Wall clock time and date at job start Tue Mar 31 2020 22:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42898 * 113.99775 * 2 1 4 4 H 1.09001 * 109.47073 * 30.00391 * 3 2 1 5 5 C 1.52991 * 109.47199 * 270.00061 * 3 2 1 6 6 C 1.50702 * 109.46944 * 149.99762 * 3 2 1 7 7 O 1.21286 * 120.00167 * 5.00345 * 6 3 2 8 8 N 1.34777 * 120.00057 * 185.00141 * 6 3 2 9 9 C 1.46493 * 120.00298 * 180.02562 * 8 6 3 10 10 C 1.53952 * 113.58373 * 154.99811 * 9 8 6 11 11 C 1.52902 * 86.78150 * 89.87131 * 10 9 8 12 12 C 1.52914 * 121.13790 * 150.61680 * 11 10 9 13 13 C 1.53953 * 86.77966 * 100.82196 * 12 11 10 14 14 N 1.46898 * 113.57514 * 139.33743 * 13 12 11 15 15 C 1.46906 * 110.99888 * 155.00003 * 14 13 12 16 16 C 1.50699 * 109.47140 * 180.02562 * 15 14 13 17 17 O 1.21297 * 119.99980 * 359.97438 * 16 15 14 18 18 N 1.34779 * 120.00037 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99944 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00055 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99682 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00492 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99897 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47298 * 59.99790 * 23 21 19 25 25 H 1.48496 * 109.47325 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47000 * 299.99807 * 23 21 19 27 27 C 1.52906 * 121.14130 * 259.18073 * 11 10 9 28 28 C 1.52913 * 88.04465 * 24.90338 * 11 10 9 29 29 H 1.08998 * 109.46805 * 59.99923 * 1 2 3 30 30 H 1.09005 * 109.46725 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47257 * 299.99992 * 1 2 3 32 32 H 1.09005 * 109.47349 * 299.99623 * 5 3 2 33 33 H 1.09000 * 109.47420 * 60.00250 * 5 3 2 34 34 H 1.09005 * 109.47082 * 180.02562 * 5 3 2 35 35 H 0.97008 * 119.99984 * 359.97438 * 8 6 3 36 36 H 1.09002 * 112.87665 * 23.85954 * 9 8 6 37 37 H 1.09005 * 113.65711 * 335.39938 * 10 9 8 38 38 H 1.08996 * 113.66464 * 204.34488 * 10 9 8 39 39 H 1.09001 * 113.65622 * 346.35266 * 12 11 10 40 40 H 1.08999 * 113.66488 * 215.29478 * 12 11 10 41 41 H 1.08997 * 113.58361 * 270.05176 * 13 12 11 42 42 H 1.00902 * 111.00533 * 31.04410 * 14 13 12 43 43 H 1.09000 * 109.47033 * 300.00113 * 15 14 13 44 44 H 1.09001 * 109.46544 * 60.00058 * 15 14 13 45 45 H 0.96996 * 119.99844 * 359.97438 * 18 16 15 46 46 H 0.97001 * 120.00876 * 179.97438 * 22 21 19 47 47 H 1.08998 * 113.66522 * 144.70410 * 27 11 10 48 48 H 1.09005 * 113.66281 * 13.65303 * 27 11 10 49 49 H 1.08992 * 113.66456 * 89.56972 * 28 11 10 50 50 H 1.08997 * 113.66054 * 220.63434 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2176 1.7714 -1.4424 6 6 3.3386 1.2639 0.7105 7 8 3.7897 0.2045 1.0914 8 7 4.0254 2.4040 0.9225 9 6 5.3170 2.3636 1.6126 10 6 6.2389 3.5463 1.2640 11 6 5.5926 4.2841 2.4371 12 6 6.3647 5.3401 3.2289 13 6 5.5966 6.3919 2.4079 14 7 5.1569 7.5486 3.1995 15 6 4.9834 8.7335 2.3486 16 6 4.5335 9.8973 3.1938 17 8 4.3727 9.7537 4.3874 18 7 4.3089 11.0975 2.6231 19 6 3.9001 12.1564 3.3921 20 1 3.7577 12.0287 4.4550 21 6 3.6690 13.3938 2.8038 22 7 3.8428 13.5493 1.5106 23 14 3.1127 14.8368 3.8516 24 1 4.1365 15.1185 4.8896 25 1 2.9366 16.0343 2.9914 26 1 1.8221 14.5043 4.5066 27 6 4.5005 5.3295 2.2086 28 6 5.2665 2.9203 3.0471 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.8830 1.0775 -1.9563 33 1 1.2568 1.8015 -1.9563 34 1 2.6614 2.7670 -1.4424 35 1 3.6648 3.2514 0.6175 36 1 5.8067 1.3926 1.5388 37 1 6.0261 3.9956 0.2939 38 1 7.2977 3.3337 1.4109 39 1 7.4376 5.3332 3.0367 40 1 6.1233 5.3531 4.2917 41 1 6.1011 6.6783 1.4851 42 1 5.8001 7.7362 3.9539 43 1 5.9311 8.9782 1.8690 44 1 4.2329 8.5263 1.5859 45 1 4.4372 11.2122 1.6686 46 1 3.6812 14.4131 1.0998 47 1 3.7351 5.3395 2.9846 48 1 4.0841 5.3143 1.2013 49 1 6.0521 2.5318 3.6950 50 1 4.2770 2.8697 3.5014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120732155.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:35 Heat of formation + Delta-G solvation = -98.282806 kcal Electronic energy + Delta-G solvation = -29055.547354 eV Core-core repulsion = 24890.208800 eV Total energy + Delta-G solvation = -4165.338553 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.93767 -40.63747 -40.04055 -38.57931 -37.27962 -35.97443 -34.79264 -33.46320 -33.14357 -31.80445 -28.30217 -27.70929 -26.82095 -26.69623 -26.06369 -25.34206 -23.49275 -21.76134 -21.19649 -20.99360 -19.90785 -19.01446 -18.51303 -17.83807 -17.77189 -17.04236 -16.82514 -16.58104 -16.34618 -16.25242 -16.11646 -15.72564 -15.62331 -15.47906 -15.19256 -14.52002 -14.30385 -14.16778 -13.85910 -13.74079 -13.57890 -13.53857 -13.33636 -13.25725 -13.04799 -12.96425 -12.80685 -12.75317 -12.43017 -12.21706 -12.12697 -12.12092 -11.92202 -11.49940 -11.24094 -11.13426 -11.00999 -10.84129 -10.52946 -10.29772 -10.04702 -10.01080 -9.26331 -8.46141 -5.94840 1.40095 1.42131 1.51197 1.52849 1.84276 2.06466 2.29740 2.97519 3.00256 3.21211 3.44437 3.49934 3.60870 3.63883 3.69532 3.83428 3.91671 3.96379 4.00273 4.06726 4.32582 4.44886 4.45021 4.51827 4.53363 4.59237 4.63574 4.67059 4.78996 4.83659 4.85291 4.87069 4.91843 4.92973 4.99238 5.03735 5.11081 5.17105 5.19001 5.37448 5.41314 5.49111 5.66099 5.95571 6.04974 6.22932 6.45735 6.52236 6.61252 7.13248 7.19060 7.57305 8.12892 8.70882 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014942 B = 0.001848 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.500546 B =15147.131778 C =16327.651011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.397 6.397 3 C 0.066 3.934 4 H 0.111 0.889 5 C -0.165 4.165 6 C 0.512 3.488 7 O -0.574 6.574 8 N -0.694 5.694 9 C 0.118 3.882 10 C -0.106 4.106 11 C -0.095 4.095 12 C -0.124 4.124 13 C 0.057 3.943 14 N -0.672 5.672 15 C 0.066 3.934 16 C 0.436 3.564 17 O -0.625 6.625 18 N -0.573 5.573 19 C -0.335 4.335 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.919 5.919 23 Si 0.992 3.008 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.273 1.273 27 C -0.100 4.100 28 C -0.136 4.136 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.414 0.586 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.343 0.657 43 H 0.066 0.934 44 H 0.103 0.897 45 H 0.397 0.603 46 H 0.278 0.722 47 H 0.074 0.926 48 H 0.080 0.920 49 H 0.097 0.903 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.163 -22.580 -9.237 24.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.315 6.315 3 C 0.005 3.995 4 H 0.129 0.871 5 C -0.223 4.223 6 C 0.299 3.701 7 O -0.452 6.452 8 N -0.347 5.347 9 C 0.013 3.987 10 C -0.143 4.143 11 C -0.095 4.095 12 C -0.162 4.162 13 C -0.053 4.053 14 N -0.305 5.305 15 C -0.066 4.066 16 C 0.224 3.776 17 O -0.512 6.512 18 N -0.211 5.211 19 C -0.464 4.464 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.560 5.560 23 Si 0.816 3.184 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.198 1.198 27 C -0.138 4.138 28 C -0.175 4.175 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.251 0.749 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.130 0.870 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.162 0.838 43 H 0.083 0.917 44 H 0.121 0.879 45 H 0.231 0.769 46 H 0.087 0.913 47 H 0.093 0.907 48 H 0.098 0.902 49 H 0.116 0.884 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.206 -23.593 -8.340 25.025 hybrid contribution 0.253 1.686 -0.008 1.705 sum 0.046 -21.907 -8.348 23.444 Atomic orbital electron populations 1.23083 0.78726 1.04162 1.01405 1.88000 1.21824 1.26516 1.95201 1.22106 0.92327 0.86937 0.98087 0.87133 1.22228 1.04308 1.02512 0.93245 1.20971 0.86914 0.83678 0.78540 1.90694 1.70413 1.31726 1.52358 1.45545 1.21004 1.09380 1.58783 1.21860 0.84198 0.99687 0.92995 1.23045 0.99702 0.93562 0.98040 1.22241 0.97676 0.92153 0.97455 1.23015 0.99475 0.94505 0.99176 1.23183 0.96854 0.88601 0.96630 1.60257 1.54361 1.03781 1.12055 1.21586 1.01457 0.88640 0.94921 1.20982 0.82976 0.84796 0.88873 1.90491 1.58377 1.84565 1.17759 1.41936 1.59819 1.08459 1.10837 1.19620 1.44033 0.89350 0.93438 0.90429 1.26026 0.97069 1.00855 0.97322 1.69655 1.49159 1.26594 1.10609 0.85002 0.78737 0.76902 0.77781 1.19755 1.19452 1.19777 1.22792 0.95967 0.93040 1.02029 1.23254 1.02155 0.95657 0.96418 0.91859 0.88624 0.93033 0.92497 0.89548 0.88870 0.74864 0.89523 0.89312 0.87028 0.90082 0.90325 0.89681 0.83798 0.91654 0.87868 0.76935 0.91280 0.90702 0.90157 0.88433 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.82 113.37 1.23 1.48 16 2 O -0.40 -7.89 9.89 -129.99 -1.29 -9.18 16 3 C 0.07 0.98 3.13 29.85 0.09 1.07 16 4 H 0.11 1.08 7.79 -2.39 -0.02 1.06 16 5 C -0.17 -1.60 9.48 71.98 0.68 -0.91 16 6 C 0.51 10.43 7.18 87.66 0.63 11.06 16 7 O -0.57 -17.55 16.11 15.94 0.26 -17.30 16 8 N -0.69 -10.01 5.22 -439.51 -2.29 -12.30 16 9 C 0.12 1.79 4.31 45.63 0.20 1.99 16 10 C -0.11 -1.15 7.59 30.88 0.23 -0.92 16 11 C -0.09 -1.35 1.02 -52.31 -0.05 -1.41 16 12 C -0.12 -2.12 7.41 30.89 0.23 -1.89 16 13 C 0.06 1.14 4.14 45.55 0.19 1.33 16 14 N -0.67 -19.94 6.18 -492.28 -3.04 -22.98 16 15 C 0.07 2.16 6.01 85.56 0.51 2.68 16 16 C 0.44 20.40 7.82 87.66 0.69 21.09 16 17 O -0.63 -34.47 15.78 -3.08 -0.05 -34.51 16 18 N -0.57 -29.00 5.29 -306.98 -1.62 -30.62 16 19 C -0.33 -18.88 9.68 84.04 0.81 -18.07 16 20 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 21 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 22 N -0.92 -48.92 13.05 21.66 0.28 -48.64 16 23 Si 0.99 42.51 29.55 68.60 2.03 44.53 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 27 C -0.10 -1.73 7.18 30.88 0.22 -1.51 16 28 C -0.14 -2.16 7.64 30.89 0.24 -1.93 16 29 H 0.06 0.46 7.87 -2.39 -0.02 0.44 16 30 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.05 0.50 8.08 -2.39 -0.02 0.48 16 32 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.09 0.59 7.87 -2.39 -0.02 0.57 16 34 H 0.09 0.51 7.92 -2.38 -0.02 0.49 16 35 H 0.41 3.88 7.35 -92.70 -0.68 3.20 16 36 H 0.09 1.64 7.47 -2.39 -0.02 1.62 16 37 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.09 1.50 7.86 -2.39 -0.02 1.49 16 42 H 0.34 10.95 8.24 -89.69 -0.74 10.21 16 43 H 0.07 1.85 8.13 -2.39 -0.02 1.83 16 44 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 45 H 0.40 18.92 7.90 -92.71 -0.73 18.19 16 46 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 47 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.08 1.05 7.47 -2.38 -0.02 1.04 16 49 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -76.88 412.14 -0.55 -77.43 By element: Atomic # 1 Polarization: 40.90 SS G_CDS: -1.19 Total: 39.71 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 6.36 Total: 13.85 kcal Atomic # 7 Polarization: -107.86 SS G_CDS: -6.68 Total: -114.54 kcal Atomic # 8 Polarization: -59.91 SS G_CDS: -1.08 Total: -60.99 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -76.88 -0.55 -77.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120732155.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.852 kcal (2) G-P(sol) polarization free energy of solvation -76.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds