Wall clock time and date at job start Wed Apr 1 2020 00:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47220 * 2 1 4 4 C 1.36935 * 120.00288 * 275.24591 * 3 2 1 5 5 H 1.08005 * 119.99657 * 26.66266 * 4 3 2 6 6 C 1.38805 * 120.00417 * 206.67043 * 4 3 2 7 7 N 1.31622 * 119.99968 * 24.73643 * 6 4 3 8 8 Si 1.86807 * 120.00196 * 204.73792 * 6 4 3 9 9 H 1.48499 * 109.46739 * 84.99419 * 8 6 4 10 10 H 1.48498 * 109.47110 * 204.99307 * 8 6 4 11 11 H 1.48497 * 109.46847 * 324.99388 * 8 6 4 12 12 C 1.46503 * 119.99907 * 95.24973 * 3 2 1 13 13 H 1.09001 * 109.46747 * 179.97438 * 12 3 2 14 14 C 1.52997 * 109.47383 * 59.99784 * 12 3 2 15 15 C 1.53004 * 109.46976 * 299.99786 * 12 3 2 16 16 N 1.46498 * 109.47038 * 305.00206 * 15 12 3 17 17 C 1.34781 * 120.00347 * 180.02562 * 16 15 12 18 18 O 1.21287 * 119.99347 * 359.97438 * 17 16 15 19 19 C 1.50692 * 120.00282 * 180.02562 * 17 16 15 20 20 N 1.46498 * 109.47033 * 180.02562 * 19 17 16 21 21 C 1.33877 * 122.76766 * 90.02209 * 20 19 17 22 22 O 1.21225 * 125.39274 * 359.97438 * 21 20 19 23 23 C 1.51312 * 109.20741 * 180.02562 * 21 20 19 24 24 C 1.54223 * 103.55851 * 359.97438 * 23 21 20 25 25 C 1.53006 * 110.60358 * 118.51397 * 24 23 21 26 26 C 1.53000 * 110.60995 * 241.48176 * 24 23 21 27 27 C 1.33882 * 122.75841 * 269.73319 * 20 19 17 28 28 O 1.21223 * 125.40177 * 359.97438 * 27 20 19 29 29 H 1.09004 * 109.46906 * 59.99962 * 1 2 3 30 30 H 1.09002 * 109.47379 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47268 * 300.00337 * 1 2 3 32 32 H 1.09007 * 109.46894 * 240.00027 * 2 1 3 33 33 H 1.09004 * 109.46906 * 120.00038 * 2 1 3 34 34 H 0.97003 * 119.99624 * 180.02562 * 7 6 4 35 35 H 1.08997 * 109.47019 * 59.99556 * 14 12 3 36 36 H 1.08996 * 109.47521 * 180.02562 * 14 12 3 37 37 H 1.09000 * 109.46863 * 300.00443 * 14 12 3 38 38 H 1.09002 * 109.47197 * 65.00010 * 15 12 3 39 39 H 1.09001 * 109.46986 * 185.00501 * 15 12 3 40 40 H 0.97004 * 120.00336 * 359.97438 * 16 15 12 41 41 H 1.09002 * 109.46974 * 299.99672 * 19 17 16 42 42 H 1.08996 * 109.47320 * 59.99671 * 19 17 16 43 43 H 1.08997 * 110.60347 * 118.51990 * 23 21 20 44 44 H 1.09006 * 110.60353 * 241.32621 * 23 21 20 45 45 H 1.09002 * 109.46710 * 60.00314 * 25 24 23 46 46 H 1.09002 * 109.47323 * 179.97438 * 25 24 23 47 47 H 1.08993 * 109.47203 * 300.00080 * 25 24 23 48 48 H 1.08999 * 109.46564 * 60.00025 * 26 24 23 49 49 H 1.09001 * 109.47260 * 179.97438 * 26 24 23 50 50 H 1.08997 * 109.46985 * 300.00189 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1444 2.0629 -1.1809 5 1 1.5227 1.8013 -2.0244 6 6 3.0712 3.0900 -1.2939 7 7 4.1289 3.1111 -0.5108 8 14 2.8174 4.4423 -2.5575 9 1 1.9353 5.4924 -1.9880 10 1 4.1297 5.0384 -2.9149 11 1 2.1855 3.8709 -3.7738 12 6 2.3720 2.0331 1.2634 13 1 2.7124 3.0493 1.0650 14 6 3.4907 1.2454 1.9481 15 6 1.1450 2.0748 2.1766 16 7 0.0356 2.7246 1.4745 17 6 -1.1549 2.8748 2.0883 18 8 -1.3077 2.4715 3.2219 19 6 -2.2963 3.5427 1.3658 20 7 -3.4706 3.5838 2.2407 21 6 -3.7196 4.6034 3.0718 22 8 -3.0261 5.5892 3.2012 23 6 -5.0030 4.3296 3.8251 24 6 -5.4578 2.9609 3.2790 25 6 -5.5096 1.9232 4.4022 26 6 -6.8194 3.0808 2.5915 27 6 -4.3862 2.6075 2.2707 28 8 -4.3597 1.5990 1.5987 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 4.7764 3.8291 -0.5896 35 1 4.3648 1.2156 1.2975 36 1 3.7535 1.7302 2.8883 37 1 3.1507 0.2290 2.1464 38 1 0.8585 1.0585 2.4469 39 1 1.3830 2.6375 3.0794 40 1 0.1579 3.0475 0.5680 41 1 -2.0098 4.5588 1.0948 42 1 -2.5344 2.9794 0.4635 43 1 -4.8137 4.2717 4.8970 44 1 -5.7460 5.0973 3.6088 45 1 -6.2144 2.2502 5.1667 46 1 -5.8330 0.9645 3.9966 47 1 -4.5188 1.8157 4.8435 48 1 -6.7471 3.7852 1.7629 49 1 -7.1224 2.1046 2.2127 50 1 -7.5583 3.4379 3.3088 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153393362.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:07 Heat of formation + Delta-G solvation = -100.402486 kcal Electronic energy + Delta-G solvation = -31659.564621 eV Core-core repulsion = 27494.134152 eV Total energy + Delta-G solvation = -4165.430470 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.25656 -40.71521 -39.79213 -38.68254 -37.28264 -36.20477 -35.33327 -33.77798 -32.87187 -31.00054 -29.97032 -28.65683 -28.34124 -26.68806 -25.81088 -25.21332 -23.42017 -22.53362 -21.53037 -21.06299 -20.29313 -18.99132 -18.51849 -18.40478 -17.43448 -17.18363 -17.05122 -16.56665 -16.45831 -16.03055 -15.86609 -15.41981 -15.32670 -15.28403 -14.82164 -14.66315 -14.40912 -14.35993 -14.10733 -14.00865 -13.60003 -13.47383 -13.39255 -13.12700 -13.10006 -12.83741 -12.76741 -12.63098 -12.55705 -12.53017 -12.44126 -12.08433 -12.06404 -11.84516 -11.70714 -11.42498 -11.41445 -11.23016 -11.04565 -10.70284 -10.40905 -10.04262 -8.67263 -7.85894 -5.25269 0.42812 1.20564 1.45950 1.49233 1.54041 1.59084 1.63667 2.32605 2.54463 2.97188 3.13818 3.26333 3.38096 3.57542 3.66663 3.81014 3.89072 4.05406 4.07892 4.16379 4.23353 4.40821 4.50757 4.57049 4.61685 4.64805 4.75122 4.78071 4.80318 4.82433 4.88222 4.90779 4.92265 5.01241 5.01596 5.17665 5.22732 5.27467 5.31318 5.40030 5.53771 5.65839 5.68821 5.73119 5.81727 6.22654 6.42333 6.49471 6.65499 7.10082 7.20162 7.90813 8.40867 9.18926 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015129 B = 0.003304 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.289222 B = 8471.845134 C = 8931.806033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.140 3.860 3 N -0.592 5.592 4 C -0.262 4.262 5 H 0.065 0.935 6 C -0.033 4.033 7 N -0.912 5.912 8 Si 0.946 3.054 9 H -0.282 1.282 10 H -0.304 1.304 11 H -0.275 1.275 12 C 0.178 3.822 13 H 0.077 0.923 14 C -0.135 4.135 15 C 0.118 3.882 16 N -0.693 5.693 17 C 0.495 3.505 18 O -0.582 6.582 19 C 0.075 3.925 20 N -0.562 5.562 21 C 0.523 3.477 22 O -0.519 6.519 23 C -0.134 4.134 24 C -0.086 4.086 25 C -0.132 4.132 26 C -0.130 4.130 27 C 0.528 3.472 28 O -0.510 6.510 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.042 0.958 32 H 0.034 0.966 33 H 0.044 0.956 34 H 0.249 0.751 35 H 0.047 0.953 36 H 0.050 0.950 37 H 0.043 0.957 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.413 0.587 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.142 0.858 44 H 0.160 0.840 45 H 0.113 0.887 46 H 0.065 0.935 47 H 0.044 0.956 48 H 0.064 0.936 49 H 0.065 0.935 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.051 1.550 8.626 23.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.014 3.986 3 N -0.313 5.313 4 C -0.391 4.391 5 H 0.083 0.917 6 C -0.230 4.230 7 N -0.556 5.556 8 Si 0.776 3.224 9 H -0.209 1.209 10 H -0.231 1.231 11 H -0.200 1.200 12 C 0.071 3.929 13 H 0.095 0.905 14 C -0.194 4.194 15 C -0.008 4.008 16 N -0.343 5.343 17 C 0.281 3.719 18 O -0.463 6.463 19 C -0.051 4.051 20 N -0.304 5.304 21 C 0.315 3.685 22 O -0.393 6.393 23 C -0.173 4.173 24 C -0.089 4.089 25 C -0.190 4.190 26 C -0.187 4.187 27 C 0.319 3.681 28 O -0.383 6.383 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.249 0.751 41 H 0.153 0.847 42 H 0.151 0.849 43 H 0.160 0.840 44 H 0.177 0.823 45 H 0.132 0.868 46 H 0.084 0.916 47 H 0.063 0.937 48 H 0.083 0.917 49 H 0.084 0.916 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -21.590 1.329 9.084 23.461 hybrid contribution 1.181 0.653 -1.417 1.957 sum -20.408 1.982 7.667 21.891 Atomic orbital electron populations 1.22255 0.98176 1.00178 1.00787 1.20815 0.92885 0.86120 0.98736 1.44107 1.75872 1.09379 1.01991 1.19284 1.14357 1.13256 0.92252 0.91722 1.25488 0.94466 1.03022 1.00050 1.70218 1.09758 1.32489 1.43129 0.85612 0.76314 0.80649 0.79837 1.20905 1.23076 1.19968 1.20421 0.89834 0.98461 0.84203 0.90525 1.21873 0.99481 0.98891 0.99187 1.21908 0.87662 0.96159 0.95089 1.45848 1.10638 1.58754 1.19042 1.21066 0.84628 0.79463 0.86752 1.90632 1.83610 1.52190 1.19872 1.21622 0.84001 1.05272 0.94170 1.46601 1.22583 1.22360 1.38849 1.21702 0.88357 0.80306 0.78094 1.90763 1.54368 1.29504 1.64660 1.22856 0.93465 0.98035 1.02960 1.21594 0.95517 0.96830 0.95002 1.21809 1.03127 0.97481 0.96543 1.21829 0.92035 1.03462 1.01349 1.21690 0.83042 0.80804 0.82586 1.90730 1.76659 1.25983 1.44895 0.93858 0.92860 0.93927 0.94767 0.93811 0.94215 0.93399 0.93076 0.93797 0.93062 0.92944 0.75068 0.84728 0.84852 0.84006 0.82280 0.86837 0.91620 0.93673 0.91719 0.91616 0.87050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.56 9.85 71.98 0.71 -4.85 16 2 C 0.14 5.60 5.69 86.38 0.49 6.09 16 3 N -0.59 -26.57 1.88 -678.03 -1.27 -27.84 16 4 C -0.26 -12.94 9.28 84.03 0.78 -12.16 16 5 H 0.07 3.20 7.94 -2.91 -0.02 3.18 16 6 C -0.03 -1.67 4.71 84.86 0.40 -1.27 16 7 N -0.91 -49.21 10.91 21.65 0.24 -48.97 16 8 Si 0.95 41.76 29.62 68.60 2.03 43.79 16 9 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 10 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 12 C 0.18 7.71 1.97 44.99 0.09 7.80 16 13 H 0.08 3.81 5.76 -2.39 -0.01 3.80 16 14 C -0.13 -5.54 9.08 71.98 0.65 -4.89 16 15 C 0.12 4.61 4.33 86.38 0.37 4.98 16 16 N -0.69 -25.61 3.99 -463.05 -1.85 -27.46 16 17 C 0.50 17.93 7.66 87.65 0.67 18.60 16 18 O -0.58 -24.38 16.43 -3.05 -0.05 -24.43 16 19 C 0.07 2.15 6.04 85.63 0.52 2.67 16 20 N -0.56 -14.94 2.04 -760.74 -1.55 -16.49 16 21 C 0.52 12.69 8.08 87.99 0.71 13.40 16 22 O -0.52 -16.30 17.48 -2.86 -0.05 -16.35 16 23 C -0.13 -1.64 6.31 30.46 0.19 -1.44 16 24 C -0.09 -1.23 1.05 -52.31 -0.06 -1.28 16 25 C -0.13 -1.70 8.46 71.98 0.61 -1.09 16 26 C -0.13 -1.09 8.44 71.98 0.61 -0.49 16 27 C 0.53 13.25 6.74 87.99 0.59 13.85 16 28 O -0.51 -16.27 17.47 -2.85 -0.05 -16.32 16 29 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.04 1.60 4.95 -2.39 -0.01 1.59 16 32 H 0.03 1.41 8.08 -2.38 -0.02 1.39 16 33 H 0.04 1.68 6.44 -2.39 -0.02 1.66 16 34 H 0.25 13.29 8.31 -92.71 -0.77 12.52 16 35 H 0.05 2.23 7.69 -2.39 -0.02 2.22 16 36 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.04 1.65 6.66 -2.39 -0.02 1.63 16 38 H 0.05 2.05 7.01 -2.39 -0.02 2.03 16 39 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.41 15.38 7.89 -92.71 -0.73 14.65 16 41 H 0.13 3.48 7.83 -2.39 -0.02 3.46 16 42 H 0.13 3.51 7.82 -2.39 -0.02 3.49 16 43 H 0.14 1.28 7.74 -2.39 -0.02 1.26 16 44 H 0.16 0.80 7.75 -2.38 -0.02 0.78 16 45 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 47 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 Total: -1.00 -70.41 402.13 5.00 -65.42 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 0.22 Total: 28.73 kcal Atomic # 6 Polarization: 32.57 SS G_CDS: 7.34 Total: 39.92 kcal Atomic # 7 Polarization: -116.32 SS G_CDS: -4.44 Total: -120.76 kcal Atomic # 8 Polarization: -56.95 SS G_CDS: -0.15 Total: -57.10 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -70.41 5.00 -65.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153393362.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.987 kcal (2) G-P(sol) polarization free energy of solvation -70.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds