Wall clock time and date at job start Tue Mar 31 2020 22:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99973 * 2 1 4 4 H 1.09000 * 109.46437 * 329.99743 * 3 2 1 5 5 C 1.52996 * 109.47386 * 89.99903 * 3 2 1 6 6 C 1.50700 * 109.46953 * 210.00195 * 3 2 1 7 7 O 1.21283 * 119.99850 * 359.97438 * 6 3 2 8 8 N 1.34776 * 120.00179 * 179.97438 * 6 3 2 9 9 C 1.46500 * 120.00107 * 179.97438 * 8 6 3 10 10 C 1.53948 * 113.57849 * 154.99893 * 9 8 6 11 11 C 1.52908 * 86.78626 * 89.86855 * 10 9 8 12 12 C 1.52905 * 121.13932 * 150.61525 * 11 10 9 13 13 C 1.53948 * 86.78200 * 100.82450 * 12 11 10 14 14 N 1.46906 * 113.57852 * 139.33722 * 13 12 11 15 15 C 1.46901 * 110.99793 * 155.00085 * 14 13 12 16 16 C 1.50701 * 109.46921 * 179.97438 * 15 14 13 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00506 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 120.00009 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47177 * 89.99959 * 23 21 19 25 25 H 1.48505 * 109.47036 * 210.00243 * 23 21 19 26 26 H 1.48499 * 109.46776 * 329.99732 * 23 21 19 27 27 C 1.52910 * 121.13875 * 259.18147 * 11 10 9 28 28 C 1.52910 * 88.03802 * 24.89648 * 11 10 9 29 29 H 1.09001 * 109.47201 * 299.99973 * 1 2 3 30 30 H 1.08998 * 109.47056 * 60.00386 * 1 2 3 31 31 H 1.09004 * 109.46996 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47127 * 180.02562 * 5 3 2 33 33 H 1.09004 * 109.46748 * 299.99918 * 5 3 2 34 34 H 1.08999 * 109.47077 * 59.99798 * 5 3 2 35 35 H 0.97001 * 119.99510 * 359.97438 * 8 6 3 36 36 H 1.08993 * 112.87976 * 23.85957 * 9 8 6 37 37 H 1.09005 * 113.66271 * 335.39718 * 10 9 8 38 38 H 1.08999 * 113.74755 * 204.35742 * 10 9 8 39 39 H 1.08993 * 113.65988 * 346.34952 * 12 11 10 40 40 H 1.08999 * 113.66243 * 215.29852 * 12 11 10 41 41 H 1.09002 * 113.58274 * 270.04979 * 13 12 11 42 42 H 1.00899 * 110.99995 * 31.04483 * 14 13 12 43 43 H 1.09002 * 109.47401 * 59.99808 * 15 14 13 44 44 H 1.09001 * 109.46874 * 299.99821 * 15 14 13 45 45 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 46 46 H 0.96993 * 120.00255 * 180.02562 * 22 21 19 47 47 H 1.09000 * 113.66169 * 144.69776 * 27 11 10 48 48 H 1.08998 * 113.66306 * 13.64833 * 27 11 10 49 49 H 1.08999 * 113.66166 * 89.57472 * 28 11 10 50 50 H 1.09001 * 113.66107 * 220.62624 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3449 1.9993 -0.5139 5 6 2.2177 1.7715 1.4424 6 6 3.3386 1.2639 -0.7105 7 8 3.7475 0.2191 -1.1710 8 7 4.0722 2.3877 -0.8341 9 6 5.3638 2.3472 -1.5243 10 6 5.7873 3.7027 -2.1186 11 6 6.4696 3.9798 -0.7785 12 6 7.7064 4.8745 -0.6910 13 6 6.7597 5.9884 -0.2083 14 7 7.3152 6.7999 0.8829 15 6 6.7055 8.1362 0.9083 16 6 7.2984 8.9375 2.0385 17 8 8.1460 8.4441 2.7523 18 7 6.8877 10.2027 2.2554 19 6 7.4276 10.9319 3.2832 20 1 8.1816 10.4923 3.9193 21 6 7.0038 12.2360 3.5072 22 7 7.5215 12.9352 4.4921 23 14 5.6991 12.9961 2.4075 24 1 4.3540 12.7252 2.9752 25 1 5.9150 14.4630 2.3242 26 1 5.7912 12.4044 1.0486 27 6 5.8125 4.8744 0.2733 28 6 6.5719 2.4674 -0.5776 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.6606 2.7674 1.4424 33 1 1.2568 1.8016 1.9562 34 1 2.8829 1.0776 1.9563 35 1 3.7449 3.2234 -0.4661 36 1 5.4423 1.5188 -2.2283 37 1 4.9504 4.3686 -2.3294 38 1 6.4822 3.6178 -2.9540 39 1 8.1669 5.0799 -1.6572 40 1 8.4255 4.5543 0.0630 41 1 6.3487 6.5923 -1.0174 42 1 8.3198 6.8621 0.8120 43 1 5.6296 8.0419 1.0556 44 1 6.8998 8.6421 -0.0374 45 1 6.2102 10.5973 1.6843 46 1 7.2254 13.8455 4.6487 47 1 5.9992 4.5541 1.2983 48 1 4.7602 5.0797 0.0772 49 1 7.4875 2.0337 -0.9796 50 1 6.3619 2.1464 0.4427 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120732158.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:39 Heat of formation + Delta-G solvation = -93.377373 kcal Electronic energy + Delta-G solvation = -29180.429891 eV Core-core repulsion = 25015.304053 eV Total energy + Delta-G solvation = -4165.125838 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.93554 -40.64657 -40.17242 -38.57731 -37.28777 -36.01174 -34.81930 -33.76334 -33.35666 -31.78727 -28.44820 -27.70118 -26.80566 -26.68903 -25.92694 -25.27746 -23.49121 -21.76007 -21.30354 -21.07495 -20.25681 -19.00902 -18.51134 -17.85441 -17.75809 -16.99151 -16.89934 -16.66595 -16.38083 -16.30694 -16.09643 -15.70671 -15.59278 -15.35534 -15.01664 -14.58935 -14.35335 -14.26697 -14.10812 -13.91175 -13.77708 -13.51087 -13.39848 -13.22989 -13.09487 -12.96575 -12.82580 -12.75801 -12.40409 -12.20738 -12.11887 -11.97155 -11.91078 -11.50357 -11.23502 -11.12609 -10.99735 -10.84392 -10.52561 -10.37538 -10.23922 -10.04530 -9.25603 -8.40381 -6.01569 1.30848 1.36967 1.45841 1.50483 1.86211 1.97474 2.24177 2.78221 2.99947 3.15969 3.37946 3.50134 3.60706 3.62858 3.69893 3.85418 3.91246 3.94923 4.00315 4.05727 4.19893 4.42147 4.45150 4.50659 4.54539 4.57781 4.62553 4.65845 4.78289 4.83917 4.86177 4.87604 4.92821 4.93680 5.00139 5.04778 5.12312 5.17473 5.19732 5.38130 5.48977 5.55727 5.66934 5.94024 6.06456 6.20987 6.44554 6.52838 6.61260 6.89315 7.19742 7.41123 7.98328 8.77341 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014335 B = 0.001969 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.783174 B =14217.298368 C =15426.691756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.398 6.398 3 C 0.069 3.931 4 H 0.118 0.882 5 C -0.168 4.168 6 C 0.512 3.488 7 O -0.574 6.574 8 N -0.693 5.693 9 C 0.118 3.882 10 C -0.104 4.104 11 C -0.095 4.095 12 C -0.126 4.126 13 C 0.059 3.941 14 N -0.677 5.677 15 C 0.063 3.937 16 C 0.447 3.553 17 O -0.616 6.616 18 N -0.591 5.591 19 C -0.329 4.329 20 H 0.053 0.947 21 C -0.018 4.018 22 N -0.935 5.935 23 Si 0.967 3.033 24 H -0.256 1.256 25 H -0.276 1.276 26 H -0.229 1.229 27 C -0.100 4.100 28 C -0.138 4.138 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.414 0.586 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.343 0.657 43 H 0.114 0.886 44 H 0.076 0.924 45 H 0.390 0.610 46 H 0.279 0.721 47 H 0.073 0.927 48 H 0.083 0.917 49 H 0.095 0.905 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.318 -19.392 -18.625 31.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.317 6.317 3 C 0.008 3.992 4 H 0.136 0.864 5 C -0.226 4.226 6 C 0.298 3.702 7 O -0.453 6.453 8 N -0.347 5.347 9 C 0.012 3.988 10 C -0.142 4.142 11 C -0.096 4.096 12 C -0.164 4.164 13 C -0.050 4.050 14 N -0.309 5.309 15 C -0.069 4.069 16 C 0.235 3.765 17 O -0.501 6.501 18 N -0.233 5.233 19 C -0.459 4.459 20 H 0.071 0.929 21 C -0.216 4.216 22 N -0.576 5.576 23 Si 0.787 3.213 24 H -0.181 1.181 25 H -0.202 1.202 26 H -0.153 1.153 27 C -0.138 4.138 28 C -0.177 4.177 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.252 0.748 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.129 0.871 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.109 0.891 42 H 0.162 0.838 43 H 0.132 0.868 44 H 0.094 0.906 45 H 0.226 0.774 46 H 0.088 0.912 47 H 0.092 0.908 48 H 0.101 0.899 49 H 0.114 0.886 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.766 -20.704 -17.881 31.574 hybrid contribution 0.071 1.613 -0.204 1.628 sum -15.694 -19.090 -18.085 30.624 Atomic orbital electron populations 1.23084 0.78657 1.04140 1.01479 1.88007 1.21927 1.26561 1.95170 1.22087 0.92415 0.87022 0.97651 0.86405 1.22250 1.04207 1.02379 0.93746 1.20988 0.86751 0.83485 0.78950 1.90697 1.72818 1.32090 1.49659 1.45536 1.19860 1.11247 1.58013 1.21858 0.82427 0.99637 0.94856 1.23032 1.00717 0.94566 0.95889 1.22248 0.97274 0.93165 0.96870 1.23018 0.96366 0.95380 1.01606 1.23181 0.97543 0.92679 0.91604 1.60246 1.10576 1.12756 1.47322 1.21693 1.00819 0.89500 0.94898 1.21112 0.84924 0.82157 0.88328 1.90547 1.36610 1.71104 1.51839 1.42037 1.38735 1.12773 1.29740 1.19001 1.21799 0.96282 1.08772 0.92873 1.26159 1.00767 0.96006 0.98659 1.69810 1.44571 1.11404 1.31824 0.85338 0.78094 0.78353 0.79547 1.18055 1.20162 1.15262 1.22800 0.98869 0.94229 0.97950 1.23259 0.98624 0.95920 0.99880 0.92036 0.92600 0.88774 0.89042 0.89509 0.92999 0.74808 0.89617 0.89117 0.87089 0.90065 0.90580 0.89123 0.83784 0.86810 0.90594 0.77425 0.91171 0.90799 0.89870 0.88639 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.82 113.37 1.23 1.45 16 2 O -0.40 -7.59 9.88 -129.94 -1.28 -8.87 16 3 C 0.07 0.95 3.14 29.85 0.09 1.04 16 4 H 0.12 0.84 7.79 -2.39 -0.02 0.82 16 5 C -0.17 -1.77 9.42 71.98 0.68 -1.09 16 6 C 0.51 9.94 7.23 87.66 0.63 10.58 16 7 O -0.57 -17.16 16.10 16.00 0.26 -16.90 16 8 N -0.69 -9.19 5.15 -439.54 -2.26 -11.45 16 9 C 0.12 1.67 4.32 45.63 0.20 1.86 16 10 C -0.10 -0.98 7.59 30.88 0.23 -0.75 16 11 C -0.09 -1.22 1.02 -52.31 -0.05 -1.28 16 12 C -0.13 -1.97 7.41 30.88 0.23 -1.74 16 13 C 0.06 1.04 4.14 45.55 0.19 1.23 16 14 N -0.68 -18.38 6.18 -492.27 -3.04 -21.42 16 15 C 0.06 1.79 6.01 85.56 0.51 2.31 16 16 C 0.45 19.67 7.82 87.66 0.69 20.36 16 17 O -0.62 -33.93 15.78 -3.07 -0.05 -33.98 16 18 N -0.59 -27.26 5.09 -306.98 -1.56 -28.82 16 19 C -0.33 -19.15 10.16 84.04 0.85 -18.29 16 20 H 0.05 3.71 7.39 -2.91 -0.02 3.68 16 21 C -0.02 -0.96 5.50 84.92 0.47 -0.50 16 22 N -0.94 -56.10 13.96 21.66 0.30 -55.80 16 23 Si 0.97 37.84 27.74 68.60 1.90 39.74 16 24 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 25 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 26 H -0.23 -7.41 6.52 99.48 0.65 -6.77 16 27 C -0.10 -1.53 7.18 30.88 0.22 -1.30 16 28 C -0.14 -2.10 7.64 30.88 0.24 -1.87 16 29 H 0.06 0.39 7.87 -2.39 -0.02 0.38 16 30 H 0.06 0.41 8.08 -2.39 -0.02 0.39 16 31 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.09 0.62 7.57 -2.39 -0.02 0.60 16 33 H 0.09 0.65 7.87 -2.39 -0.02 0.64 16 34 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.41 3.27 6.99 -92.71 -0.65 2.63 16 36 H 0.09 1.54 7.47 -2.39 -0.02 1.53 16 37 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 38 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.09 1.28 7.86 -2.39 -0.02 1.26 16 42 H 0.34 10.30 8.25 -89.69 -0.74 9.56 16 43 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 44 H 0.08 1.72 8.13 -2.39 -0.02 1.70 16 45 H 0.39 14.66 5.76 -92.71 -0.53 14.12 16 46 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 47 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.08 0.88 7.47 -2.39 -0.02 0.86 16 49 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 50 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -86.09 408.23 -0.35 -86.43 By element: Atomic # 1 Polarization: 40.06 SS G_CDS: -1.01 Total: 39.05 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 6.41 Total: 12.02 kcal Atomic # 7 Polarization: -110.93 SS G_CDS: -6.57 Total: -117.50 kcal Atomic # 8 Polarization: -58.68 SS G_CDS: -1.07 Total: -59.75 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 1.90 Total: 39.74 kcal Total: -86.09 -0.35 -86.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120732158.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.945 kcal (2) G-P(sol) polarization free energy of solvation -86.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds