Wall clock time and date at job start Tue Mar 31 2020 22:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50694 * 119.99847 * 2 1 4 4 O 1.42906 * 109.46857 * 134.99969 * 3 2 1 5 5 C 1.42898 * 113.99962 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47047 * 329.99117 * 5 4 3 7 7 C 1.52994 * 109.47458 * 89.99923 * 5 4 3 8 8 C 1.50704 * 109.47045 * 209.99614 * 5 4 3 9 9 O 1.21286 * 120.00105 * 343.05531 * 8 5 4 10 10 N 1.34773 * 120.00188 * 163.04892 * 8 5 4 11 11 C 1.47741 * 121.63075 * 355.28650 * 10 8 5 12 12 C 1.52995 * 108.85750 * 271.77972 * 11 10 8 13 13 C 1.50679 * 109.44011 * 305.07563 * 12 11 10 14 14 O 1.21277 * 120.23211 * 295.33788 * 13 12 11 15 15 N 1.35491 * 119.53378 * 115.31143 * 13 12 11 16 16 C 1.47123 * 118.10238 * 180.33164 * 15 13 12 17 17 C 1.53003 * 109.08114 * 100.16529 * 16 15 13 18 18 N 1.47770 * 108.79762 * 301.40040 * 17 16 15 19 19 C 1.36929 * 121.63957 * 277.45453 * 18 17 16 20 20 H 1.07997 * 120.00437 * 140.21236 * 19 18 17 21 21 C 1.38817 * 119.99767 * 320.21247 * 19 18 17 22 22 N 1.31624 * 120.00089 * 159.91722 * 21 19 18 23 23 Si 1.86804 * 120.00194 * 339.91916 * 21 19 18 24 24 H 1.48494 * 109.47355 * 95.25755 * 23 21 19 25 25 H 1.48495 * 109.47058 * 215.26124 * 23 21 19 26 26 H 1.48499 * 109.46620 * 335.25840 * 23 21 19 27 27 C 1.47754 * 116.72654 * 97.43315 * 18 17 16 28 28 C 1.47775 * 121.63535 * 175.31624 * 10 8 5 29 29 H 1.07996 * 119.99786 * 0.02562 * 1 2 3 30 30 H 1.07998 * 119.99769 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.99591 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47527 * 14.99724 * 3 2 1 33 33 H 1.08996 * 109.47484 * 254.99047 * 3 2 1 34 34 H 1.08997 * 109.47872 * 63.35014 * 7 5 4 35 35 H 1.09003 * 109.47397 * 183.35253 * 7 5 4 36 36 H 1.09002 * 109.46931 * 303.34855 * 7 5 4 37 37 H 1.08998 * 109.57560 * 31.59449 * 11 10 8 38 38 H 1.09005 * 109.57617 * 151.97047 * 11 10 8 39 39 H 1.09001 * 109.47373 * 65.06279 * 12 11 10 40 40 H 1.08994 * 109.47788 * 185.08238 * 12 11 10 41 41 H 0.97000 * 120.95077 * 0.35767 * 15 13 12 42 42 H 1.09004 * 109.53698 * 340.28454 * 16 15 13 43 43 H 1.09003 * 109.60258 * 220.09081 * 16 15 13 44 44 H 1.09006 * 109.58490 * 181.60414 * 17 16 15 45 45 H 1.09004 * 109.69483 * 61.26355 * 17 16 15 46 46 H 0.96993 * 120.00063 * 180.02562 * 22 21 19 47 47 H 1.09006 * 109.57604 * 105.89184 * 27 18 17 48 48 H 1.08999 * 109.58387 * 345.49995 * 27 18 17 49 49 H 1.08993 * 109.58116 * 169.78550 * 28 10 8 50 50 H 1.09004 * 109.57282 * 290.18522 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9077 2.4352 1.0330 6 1 3.9129 2.9319 0.0627 7 6 3.3030 3.3707 2.0817 8 6 5.3201 2.0861 1.4261 9 8 5.5639 1.0021 1.9124 10 7 6.3123 2.9784 1.2371 11 6 6.0756 4.2673 0.5549 12 6 6.2648 4.0720 -0.9507 13 6 7.6269 3.4834 -1.2129 14 8 8.6269 4.1156 -0.9461 15 7 7.7266 2.2428 -1.7482 16 6 9.0718 1.6959 -1.9842 17 6 9.4258 0.7318 -0.8500 18 7 9.3649 1.4628 0.4328 19 6 10.4118 2.2267 0.8745 20 1 10.2231 3.1745 1.3566 21 6 11.7159 1.7829 0.7027 22 7 12.7141 2.6396 0.7493 23 14 12.0540 -0.0300 0.4055 24 1 12.1580 -0.2813 -1.0544 25 1 13.3288 -0.4104 1.0652 26 1 10.9440 -0.8394 0.9693 27 6 8.1186 1.3293 1.2151 28 6 7.6903 2.7152 1.7014 29 1 -0.5399 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3855 2.1161 0.2659 33 1 2.4757 1.4867 -0.9925 34 1 3.3522 2.8976 3.0624 35 1 3.8631 4.3056 2.1008 36 1 2.2627 3.5757 1.8290 37 1 5.0586 4.6048 0.7544 38 1 6.7865 5.0092 0.9189 39 1 5.4979 3.3959 -1.3286 40 1 6.1815 5.0345 -1.4554 41 1 6.9336 1.7299 -1.9700 42 1 9.7967 2.5095 -2.0104 43 1 9.0882 1.1624 -2.9346 44 1 10.4329 0.3432 -1.0017 45 1 8.7142 -0.0939 -0.8342 46 1 13.6252 2.3296 0.6289 47 1 8.2934 0.6792 2.0725 48 1 7.3360 0.9049 0.5861 49 1 8.3634 3.4695 1.2940 50 1 7.7206 2.7457 2.7906 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131398743.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:44 Heat of formation + Delta-G solvation = -40.583111 kcal Electronic energy + Delta-G solvation = -32556.477770 eV Core-core repulsion = 28393.641263 eV Total energy + Delta-G solvation = -4162.836507 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.38691 -39.06822 -37.94033 -36.07455 -35.64138 -34.33702 -33.67346 -31.93640 -31.44397 -30.64042 -29.46117 -26.88353 -26.47718 -25.08620 -23.92597 -23.55855 -21.96890 -20.43556 -20.40714 -19.83011 -18.93041 -17.61167 -17.14388 -16.49954 -16.45012 -16.19730 -15.76829 -15.38144 -15.21100 -14.87200 -14.69203 -14.43699 -13.97926 -13.80965 -13.56458 -13.53399 -13.15906 -13.02092 -12.80361 -12.72363 -12.46058 -12.32905 -12.25108 -12.07765 -11.93432 -11.75745 -11.48116 -11.21296 -11.16064 -10.88261 -10.60848 -10.50727 -10.37058 -10.24464 -9.90097 -9.65622 -9.48888 -9.25892 -9.13885 -8.69042 -8.37294 -8.26553 -6.59187 -5.84000 -3.26665 1.80512 2.71420 2.83472 3.22796 3.37009 3.53893 3.61617 3.69063 3.78559 4.35794 4.53783 4.63854 4.69461 4.72730 4.79956 4.86206 4.96742 5.02991 5.06843 5.12154 5.13876 5.30236 5.39518 5.42434 5.48445 5.53884 5.58667 5.68404 5.85310 5.87275 6.01751 6.02741 6.13059 6.20054 6.24226 6.29991 6.39544 6.42852 6.52410 6.80086 6.83816 6.97829 7.02899 7.09687 7.63108 8.05091 8.16967 8.34681 8.53274 8.88175 9.06149 9.83061 10.30811 11.31778 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016043 B = 0.003676 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.944752 B = 7616.144411 C = 7955.991518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.147 4.147 3 C 0.085 3.915 4 O -0.352 6.352 5 C 0.071 3.929 6 H 0.080 0.920 7 C -0.170 4.170 8 C 0.516 3.484 9 O -0.511 6.511 10 N -0.611 5.611 11 C 0.112 3.888 12 C -0.161 4.161 13 C 0.514 3.486 14 O -0.505 6.505 15 N -0.724 5.724 16 C 0.092 3.908 17 C 0.117 3.883 18 N -0.600 5.600 19 C -0.238 4.238 20 H 0.079 0.921 21 C 0.033 3.967 22 N -0.903 5.903 23 Si 0.878 3.122 24 H -0.289 1.289 25 H -0.305 1.305 26 H -0.272 1.272 27 C 0.145 3.855 28 C 0.097 3.903 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.118 0.882 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.104 0.896 41 H 0.389 0.611 42 H 0.097 0.903 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.042 0.958 46 H 0.260 0.740 47 H 0.029 0.971 48 H 0.056 0.944 49 H 0.116 0.884 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.172 2.133 -5.334 24.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.165 4.165 3 C 0.009 3.991 4 O -0.270 6.270 5 C 0.009 3.991 6 H 0.098 0.902 7 C -0.228 4.228 8 C 0.301 3.699 9 O -0.385 6.385 10 N -0.347 5.347 11 C -0.012 4.012 12 C -0.203 4.203 13 C 0.298 3.702 14 O -0.378 6.378 15 N -0.376 5.376 16 C -0.034 4.034 17 C -0.010 4.010 18 N -0.325 5.325 19 C -0.367 4.367 20 H 0.096 0.904 21 C -0.166 4.166 22 N -0.545 5.545 23 Si 0.710 3.290 24 H -0.217 1.217 25 H -0.233 1.233 26 H -0.197 1.197 27 C 0.019 3.981 28 C -0.025 4.025 29 H 0.115 0.885 30 H 0.122 0.878 31 H 0.136 0.864 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.115 0.885 39 H 0.090 0.910 40 H 0.122 0.878 41 H 0.221 0.779 42 H 0.115 0.885 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.047 0.953 48 H 0.075 0.925 49 H 0.134 0.866 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.072 1.857 -4.707 23.620 hybrid contribution -0.175 -1.074 -0.573 1.229 sum -23.247 0.784 -5.279 23.852 Atomic orbital electron populations 1.23821 0.95494 1.02222 1.00434 1.22746 0.95586 0.98309 0.99841 1.21654 0.89091 0.96059 0.92325 1.88104 1.43825 1.35133 1.59962 1.21978 0.90126 0.87165 0.99807 0.90240 1.22240 1.01374 0.99081 1.00100 1.20101 0.85611 0.84562 0.79590 1.90742 1.83249 1.21739 1.42794 1.48837 1.10060 1.17742 1.58049 1.21858 1.02643 0.86522 0.90133 1.22234 0.96601 1.02982 0.98491 1.20263 0.90488 0.81957 0.77454 1.90829 1.37900 1.60140 1.48928 1.46069 1.08756 1.17210 1.65518 1.22190 0.84438 0.99734 0.97000 1.21847 0.98880 0.93152 0.87107 1.44669 1.14322 1.57224 1.16316 1.18528 0.83294 0.98779 1.36099 0.90355 1.25477 0.95743 0.96691 0.98731 1.69867 0.99172 1.33280 1.52160 0.86885 0.76706 0.88759 0.76666 1.21743 1.23290 1.19656 1.21392 0.88307 0.93235 0.95121 1.22777 0.79189 1.02061 0.98454 0.88490 0.87779 0.86369 0.92676 0.92229 0.90925 0.90674 0.91361 0.89895 0.88544 0.90959 0.87824 0.77855 0.88453 0.92843 0.93032 0.93908 0.93030 0.95306 0.92526 0.86580 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 14.31 29.01 0.42 -0.83 16 2 C -0.15 -1.27 9.89 -36.03 -0.36 -1.62 16 3 C 0.09 0.74 6.16 36.00 0.22 0.96 16 4 O -0.35 -4.39 9.56 -54.55 -0.52 -4.91 16 5 C 0.07 0.76 2.30 -27.88 -0.06 0.70 16 6 H 0.08 0.64 6.08 -51.93 -0.32 0.32 16 7 C -0.17 -1.47 9.30 37.15 0.35 -1.12 16 8 C 0.52 7.74 6.42 -10.99 -0.07 7.67 16 9 O -0.51 -10.03 14.74 -13.76 -0.20 -10.23 16 10 N -0.61 -8.86 2.44 -171.65 -0.42 -9.27 16 11 C 0.11 1.22 5.26 -3.36 -0.02 1.20 16 12 C -0.16 -1.73 6.13 -27.90 -0.17 -1.90 16 13 C 0.51 8.34 4.74 -10.67 -0.05 8.29 16 14 O -0.50 -10.86 14.91 5.56 0.08 -10.78 16 15 N -0.72 -11.17 4.77 -59.69 -0.28 -11.45 16 16 C 0.09 1.70 6.57 -3.70 -0.02 1.68 16 17 C 0.12 2.49 5.14 -3.34 -0.02 2.47 16 18 N -0.60 -14.22 1.80 -171.19 -0.31 -14.52 16 19 C -0.24 -6.63 9.05 -15.06 -0.14 -6.77 16 20 H 0.08 2.39 6.70 -52.49 -0.35 2.04 16 21 C 0.03 0.97 5.38 -17.43 -0.09 0.88 16 22 N -0.90 -28.07 13.97 55.49 0.78 -27.30 16 23 Si 0.88 22.83 25.02 -169.99 -4.25 18.58 16 24 H -0.29 -7.24 6.72 56.52 0.38 -6.86 16 25 H -0.30 -8.10 7.11 56.52 0.40 -7.70 16 26 H -0.27 -7.06 7.11 56.52 0.40 -6.66 16 27 C 0.15 3.11 4.53 -3.36 -0.02 3.10 16 28 C 0.10 1.84 4.94 -3.34 -0.02 1.82 16 29 H 0.10 0.54 7.90 -52.49 -0.41 0.12 16 30 H 0.10 0.60 8.06 -52.49 -0.42 0.17 16 31 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 32 H 0.06 0.38 7.53 -51.93 -0.39 -0.01 16 33 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.54 6.36 -51.93 -0.33 0.20 16 36 H 0.07 0.46 7.81 -51.93 -0.41 0.05 16 37 H 0.08 0.60 5.02 -51.93 -0.26 0.34 16 38 H 0.10 1.15 7.83 -51.93 -0.41 0.74 16 39 H 0.07 0.60 7.09 -51.93 -0.37 0.24 16 40 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.39 4.84 8.71 -40.82 -0.36 4.48 16 42 H 0.10 2.19 7.02 -51.93 -0.36 1.82 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.05 1.21 3.32 -51.93 -0.17 1.04 16 45 H 0.04 0.83 7.75 -51.93 -0.40 0.43 16 46 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 47 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.06 1.17 5.83 -51.93 -0.30 0.87 16 49 H 0.12 2.50 4.08 -51.93 -0.21 2.29 16 50 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 380.51 15.07 5.73 5.73 Total: -1.00 -36.50 380.51 -7.04 -43.53 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -7.59 Total: 4.09 kcal Atomic # 6 Polarization: 16.58 SS G_CDS: -0.05 Total: 16.53 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: -0.24 Total: -62.55 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.64 Total: -25.92 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.25 Total: 18.58 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.50 -7.04 -43.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131398743.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.949 kcal (2) G-P(sol) polarization free energy of solvation -36.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds