Wall clock time and date at job start Wed Apr 1 2020 00:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46502 * 109.46973 * 2 1 4 4 C 1.46501 * 119.99904 * 270.00348 * 3 2 1 5 5 C 1.50700 * 109.46973 * 269.99721 * 4 3 2 6 6 H 1.08008 * 119.99817 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00579 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99319 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00588 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46694 * 59.99978 * 9 7 5 11 11 H 1.48495 * 109.47311 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47232 * 300.00543 * 9 7 5 13 13 C 1.34776 * 119.99899 * 89.99610 * 3 2 1 14 14 O 1.21279 * 119.99957 * 179.97438 * 13 3 2 15 15 C 1.50693 * 120.00088 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.47103 * 179.97438 * 15 13 3 17 17 C 1.46902 * 110.99798 * 179.97438 * 16 15 13 18 18 C 1.52996 * 109.46886 * 179.97438 * 17 16 15 19 19 N 1.46505 * 109.47096 * 180.02562 * 18 17 16 20 20 C 1.34780 * 119.99835 * 179.97438 * 19 18 17 21 21 O 1.21739 * 120.00300 * 0.02562 * 20 19 18 22 22 C 1.41799 * 119.99695 * 179.97438 * 20 19 18 23 23 C 1.33449 * 118.78614 * 179.97438 * 22 20 19 24 24 O 1.34358 * 123.08176 * 180.41653 * 23 22 20 25 25 C 1.45355 * 117.47910 * 343.67762 * 24 23 22 26 26 C 1.53483 * 108.29863 * 47.45324 * 25 24 23 27 27 C 1.50420 * 118.78861 * 359.97438 * 22 20 19 28 28 H 1.08996 * 109.47224 * 299.99949 * 1 2 3 29 29 H 1.09003 * 109.46728 * 59.99908 * 1 2 3 30 30 H 1.09002 * 109.47058 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47059 * 240.00500 * 2 1 3 32 32 H 1.08993 * 109.46927 * 119.99599 * 2 1 3 33 33 H 1.08994 * 109.47433 * 30.00056 * 4 3 2 34 34 H 1.09000 * 109.47329 * 150.00049 * 4 3 2 35 35 H 0.97007 * 120.00179 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.47354 * 59.99169 * 15 13 3 37 37 H 1.09003 * 109.46851 * 299.99514 * 15 13 3 38 38 H 1.00894 * 110.99850 * 303.94700 * 16 15 13 39 39 H 1.09001 * 109.46950 * 59.99925 * 17 16 15 40 40 H 1.09002 * 109.47387 * 300.00294 * 17 16 15 41 41 H 1.09001 * 109.47144 * 60.00341 * 18 17 16 42 42 H 1.09002 * 109.47590 * 300.00467 * 18 17 16 43 43 H 0.96998 * 120.00265 * 0.02562 * 19 18 17 44 44 H 1.08004 * 118.46234 * 0.44690 * 23 22 20 45 45 H 1.09002 * 109.70507 * 167.16907 * 25 24 23 46 46 H 1.09003 * 109.70612 * 287.74141 * 25 24 23 47 47 H 1.09006 * 109.70524 * 57.00947 * 26 25 24 48 48 H 1.08994 * 109.70610 * 177.62587 * 26 25 24 49 49 H 1.09009 * 109.44806 * 282.35117 * 27 22 20 50 50 H 1.09000 * 109.45967 * 42.31139 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1494 2.3906 -2.8775 8 7 3.3496 3.1274 -3.6171 9 14 5.9138 2.0977 -3.4164 10 1 6.1417 0.6411 -3.5942 11 1 6.1616 2.7986 -4.7018 12 1 6.8410 2.6209 -2.3811 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9922 1.3061 2.4722 16 7 2.3108 2.2059 3.5888 17 6 2.0773 1.5457 4.8802 18 6 2.4199 2.5116 6.0161 19 7 2.1876 1.8530 7.3040 20 6 2.4239 2.5170 8.4528 21 8 2.8300 3.6642 8.4203 22 6 2.1985 1.8797 9.6993 23 6 2.4410 2.5595 10.8217 24 8 2.2654 2.0379 12.0474 25 6 1.4618 0.8314 12.1541 26 6 1.9390 -0.1615 11.0855 27 6 1.6950 0.4623 9.7076 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.5817 1.6878 -2.0283 34 1 2.0955 3.1411 -1.1384 35 1 3.6758 3.5186 -4.4427 36 1 2.6227 0.4188 2.5298 37 1 0.9443 1.0115 2.5301 38 1 3.2591 2.5440 3.5215 39 1 2.7078 0.6597 4.9545 40 1 1.0298 1.2534 4.9547 41 1 1.7897 3.3979 5.9420 42 1 3.4674 2.8035 5.9414 43 1 1.8644 0.9388 7.3299 44 1 2.7945 3.5768 10.7412 45 1 1.5861 0.3934 13.1445 46 1 0.4119 1.0733 11.9884 47 1 3.0031 -0.3586 11.2159 48 1 1.3788 -1.0924 11.1725 49 1 0.6267 0.4554 9.4905 50 1 2.2233 -0.1152 8.9490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001124656097.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:16 Heat of formation + Delta-G solvation = -94.976217 kcal Electronic energy + Delta-G solvation = -28629.925349 eV Core-core repulsion = 24464.730180 eV Total energy + Delta-G solvation = -4165.195169 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.03327 -39.47918 -39.11128 -36.56350 -35.26904 -34.89469 -34.10287 -32.77616 -32.12566 -30.13187 -29.65320 -27.42398 -26.31473 -25.57921 -24.28085 -23.02075 -22.46379 -22.08277 -21.59187 -19.34634 -18.55869 -18.21679 -16.95449 -16.59348 -16.45531 -16.30422 -16.10458 -15.87030 -15.53669 -15.31749 -15.11416 -14.64952 -14.40730 -14.18234 -13.96510 -13.69356 -13.58368 -13.36570 -13.34033 -13.17024 -13.05373 -12.41557 -12.18331 -11.98138 -11.90548 -11.74948 -11.59076 -11.51511 -11.43951 -11.22456 -11.16410 -10.91961 -10.73878 -10.51868 -10.13213 -10.12337 -9.64195 -9.32477 -8.93585 -8.91483 -8.42267 -8.40792 -7.64578 -6.03119 -4.08058 1.01457 2.65559 3.00584 3.10766 3.31753 3.36803 3.38175 3.45881 3.81161 4.04655 4.12615 4.28670 4.39660 4.47742 4.58070 4.64206 4.69396 4.85719 4.88232 4.97340 5.03950 5.09278 5.23840 5.24243 5.25211 5.31277 5.44059 5.44880 5.48909 5.51496 5.64368 5.72221 5.74905 5.78878 5.84682 6.00690 6.20621 6.22284 6.47145 6.70948 6.77990 7.11731 7.29691 7.32422 7.47566 7.56741 7.93279 8.05117 8.24835 8.44447 8.91308 9.12625 9.56967 11.04810 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020509 B = 0.001653 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.948951 B =16935.373072 C =17574.004878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.527 4.527 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.503 3.497 14 O -0.527 6.527 15 C 0.043 3.957 16 N -0.669 5.669 17 C 0.051 3.949 18 C 0.120 3.880 19 N -0.728 5.728 20 C 0.572 3.428 21 O -0.556 6.556 22 C -0.320 4.320 23 C 0.162 3.838 24 O -0.310 6.310 25 C 0.051 3.949 26 C -0.157 4.157 27 C -0.074 4.074 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.031 0.969 34 H 0.043 0.957 35 H 0.264 0.736 36 H 0.054 0.946 37 H 0.095 0.905 38 H 0.355 0.645 39 H 0.034 0.966 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.398 0.602 44 H 0.181 0.819 45 H 0.109 0.891 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.088 0.912 49 H 0.075 0.925 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.504 -12.507 29.397 32.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.566 4.566 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.289 3.711 14 O -0.403 6.403 15 C -0.089 4.089 16 N -0.303 5.303 17 C -0.079 4.079 18 C -0.004 4.004 19 N -0.381 5.381 20 C 0.363 3.637 21 O -0.437 6.437 22 C -0.325 4.325 23 C 0.094 3.906 24 O -0.221 6.221 25 C -0.023 4.023 26 C -0.195 4.195 27 C -0.111 4.111 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.113 0.887 38 H 0.175 0.825 39 H 0.052 0.948 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.232 0.768 44 H 0.198 0.802 45 H 0.128 0.872 46 H 0.093 0.907 47 H 0.098 0.902 48 H 0.106 0.894 49 H 0.094 0.906 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.550 -10.598 29.338 32.094 hybrid contribution 1.388 -1.566 -0.692 2.204 sum -6.162 -12.164 28.646 31.726 Atomic orbital electron populations 1.22229 0.96808 1.01320 1.02425 1.21404 0.93512 0.84325 1.02525 1.48251 1.64050 1.13171 1.07701 1.19249 0.96147 0.93705 0.78071 1.21394 0.96970 1.31972 1.06287 0.92629 1.24934 0.97809 0.94933 0.96415 1.69924 1.35705 1.33266 1.14378 0.86565 0.84860 0.78162 0.77849 1.20325 1.21165 1.20203 1.20139 0.79021 0.87104 0.84854 1.90688 1.45006 1.17694 1.86888 1.21899 1.02343 0.94228 0.90460 1.59960 1.33126 1.37565 0.99632 1.22069 1.01558 0.95085 0.89186 1.21243 1.02217 0.96172 0.80754 1.45800 1.68884 1.17518 1.05890 1.16538 0.77459 0.85800 0.83935 1.90843 1.47168 1.17756 1.87956 1.20015 1.19454 0.98985 0.94027 1.23028 0.88299 0.96737 0.82539 1.86296 1.66615 1.42121 1.27044 1.23580 0.94461 0.83354 1.00866 1.22193 1.03280 0.99081 0.94935 1.20269 1.01323 0.91822 0.97661 0.93038 0.91977 0.92255 0.89972 0.91982 0.95060 0.93854 0.92670 0.92855 0.88690 0.82470 0.94829 0.90445 0.90144 0.91292 0.76754 0.80205 0.87247 0.90694 0.90238 0.89367 0.90623 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.24 37.16 0.38 -1.81 16 2 C 0.11 1.65 5.93 -4.04 -0.02 1.62 16 3 N -0.60 -12.44 2.46 -175.06 -0.43 -12.87 16 4 C 0.25 6.46 5.16 -5.19 -0.03 6.44 16 5 C -0.53 -14.95 9.39 -34.44 -0.32 -15.28 16 6 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.67 13.29 55.43 0.74 -25.94 16 9 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.50 10.34 7.71 -10.99 -0.08 10.25 16 14 O -0.53 -13.35 15.78 5.56 0.09 -13.26 16 15 C 0.04 0.62 4.72 -4.98 -0.02 0.59 16 16 N -0.67 -9.32 6.13 -115.06 -0.70 -10.02 16 17 C 0.05 0.50 5.80 -3.82 -0.02 0.48 16 18 C 0.12 1.29 5.93 -4.04 -0.02 1.27 16 19 N -0.73 -6.55 5.47 -63.17 -0.35 -6.90 16 20 C 0.57 6.31 7.53 -14.90 -0.11 6.20 16 21 O -0.56 -8.39 15.92 5.15 0.08 -8.31 16 22 C -0.32 -2.60 5.70 -105.07 -0.60 -3.20 16 23 C 0.16 1.30 10.46 29.06 0.30 1.60 16 24 O -0.31 -2.18 10.48 -14.91 -0.16 -2.34 16 25 C 0.05 0.20 7.15 37.41 0.27 0.46 16 26 C -0.16 -0.55 6.23 -26.37 -0.16 -0.72 16 27 C -0.07 -0.36 5.08 -27.91 -0.14 -0.50 16 28 H 0.05 0.63 7.22 -51.93 -0.38 0.26 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 32 H 0.06 0.78 6.44 -51.93 -0.33 0.44 16 33 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 34 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.05 0.67 7.40 -51.93 -0.38 0.28 16 37 H 0.10 1.17 7.19 -51.93 -0.37 0.80 16 38 H 0.36 5.32 8.43 -39.30 -0.33 4.99 16 39 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.40 2.41 6.58 -40.82 -0.27 2.14 16 44 H 0.18 1.49 7.21 -52.48 -0.38 1.11 16 45 H 0.11 0.21 8.14 -51.93 -0.42 -0.22 16 46 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 47 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 49 H 0.08 0.30 8.14 -51.92 -0.42 -0.12 16 50 H 0.08 0.32 7.15 -51.93 -0.37 -0.05 16 LS Contribution 409.74 15.07 6.17 6.17 Total: -1.00 -36.66 409.74 -8.50 -45.16 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -8.24 Total: 2.31 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: -0.69 Total: 9.08 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.74 Total: -55.73 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: 0.01 Total: -23.91 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.66 -8.50 -45.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124656097.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.812 kcal (2) G-P(sol) polarization free energy of solvation -36.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds