91015 0.91019 0.90812 0.76298 0.88033 0.90681 0.88416 0.91490 0.88989 0.91248 0.82928 0.93969 0.89760 0.77483 0.91824 0.88691 0.92189 0.89008 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.27 16 2 O -0.36 -3.65 9.89 -55.09 -0.54 -4.19 16 3 C 0.07 0.54 3.13 -27.89 -0.09 0.46 16 4 H 0.09 0.52 7.79 -51.93 -0.40 0.11 16 5 C -0.17 -0.99 9.48 37.15 0.35 -0.64 16 6 C 0.52 5.37 7.18 -10.98 -0.08 5.29 16 7 O -0.52 -7.71 16.11 -14.31 -0.23 -7.94 16 8 N -0.71 -5.61 5.22 -52.85 -0.28 -5.89 16 9 C 0.12 1.01 4.31 -66.95 -0.29 0.72 16 10 C -0.12 -0.84 7.59 -26.29 -0.20 -1.04 16 11 C -0.11 -0.88 1.02 -154.71 -0.16 -1.04 16 12 C -0.13 -1.21 7.41 -26.28 -0.19 -1.41 16 13 C 0.06 0.70 4.14 -66.73 -0.28 0.43 16 14 N -0.66 -10.15 6.18 -106.95 -0.66 -10.81 16 15 C 0.05 0.86 6.01 -4.97 -0.03 0.83 16 16 C 0.44 10.27 7.82 -10.99 -0.09 10.19 16 17 O -0.58 -15.76 15.78 5.54 0.09 -15.67 16 18 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 19 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 20 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.34 13.05 55.50 0.72 -23.62 16 23 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 C -0.10 -0.98 7.18 -26.29 -0.19 -1.17 16 28 C -0.14 -1.14 7.64 -26.28 -0.20 -1.34 16 29 H 0.04 0.21 7.87 -51.93 -0.41 -0.20 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.25 8.08 -51.93 -0.42 -0.17 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.34 7.87 -51.93 -0.41 -0.07 16 34 H 0.07 0.31 7.92 -51.93 -0.41 -0.10 16 35 H 0.40 2.40 7.35 -40.82 -0.30 2.10 16 36 H 0.10 0.97 7.47 -51.93 -0.39 0.58 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 0.75 7.86 -51.93 -0.41 0.34 16 42 H 0.35 5.67 8.24 -39.29 -0.32 5.34 16 43 H 0.04 0.66 8.13 -51.93 -0.42 0.23 16 44 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 45 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 46 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 47 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.06 0.50 7.47 -51.93 -0.39 0.11 16 49 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 412.14 15.07 6.21 6.21 Total: -1.00 -34.47 412.14 -8.70 -43.17 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -8.34 Total: 12.51 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -0.58 Total: 4.56 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -0.27 Total: -54.54 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.69 Total: -27.80 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.47 -8.70 -43.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120732155.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.308 kcal (2) G-P(sol) polarization free energy of solvation -34.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds