Wall clock time and date at job start Wed Apr 1 2020 00:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47220 * 2 1 4 4 C 1.36935 * 120.00288 * 275.24591 * 3 2 1 5 5 H 1.08005 * 119.99657 * 26.66266 * 4 3 2 6 6 C 1.38805 * 120.00417 * 206.67043 * 4 3 2 7 7 N 1.31622 * 119.99968 * 24.73643 * 6 4 3 8 8 Si 1.86807 * 120.00196 * 204.73792 * 6 4 3 9 9 H 1.48499 * 109.46739 * 84.99419 * 8 6 4 10 10 H 1.48498 * 109.47110 * 204.99307 * 8 6 4 11 11 H 1.48497 * 109.46847 * 324.99388 * 8 6 4 12 12 C 1.46503 * 119.99907 * 95.24973 * 3 2 1 13 13 H 1.09001 * 109.46747 * 179.97438 * 12 3 2 14 14 C 1.52997 * 109.47383 * 59.99784 * 12 3 2 15 15 C 1.53004 * 109.46976 * 299.99786 * 12 3 2 16 16 N 1.46498 * 109.47038 * 305.00206 * 15 12 3 17 17 C 1.34781 * 120.00347 * 180.02562 * 16 15 12 18 18 O 1.21287 * 119.99347 * 359.97438 * 17 16 15 19 19 C 1.50692 * 120.00282 * 180.02562 * 17 16 15 20 20 N 1.46498 * 109.47033 * 180.02562 * 19 17 16 21 21 C 1.33877 * 122.76766 * 90.02209 * 20 19 17 22 22 O 1.21225 * 125.39274 * 359.97438 * 21 20 19 23 23 C 1.51312 * 109.20741 * 180.02562 * 21 20 19 24 24 C 1.54223 * 103.55851 * 359.97438 * 23 21 20 25 25 C 1.53006 * 110.60358 * 118.51397 * 24 23 21 26 26 C 1.53000 * 110.60995 * 241.48176 * 24 23 21 27 27 C 1.33882 * 122.75841 * 269.73319 * 20 19 17 28 28 O 1.21223 * 125.40177 * 359.97438 * 27 20 19 29 29 H 1.09004 * 109.46906 * 59.99962 * 1 2 3 30 30 H 1.09002 * 109.47379 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47268 * 300.00337 * 1 2 3 32 32 H 1.09007 * 109.46894 * 240.00027 * 2 1 3 33 33 H 1.09004 * 109.46906 * 120.00038 * 2 1 3 34 34 H 0.97003 * 119.99624 * 180.02562 * 7 6 4 35 35 H 1.08997 * 109.47019 * 59.99556 * 14 12 3 36 36 H 1.08996 * 109.47521 * 180.02562 * 14 12 3 37 37 H 1.09000 * 109.46863 * 300.00443 * 14 12 3 38 38 H 1.09002 * 109.47197 * 65.00010 * 15 12 3 39 39 H 1.09001 * 109.46986 * 185.00501 * 15 12 3 40 40 H 0.97004 * 120.00336 * 359.97438 * 16 15 12 41 41 H 1.09002 * 109.46974 * 299.99672 * 19 17 16 42 42 H 1.08996 * 109.47320 * 59.99671 * 19 17 16 43 43 H 1.08997 * 110.60347 * 118.51990 * 23 21 20 44 44 H 1.09006 * 110.60353 * 241.32621 * 23 21 20 45 45 H 1.09002 * 109.46710 * 60.00314 * 25 24 23 46 46 H 1.09002 * 109.47323 * 179.97438 * 25 24 23 47 47 H 1.08993 * 109.47203 * 300.00080 * 25 24 23 48 48 H 1.08999 * 109.46564 * 60.00025 * 26 24 23 49 49 H 1.09001 * 109.47260 * 179.97438 * 26 24 23 50 50 H 1.08997 * 109.46985 * 300.00189 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1444 2.0629 -1.1809 5 1 1.5227 1.8013 -2.0244 6 6 3.0712 3.0900 -1.2939 7 7 4.1289 3.1111 -0.5108 8 14 2.8174 4.4423 -2.5575 9 1 1.9353 5.4924 -1.9880 10 1 4.1297 5.0384 -2.9149 11 1 2.1855 3.8709 -3.7738 12 6 2.3720 2.0331 1.2634 13 1 2.7124 3.0493 1.0650 14 6 3.4907 1.2454 1.9481 15 6 1.1450 2.0748 2.1766 16 7 0.0356 2.7246 1.4745 17 6 -1.1549 2.8748 2.0883 18 8 -1.3077 2.4715 3.2219 19 6 -2.2963 3.5427 1.3658 20 7 -3.4706 3.5838 2.2407 21 6 -3.7196 4.6034 3.0718 22 8 -3.0261 5.5892 3.2012 23 6 -5.0030 4.3296 3.8251 24 6 -5.4578 2.9609 3.2790 25 6 -5.5096 1.9232 4.4022 26 6 -6.8194 3.0808 2.5915 27 6 -4.3862 2.6075 2.2707 28 8 -4.3597 1.5990 1.5987 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 4.7764 3.8291 -0.5896 35 1 4.3648 1.2156 1.2975 36 1 3.7535 1.7302 2.8883 37 1 3.1507 0.2290 2.1464 38 1 0.8585 1.0585 2.4469 39 1 1.3830 2.6375 3.0794 40 1 0.1579 3.0475 0.5680 41 1 -2.0098 4.5588 1.0948 42 1 -2.5344 2.9794 0.4635 43 1 -4.8137 4.2717 4.8970 44 1 -5.7460 5.0973 3.6088 45 1 -6.2144 2.2502 5.1667 46 1 -5.8330 0.9645 3.9966 47 1 -4.5188 1.8157 4.8435 48 1 -6.7471 3.7852 1.7629 49 1 -7.1224 2.1046 2.2127 50 1 -7.5583 3.4379 3.3088 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153393362.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:08 Heat of formation + Delta-G solvation = -80.945984 kcal Electronic energy + Delta-G solvation = -31658.720924 eV Core-core repulsion = 27494.134152 eV Total energy + Delta-G solvation = -4164.586772 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.29200 -39.24109 -38.72528 -36.99900 -36.34101 -35.22863 -33.71089 -31.92880 -31.25891 -29.95993 -28.24205 -27.83860 -27.65504 -25.25163 -24.23077 -23.94843 -21.81108 -21.52061 -20.25817 -19.45188 -19.16448 -17.52912 -17.33447 -16.89025 -16.44288 -16.01593 -15.65313 -15.12760 -14.94065 -14.64630 -14.50581 -14.36415 -14.22456 -13.98931 -13.90944 -13.58407 -13.06888 -12.82351 -12.72455 -12.64033 -12.58682 -12.32795 -12.09197 -11.89127 -11.88623 -11.85039 -11.50864 -11.48399 -11.11279 -10.99314 -10.81082 -10.73702 -10.57446 -10.37190 -10.31141 -10.07690 -10.04360 -9.66933 -9.48686 -9.32831 -8.53711 -8.44412 -6.80900 -5.92284 -3.30547 1.40695 2.21496 2.59751 2.90165 3.30368 3.39443 3.40625 3.67840 3.72482 3.95278 4.05756 4.37182 4.41152 4.68691 4.97932 5.01201 5.07586 5.15770 5.18951 5.20017 5.23185 5.30820 5.33042 5.37799 5.41856 5.50745 5.69426 5.83646 5.85971 6.03751 6.15891 6.23357 6.35903 6.45616 6.52627 6.57912 6.65241 6.66524 6.80538 6.89120 6.97936 7.14698 7.18828 7.43752 7.51506 7.62538 7.75471 8.02551 8.35159 8.59085 9.11331 9.76091 10.30277 11.14732 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015129 B = 0.003304 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.289222 B = 8471.845134 C = 8931.806033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.263 4.263 5 H 0.068 0.932 6 C 0.008 3.992 7 N -0.886 5.886 8 Si 0.891 3.109 9 H -0.286 1.286 10 H -0.292 1.292 11 H -0.279 1.279 12 C 0.172 3.828 13 H 0.105 0.895 14 C -0.144 4.144 15 C 0.104 3.896 16 N -0.693 5.693 17 C 0.497 3.503 18 O -0.552 6.552 19 C 0.075 3.925 20 N -0.554 5.554 21 C 0.532 3.468 22 O -0.480 6.480 23 C -0.149 4.149 24 C -0.096 4.096 25 C -0.133 4.133 26 C -0.133 4.133 27 C 0.538 3.462 28 O -0.472 6.472 29 H 0.047 0.953 30 H 0.033 0.967 31 H 0.050 0.950 32 H 0.041 0.959 33 H 0.037 0.963 34 H 0.255 0.745 35 H 0.076 0.924 36 H 0.034 0.966 37 H 0.030 0.970 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.413 0.587 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.067 0.933 48 H 0.062 0.938 49 H 0.073 0.927 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.147 1.137 7.840 20.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.392 4.392 5 H 0.086 0.914 6 C -0.192 4.192 7 N -0.529 5.529 8 Si 0.721 3.279 9 H -0.213 1.213 10 H -0.218 1.218 11 H -0.205 1.205 12 C 0.065 3.935 13 H 0.123 0.877 14 C -0.203 4.203 15 C -0.021 4.021 16 N -0.344 5.344 17 C 0.280 3.720 18 O -0.431 6.431 19 C -0.050 4.050 20 N -0.296 5.296 21 C 0.321 3.679 22 O -0.351 6.351 23 C -0.189 4.189 24 C -0.099 4.099 25 C -0.191 4.191 26 C -0.190 4.190 27 C 0.326 3.674 28 O -0.342 6.342 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.250 0.750 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.094 0.906 46 H 0.091 0.909 47 H 0.086 0.914 48 H 0.081 0.919 49 H 0.092 0.908 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.647 0.928 8.298 20.431 hybrid contribution 0.258 0.855 -1.174 1.475 sum -18.389 1.783 7.124 19.801 Atomic orbital electron populations 1.22440 0.99810 0.99137 1.01516 1.20748 0.91809 0.87256 0.98768 1.43991 1.75774 1.08517 1.02242 1.19136 1.15145 1.13257 0.91693 0.91415 1.24948 0.94518 1.01414 0.98300 1.70098 1.09080 1.32240 1.41498 0.86482 0.77188 0.82791 0.81452 1.21328 1.21842 1.20472 1.20572 0.88920 0.99937 0.84120 0.87716 1.22005 1.01013 0.98075 0.99235 1.22187 0.88055 0.96253 0.95636 1.45875 1.10550 1.58818 1.19171 1.20500 0.84248 0.80143 0.87062 1.90658 1.83093 1.50885 1.18494 1.21638 0.84508 1.04901 0.93940 1.46295 1.22965 1.21614 1.38760 1.20765 0.87206 0.81371 0.78569 1.90785 1.52682 1.28099 1.63516 1.22692 0.95672 0.97669 1.02840 1.21463 0.95896 0.96443 0.96110 1.21762 1.03448 0.97769 0.96106 1.21773 0.93137 1.03558 1.00552 1.20717 0.82441 0.81722 0.82501 1.90762 1.75659 1.24564 1.43166 0.93396 0.94791 0.93060 0.94060 0.94513 0.93528 0.90537 0.94694 0.95056 0.92736 0.92855 0.75035 0.86011 0.85908 0.85947 0.86069 0.90613 0.90935 0.91408 0.91922 0.90828 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 9.85 37.16 0.37 -2.76 16 2 C 0.14 2.85 5.69 -4.04 -0.02 2.82 16 3 N -0.58 -13.06 1.88 -165.66 -0.31 -13.37 16 4 C -0.26 -6.48 9.28 -15.06 -0.14 -6.62 16 5 H 0.07 1.68 7.94 -52.48 -0.42 1.27 16 6 C 0.01 0.21 4.71 -17.43 -0.08 0.12 16 7 N -0.89 -23.47 10.91 55.49 0.61 -22.86 16 8 Si 0.89 20.13 29.62 -169.99 -5.04 15.09 16 9 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 12 C 0.17 3.69 1.97 -67.93 -0.13 3.55 16 13 H 0.11 2.55 5.76 -51.93 -0.30 2.25 16 14 C -0.14 -2.94 9.08 37.16 0.34 -2.61 16 15 C 0.10 2.03 4.33 -4.04 -0.02 2.01 16 16 N -0.69 -12.74 3.99 -60.29 -0.24 -12.98 16 17 C 0.50 8.94 7.66 -10.99 -0.08 8.86 16 18 O -0.55 -11.48 16.43 5.55 0.09 -11.39 16 19 C 0.07 1.08 6.04 -5.20 -0.03 1.05 16 20 N -0.55 -7.55 2.04 -116.63 -0.24 -7.79 16 21 C 0.53 6.81 8.08 -11.09 -0.09 6.72 16 22 O -0.48 -7.68 17.48 5.60 0.10 -7.58 16 23 C -0.15 -1.16 6.31 -26.94 -0.17 -1.33 16 24 C -0.10 -0.81 1.05 -154.71 -0.16 -0.97 16 25 C -0.13 -1.02 8.46 37.16 0.31 -0.71 16 26 C -0.13 -0.80 8.44 37.16 0.31 -0.48 16 27 C 0.54 6.99 6.74 -11.08 -0.07 6.91 16 28 O -0.47 -7.53 17.47 5.61 0.10 -7.43 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.98 4.95 -51.93 -0.26 0.73 16 32 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 33 H 0.04 0.72 6.44 -51.93 -0.33 0.39 16 34 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 35 H 0.08 1.77 7.69 -51.93 -0.40 1.37 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.03 0.59 6.66 -51.93 -0.35 0.25 16 38 H 0.05 1.10 7.01 -51.93 -0.36 0.73 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.41 7.64 7.89 -40.82 -0.32 7.32 16 41 H 0.12 1.58 7.83 -51.93 -0.41 1.17 16 42 H 0.12 1.62 7.82 -51.93 -0.41 1.21 16 43 H 0.12 0.80 7.74 -51.93 -0.40 0.40 16 44 H 0.12 0.61 7.75 -51.93 -0.40 0.21 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 402.13 15.07 6.06 6.06 Total: -1.00 -31.64 402.13 -6.69 -38.33 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -8.14 Total: 7.37 kcal Atomic # 6 Polarization: 16.24 SS G_CDS: 0.32 Total: 16.56 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.18 Total: -57.01 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: 0.29 Total: -26.40 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.04 Total: 15.09 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.64 -6.69 -38.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153393362.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.617 kcal (2) G-P(sol) polarization free energy of solvation -31.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds