Wall clock time and date at job start Wed Apr 1 2020 00:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46502 * 109.46973 * 2 1 4 4 C 1.46501 * 119.99904 * 270.00348 * 3 2 1 5 5 C 1.50700 * 109.46973 * 269.99721 * 4 3 2 6 6 H 1.08008 * 119.99817 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00579 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99319 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00588 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46694 * 59.99978 * 9 7 5 11 11 H 1.48495 * 109.47311 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47232 * 300.00543 * 9 7 5 13 13 C 1.34776 * 119.99899 * 89.99610 * 3 2 1 14 14 O 1.21279 * 119.99957 * 179.97438 * 13 3 2 15 15 C 1.50693 * 120.00088 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.47103 * 179.97438 * 15 13 3 17 17 C 1.46902 * 110.99798 * 179.97438 * 16 15 13 18 18 C 1.52996 * 109.46886 * 179.97438 * 17 16 15 19 19 N 1.46505 * 109.47096 * 180.02562 * 18 17 16 20 20 C 1.34780 * 119.99835 * 179.97438 * 19 18 17 21 21 O 1.21739 * 120.00300 * 0.02562 * 20 19 18 22 22 C 1.41799 * 119.99695 * 179.97438 * 20 19 18 23 23 C 1.33449 * 118.78614 * 179.97438 * 22 20 19 24 24 O 1.34358 * 123.08176 * 180.41653 * 23 22 20 25 25 C 1.45355 * 117.47910 * 343.67762 * 24 23 22 26 26 C 1.53483 * 108.29863 * 47.45324 * 25 24 23 27 27 C 1.50420 * 118.78861 * 359.97438 * 22 20 19 28 28 H 1.08996 * 109.47224 * 299.99949 * 1 2 3 29 29 H 1.09003 * 109.46728 * 59.99908 * 1 2 3 30 30 H 1.09002 * 109.47058 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47059 * 240.00500 * 2 1 3 32 32 H 1.08993 * 109.46927 * 119.99599 * 2 1 3 33 33 H 1.08994 * 109.47433 * 30.00056 * 4 3 2 34 34 H 1.09000 * 109.47329 * 150.00049 * 4 3 2 35 35 H 0.97007 * 120.00179 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.47354 * 59.99169 * 15 13 3 37 37 H 1.09003 * 109.46851 * 299.99514 * 15 13 3 38 38 H 1.00894 * 110.99850 * 303.94700 * 16 15 13 39 39 H 1.09001 * 109.46950 * 59.99925 * 17 16 15 40 40 H 1.09002 * 109.47387 * 300.00294 * 17 16 15 41 41 H 1.09001 * 109.47144 * 60.00341 * 18 17 16 42 42 H 1.09002 * 109.47590 * 300.00467 * 18 17 16 43 43 H 0.96998 * 120.00265 * 0.02562 * 19 18 17 44 44 H 1.08004 * 118.46234 * 0.44690 * 23 22 20 45 45 H 1.09002 * 109.70507 * 167.16907 * 25 24 23 46 46 H 1.09003 * 109.70612 * 287.74141 * 25 24 23 47 47 H 1.09006 * 109.70524 * 57.00947 * 26 25 24 48 48 H 1.08994 * 109.70610 * 177.62587 * 26 25 24 49 49 H 1.09009 * 109.44806 * 282.35117 * 27 22 20 50 50 H 1.09000 * 109.45967 * 42.31139 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1494 2.3906 -2.8775 8 7 3.3496 3.1274 -3.6171 9 14 5.9138 2.0977 -3.4164 10 1 6.1417 0.6411 -3.5942 11 1 6.1616 2.7986 -4.7018 12 1 6.8410 2.6209 -2.3811 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9922 1.3061 2.4722 16 7 2.3108 2.2059 3.5888 17 6 2.0773 1.5457 4.8802 18 6 2.4199 2.5116 6.0161 19 7 2.1876 1.8530 7.3040 20 6 2.4239 2.5170 8.4528 21 8 2.8300 3.6642 8.4203 22 6 2.1985 1.8797 9.6993 23 6 2.4410 2.5595 10.8217 24 8 2.2654 2.0379 12.0474 25 6 1.4618 0.8314 12.1541 26 6 1.9390 -0.1615 11.0855 27 6 1.6950 0.4623 9.7076 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.5817 1.6878 -2.0283 34 1 2.0955 3.1411 -1.1384 35 1 3.6758 3.5186 -4.4427 36 1 2.6227 0.4188 2.5298 37 1 0.9443 1.0115 2.5301 38 1 3.2591 2.5440 3.5215 39 1 2.7078 0.6597 4.9545 40 1 1.0298 1.2534 4.9547 41 1 1.7897 3.3979 5.9420 42 1 3.4674 2.8035 5.9414 43 1 1.8644 0.9388 7.3299 44 1 2.7945 3.5768 10.7412 45 1 1.5861 0.3934 13.1445 46 1 0.4119 1.0733 11.9884 47 1 3.0031 -0.3586 11.2159 48 1 1.3788 -1.0924 11.1725 49 1 0.6267 0.4554 9.4905 50 1 2.2233 -0.1152 8.9490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001124656097.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:15 Heat of formation + Delta-G solvation = -123.814309 kcal Electronic energy + Delta-G solvation = -28631.175863 eV Core-core repulsion = 24464.730180 eV Total energy + Delta-G solvation = -4166.445682 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.65720 -40.72275 -40.14359 -37.60769 -36.84816 -35.63614 -34.98233 -34.73629 -32.62738 -31.63744 -30.71006 -29.08679 -26.93118 -26.66167 -25.12051 -24.52788 -23.76002 -23.07242 -22.30299 -20.04517 -19.83150 -18.93414 -18.60618 -17.87742 -17.67377 -17.33182 -17.13983 -16.88684 -16.51246 -16.38579 -16.09292 -15.87694 -15.39745 -15.04604 -14.84416 -14.73916 -14.62406 -14.53942 -14.26838 -14.12218 -13.93868 -13.63436 -13.50611 -13.42018 -13.21118 -13.06321 -12.65264 -12.63061 -12.48028 -12.41220 -12.29202 -12.12868 -11.84362 -11.78167 -11.72548 -11.61238 -10.99872 -10.64041 -10.56570 -10.19456 -9.49179 -9.44663 -9.38993 -8.21694 -6.36897 0.34887 1.35790 1.40578 1.47632 1.88396 2.02208 2.23430 2.33666 2.39343 2.51328 3.07480 3.36216 3.72481 3.73333 3.75398 3.87625 3.96625 4.09726 4.14216 4.21023 4.28114 4.35500 4.39770 4.41106 4.47395 4.53131 4.60142 4.69629 4.75472 4.89246 4.92355 4.94989 4.97832 5.02177 5.07712 5.09931 5.20354 5.23553 5.24387 5.40219 5.42731 5.58822 5.83128 5.93489 6.07538 6.19768 6.22707 6.58971 6.71385 6.85388 7.26749 7.29448 7.54352 8.84959 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020509 B = 0.001653 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.948951 B =16935.373072 C =17574.004878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.604 5.604 4 C 0.263 3.737 5 C -0.543 4.543 6 H 0.055 0.945 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.258 1.258 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.491 3.509 14 O -0.590 6.590 15 C 0.062 3.938 16 N -0.693 5.693 17 C 0.062 3.938 18 C 0.126 3.874 19 N -0.712 5.712 20 C 0.564 3.436 21 O -0.608 6.608 22 C -0.326 4.326 23 C 0.164 3.836 24 O -0.321 6.321 25 C 0.042 3.958 26 C -0.153 4.153 27 C -0.073 4.073 28 H 0.061 0.939 29 H 0.034 0.966 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.021 0.979 34 H -0.007 1.007 35 H 0.266 0.734 36 H 0.086 0.914 37 H 0.126 0.874 38 H 0.345 0.655 39 H 0.060 0.940 40 H 0.099 0.901 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.416 0.584 44 H 0.166 0.834 45 H 0.131 0.869 46 H 0.084 0.916 47 H 0.071 0.929 48 H 0.115 0.885 49 H 0.089 0.911 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.991 -16.610 31.215 36.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.336 5.336 4 C 0.141 3.859 5 C -0.582 4.582 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.183 1.183 11 H -0.205 1.205 12 H -0.204 1.204 13 C 0.279 3.721 14 O -0.470 6.470 15 C -0.070 4.070 16 N -0.326 5.326 17 C -0.067 4.067 18 C 0.001 3.999 19 N -0.365 5.365 20 C 0.357 3.643 21 O -0.493 6.493 22 C -0.331 4.331 23 C 0.095 3.905 24 O -0.232 6.232 25 C -0.031 4.031 26 C -0.190 4.190 27 C -0.110 4.110 28 H 0.080 0.920 29 H 0.053 0.947 30 H 0.115 0.885 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.039 0.961 34 H 0.011 0.989 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.144 0.856 38 H 0.163 0.837 39 H 0.078 0.922 40 H 0.117 0.883 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.254 0.746 44 H 0.183 0.817 45 H 0.149 0.851 46 H 0.103 0.897 47 H 0.090 0.910 48 H 0.133 0.867 49 H 0.107 0.893 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.090 -14.813 31.180 35.455 hybrid contribution 1.482 -0.277 -1.189 1.920 sum -6.608 -15.090 29.991 34.217 Atomic orbital electron populations 1.22163 0.94639 1.03501 1.01651 1.21767 0.95269 0.81218 1.04020 1.48281 1.64089 1.15157 1.06095 1.18659 0.95216 0.91416 0.80604 1.21700 0.97926 1.32010 1.06526 0.92721 1.25887 1.02426 0.94508 0.96504 1.70056 1.37836 1.34112 1.14822 0.85464 0.78964 0.79053 0.77291 1.18287 1.20459 1.20430 1.21353 0.77393 0.86674 0.86667 1.90654 1.47707 1.20674 1.87941 1.21811 1.04681 0.93929 0.86574 1.59936 1.32676 1.38810 1.01218 1.22049 1.03339 0.94892 0.86380 1.21044 1.00633 0.96104 0.82138 1.45601 1.68063 1.18119 1.04718 1.17054 0.76668 0.85277 0.85271 1.90817 1.49678 1.20113 1.88678 1.20074 1.19947 1.00726 0.92346 1.22902 0.87971 0.96453 0.83208 1.86282 1.67007 1.43597 1.26309 1.23931 0.94522 0.82286 1.02372 1.22201 1.03249 0.99825 0.93717 1.20372 1.02073 0.89578 0.99024 0.91960 0.94659 0.88490 0.91149 0.87775 0.96138 0.98929 0.92472 0.89681 0.85649 0.83660 0.92193 0.88254 0.92621 0.93077 0.74608 0.81668 0.85105 0.89742 0.90986 0.86705 0.89258 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 10.24 71.98 0.74 -2.99 16 2 C 0.10 2.84 5.93 86.38 0.51 3.35 16 3 N -0.60 -25.18 2.46 -826.17 -2.03 -27.21 16 4 C 0.26 14.37 5.16 85.63 0.44 14.81 16 5 C -0.54 -31.57 9.39 25.60 0.24 -31.33 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.33 5.46 84.65 0.46 0.79 16 8 N -0.93 -57.06 13.29 21.45 0.28 -56.78 16 9 Si 0.97 45.32 29.54 68.60 2.03 47.35 16 10 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 13 C 0.49 20.13 7.71 87.65 0.68 20.81 16 14 O -0.59 -31.22 15.78 -3.02 -0.05 -31.27 16 15 C 0.06 1.58 4.72 85.55 0.40 1.99 16 16 N -0.69 -18.25 6.13 -517.93 -3.17 -21.42 16 17 C 0.06 1.04 5.80 86.30 0.50 1.54 16 18 C 0.13 2.63 5.93 86.38 0.51 3.14 16 19 N -0.71 -11.81 5.47 -471.97 -2.58 -14.39 16 20 C 0.56 12.45 7.53 85.12 0.64 13.10 16 21 O -0.61 -19.36 15.92 -4.47 -0.07 -19.43 16 22 C -0.33 -5.02 5.70 -20.16 -0.11 -5.13 16 23 C 0.16 2.63 10.46 66.73 0.70 3.33 16 24 O -0.32 -4.23 10.48 -76.27 -0.80 -5.03 16 25 C 0.04 0.22 7.15 72.14 0.52 0.74 16 26 C -0.15 -0.60 6.23 30.83 0.19 -0.41 16 27 C -0.07 -0.51 5.08 29.83 0.15 -0.36 16 28 H 0.06 1.31 7.22 -2.39 -0.02 1.29 16 29 H 0.03 0.99 8.14 -2.39 -0.02 0.98 16 30 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 2.18 8.07 -2.39 -0.02 2.16 16 32 H 0.10 2.12 6.44 -2.39 -0.02 2.10 16 33 H 0.02 1.14 8.07 -2.39 -0.02 1.12 16 34 H -0.01 -0.48 7.42 -2.39 -0.02 -0.49 16 35 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 36 H 0.09 1.70 7.40 -2.39 -0.02 1.68 16 37 H 0.13 2.50 7.19 -2.39 -0.02 2.48 16 38 H 0.34 10.31 8.43 -89.70 -0.76 9.55 16 39 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.42 3.76 6.58 -92.71 -0.61 3.15 16 44 H 0.17 3.03 7.21 -2.91 -0.02 3.01 16 45 H 0.13 0.11 8.14 -2.39 -0.02 0.09 16 46 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 47 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 48 H 0.11 -0.12 8.14 -2.39 -0.02 -0.13 16 49 H 0.09 0.40 8.14 -2.38 -0.02 0.38 16 50 H 0.09 0.42 7.15 -2.39 -0.02 0.41 16 Total: -1.00 -87.12 409.74 -0.23 -87.36 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -0.41 Total: 17.44 kcal Atomic # 6 Polarization: 16.81 SS G_CDS: 6.57 Total: 23.38 kcal Atomic # 7 Polarization: -112.30 SS G_CDS: -7.50 Total: -119.80 kcal Atomic # 8 Polarization: -54.81 SS G_CDS: -0.92 Total: -55.72 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -87.12 -0.23 -87.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124656097.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.456 kcal (2) G-P(sol) polarization free energy of solvation -87.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds