Wall clock time and date at job start Tue Mar 31 2020 22:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99973 * 2 1 4 4 H 1.09000 * 109.46437 * 329.99743 * 3 2 1 5 5 C 1.52996 * 109.47386 * 89.99903 * 3 2 1 6 6 C 1.50700 * 109.46953 * 210.00195 * 3 2 1 7 7 O 1.21283 * 119.99850 * 359.97438 * 6 3 2 8 8 N 1.34776 * 120.00179 * 179.97438 * 6 3 2 9 9 C 1.46500 * 120.00107 * 179.97438 * 8 6 3 10 10 C 1.53948 * 113.57849 * 154.99893 * 9 8 6 11 11 C 1.52908 * 86.78626 * 89.86855 * 10 9 8 12 12 C 1.52905 * 121.13932 * 150.61525 * 11 10 9 13 13 C 1.53948 * 86.78200 * 100.82450 * 12 11 10 14 14 N 1.46906 * 113.57852 * 139.33722 * 13 12 11 15 15 C 1.46901 * 110.99793 * 155.00085 * 14 13 12 16 16 C 1.50701 * 109.46921 * 179.97438 * 15 14 13 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00506 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 120.00009 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47177 * 89.99959 * 23 21 19 25 25 H 1.48505 * 109.47036 * 210.00243 * 23 21 19 26 26 H 1.48499 * 109.46776 * 329.99732 * 23 21 19 27 27 C 1.52910 * 121.13875 * 259.18147 * 11 10 9 28 28 C 1.52910 * 88.03802 * 24.89648 * 11 10 9 29 29 H 1.09001 * 109.47201 * 299.99973 * 1 2 3 30 30 H 1.08998 * 109.47056 * 60.00386 * 1 2 3 31 31 H 1.09004 * 109.46996 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47127 * 180.02562 * 5 3 2 33 33 H 1.09004 * 109.46748 * 299.99918 * 5 3 2 34 34 H 1.08999 * 109.47077 * 59.99798 * 5 3 2 35 35 H 0.97001 * 119.99510 * 359.97438 * 8 6 3 36 36 H 1.08993 * 112.87976 * 23.85957 * 9 8 6 37 37 H 1.09005 * 113.66271 * 335.39718 * 10 9 8 38 38 H 1.08999 * 113.74755 * 204.35742 * 10 9 8 39 39 H 1.08993 * 113.65988 * 346.34952 * 12 11 10 40 40 H 1.08999 * 113.66243 * 215.29852 * 12 11 10 41 41 H 1.09002 * 113.58274 * 270.04979 * 13 12 11 42 42 H 1.00899 * 110.99995 * 31.04483 * 14 13 12 43 43 H 1.09002 * 109.47401 * 59.99808 * 15 14 13 44 44 H 1.09001 * 109.46874 * 299.99821 * 15 14 13 45 45 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 46 46 H 0.96993 * 120.00255 * 180.02562 * 22 21 19 47 47 H 1.09000 * 113.66169 * 144.69776 * 27 11 10 48 48 H 1.08998 * 113.66306 * 13.64833 * 27 11 10 49 49 H 1.08999 * 113.66166 * 89.57472 * 28 11 10 50 50 H 1.09001 * 113.66107 * 220.62624 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3449 1.9993 -0.5139 5 6 2.2177 1.7715 1.4424 6 6 3.3386 1.2639 -0.7105 7 8 3.7475 0.2191 -1.1710 8 7 4.0722 2.3877 -0.8341 9 6 5.3638 2.3472 -1.5243 10 6 5.7873 3.7027 -2.1186 11 6 6.4696 3.9798 -0.7785 12 6 7.7064 4.8745 -0.6910 13 6 6.7597 5.9884 -0.2083 14 7 7.3152 6.7999 0.8829 15 6 6.7055 8.1362 0.9083 16 6 7.2984 8.9375 2.0385 17 8 8.1460 8.4441 2.7523 18 7 6.8877 10.2027 2.2554 19 6 7.4276 10.9319 3.2832 20 1 8.1816 10.4923 3.9193 21 6 7.0038 12.2360 3.5072 22 7 7.5215 12.9352 4.4921 23 14 5.6991 12.9961 2.4075 24 1 4.3540 12.7252 2.9752 25 1 5.9150 14.4630 2.3242 26 1 5.7912 12.4044 1.0486 27 6 5.8125 4.8744 0.2733 28 6 6.5719 2.4674 -0.5776 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.6606 2.7674 1.4424 33 1 1.2568 1.8016 1.9562 34 1 2.8829 1.0776 1.9563 35 1 3.7449 3.2234 -0.4661 36 1 5.4423 1.5188 -2.2283 37 1 4.9504 4.3686 -2.3294 38 1 6.4822 3.6178 -2.9540 39 1 8.1669 5.0799 -1.6572 40 1 8.4255 4.5543 0.0630 41 1 6.3487 6.5923 -1.0174 42 1 8.3198 6.8621 0.8120 43 1 5.6296 8.0419 1.0556 44 1 6.8998 8.6421 -0.0374 45 1 6.2102 10.5973 1.6843 46 1 7.2254 13.8455 4.6487 47 1 5.9992 4.5541 1.2983 48 1 4.7602 5.0797 0.0772 49 1 7.4875 2.0337 -0.9796 50 1 6.3619 2.1464 0.4427 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120732158.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:40 Heat of formation + Delta-G solvation = -64.983834 kcal Electronic energy + Delta-G solvation = -29179.198655 eV Core-core repulsion = 25015.304053 eV Total energy + Delta-G solvation = -4163.894602 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.24838 -39.89052 -38.46359 -37.89585 -36.37397 -34.21247 -33.76720 -32.54892 -31.66672 -31.15473 -27.25246 -26.93807 -26.19649 -25.98478 -24.94029 -23.98085 -22.68473 -21.05795 -20.33394 -19.40422 -18.49638 -18.20923 -17.87137 -17.27270 -16.27280 -16.26547 -15.83737 -15.65336 -15.39804 -15.28084 -15.02257 -14.82190 -14.64093 -14.10340 -13.88127 -13.58384 -13.29694 -13.14474 -13.05358 -12.99166 -12.78229 -12.73104 -12.46368 -12.33426 -12.22225 -12.00170 -11.79992 -11.62710 -11.45280 -11.20388 -11.17315 -10.62270 -10.56279 -10.46509 -10.36548 -10.11627 -9.98488 -9.84825 -9.59390 -9.35632 -8.58903 -8.21635 -8.15745 -6.32921 -3.84448 2.23379 2.45967 2.99762 3.04324 3.12655 3.51401 3.72268 3.99575 4.08004 4.12957 4.22532 4.27615 4.33168 4.40556 4.47843 4.54581 4.59290 4.73692 4.83912 4.90984 4.94952 5.07853 5.16149 5.20185 5.21900 5.24442 5.27563 5.39298 5.45577 5.52721 5.56828 5.61040 5.65204 5.68868 5.71915 5.76871 5.79660 5.85879 5.90762 6.14228 6.20395 6.33147 6.56062 7.13260 7.17076 7.56178 7.57757 7.87409 8.12796 8.57978 8.93199 9.40577 9.80986 10.80228 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014335 B = 0.001969 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.783174 B =14217.298368 C =15426.691756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.069 3.931 4 H 0.087 0.913 5 C -0.172 4.172 6 C 0.517 3.483 7 O -0.519 6.519 8 N -0.708 5.708 9 C 0.123 3.877 10 C -0.122 4.122 11 C -0.107 4.107 12 C -0.127 4.127 13 C 0.062 3.938 14 N -0.656 5.656 15 C 0.048 3.952 16 C 0.449 3.551 17 O -0.565 6.565 18 N -0.591 5.591 19 C -0.305 4.305 20 H 0.119 0.881 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C -0.101 4.101 28 C -0.135 4.135 29 H 0.045 0.955 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.401 0.599 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.352 0.648 43 H 0.085 0.915 44 H 0.043 0.957 45 H 0.370 0.630 46 H 0.273 0.727 47 H 0.096 0.904 48 H 0.059 0.941 49 H 0.092 0.908 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.124 -20.401 -15.407 28.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.008 3.992 4 H 0.105 0.895 5 C -0.230 4.230 6 C 0.302 3.698 7 O -0.393 6.393 8 N -0.362 5.362 9 C 0.018 3.982 10 C -0.160 4.160 11 C -0.108 4.108 12 C -0.165 4.165 13 C -0.049 4.049 14 N -0.289 5.289 15 C -0.085 4.085 16 C 0.235 3.765 17 O -0.446 6.446 18 N -0.231 5.231 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.707 3.293 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.139 4.139 28 C -0.174 4.174 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.237 0.763 36 H 0.120 0.880 37 H 0.092 0.908 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.087 0.913 42 H 0.173 0.827 43 H 0.104 0.896 44 H 0.061 0.939 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.114 0.886 48 H 0.078 0.922 49 H 0.110 0.890 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.552 -21.722 -14.649 29.052 hybrid contribution -1.041 2.031 -1.306 2.629 sum -13.593 -19.691 -15.955 28.759 Atomic orbital electron populations 1.22897 0.80455 1.03361 1.00115 1.88052 1.19787 1.25038 1.94935 1.21941 0.93373 0.87012 0.96903 0.89481 1.22256 1.03712 1.02221 0.94830 1.20406 0.85880 0.83870 0.79656 1.90725 1.71391 1.30096 1.47134 1.45626 1.20331 1.11291 1.58908 1.21841 0.82482 0.98910 0.95012 1.23072 1.00341 0.95987 0.96565 1.22366 0.98010 0.94110 0.96275 1.23047 0.96311 0.95667 1.01472 1.22995 0.96915 0.92822 0.92131 1.60217 1.10983 1.13032 1.44669 1.21762 1.00045 0.89724 0.96989 1.19750 0.86395 0.82540 0.87819 1.90568 1.34396 1.70063 1.49606 1.42216 1.38107 1.12409 1.30336 1.19433 1.21658 0.94991 1.07292 0.86291 1.25044 0.98026 0.96190 0.96956 1.69620 1.42423 1.10690 1.29393 0.86666 0.82311 0.79885 0.80470 1.19611 1.20189 1.19569 1.22838 0.97637 0.94610 0.98802 1.23233 0.98167 0.95285 1.00669 0.93679 0.93808 0.89060 0.90701 0.91028 0.90867 0.76322 0.88028 0.90760 0.88406 0.91464 0.88899 0.91263 0.82748 0.89633 0.93857 0.79726 0.91612 0.88577 0.92212 0.88992 0.90768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.82 101.05 1.09 1.26 16 2 O -0.36 -3.54 9.88 -55.14 -0.54 -4.09 16 3 C 0.07 0.53 3.14 -27.88 -0.09 0.44 16 4 H 0.09 0.44 7.79 -51.93 -0.40 0.04 16 5 C -0.17 -1.06 9.42 37.16 0.35 -0.71 16 6 C 0.52 5.19 7.23 -10.99 -0.08 5.11 16 7 O -0.52 -7.56 16.10 -14.36 -0.23 -7.79 16 8 N -0.71 -5.33 5.15 -52.86 -0.27 -5.60 16 9 C 0.12 0.96 4.32 -66.95 -0.29 0.68 16 10 C -0.12 -0.79 7.59 -26.28 -0.20 -0.99 16 11 C -0.11 -0.82 1.02 -154.71 -0.16 -0.98 16 12 C -0.13 -1.14 7.41 -26.29 -0.19 -1.33 16 13 C 0.06 0.65 4.14 -66.73 -0.28 0.37 16 14 N -0.66 -9.56 6.18 -106.95 -0.66 -10.23 16 15 C 0.05 0.76 6.01 -4.97 -0.03 0.73 16 16 C 0.45 10.02 7.82 -10.98 -0.09 9.93 16 17 O -0.56 -15.00 15.78 5.55 0.09 -14.92 16 18 N -0.59 -13.89 5.09 -10.96 -0.06 -13.94 16 19 C -0.31 -8.57 10.16 -14.94 -0.15 -8.72 16 20 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 21 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 22 N -0.88 -25.59 13.96 55.50 0.77 -24.81 16 23 Si 0.88 19.10 27.74 -169.99 -4.71 14.39 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 27 C -0.10 -0.91 7.18 -26.28 -0.19 -1.10 16 28 C -0.13 -1.09 7.64 -26.28 -0.20 -1.29 16 29 H 0.04 0.19 7.87 -51.93 -0.41 -0.21 16 30 H 0.04 0.20 8.08 -51.93 -0.42 -0.22 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.36 7.57 -51.93 -0.39 -0.04 16 33 H 0.07 0.36 7.87 -51.93 -0.41 -0.05 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.40 2.22 6.99 -40.82 -0.29 1.93 16 36 H 0.10 0.94 7.47 -51.93 -0.39 0.55 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.68 7.86 -51.93 -0.41 0.27 16 42 H 0.35 5.41 8.25 -39.29 -0.32 5.09 16 43 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.04 0.60 8.13 -51.93 -0.42 0.18 16 45 H 0.37 7.59 5.76 -40.82 -0.24 7.36 16 46 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 47 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.06 0.45 7.47 -51.93 -0.39 0.06 16 49 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 408.23 15.07 6.15 6.15 Total: -1.00 -35.77 408.23 -8.33 -44.10 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -8.27 Total: 12.32 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -0.59 Total: 4.41 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -0.21 Total: -54.59 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.69 Total: -26.79 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -4.71 Total: 14.39 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.77 -8.33 -44.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120732158.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.880 kcal (2) G-P(sol) polarization free energy of solvation -35.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds