Wall clock time and date at job start Wed Apr 1 2020 00:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46896 * 109.46843 * 2 1 4 4 C 1.46904 * 110.99827 * 164.67195 * 3 2 1 5 5 C 1.50709 * 109.46780 * 293.95366 * 4 3 2 6 6 O 1.21293 * 119.99575 * 359.97438 * 5 4 3 7 7 N 1.34774 * 119.99899 * 180.02562 * 5 4 3 8 8 C 1.37097 * 119.99922 * 179.97438 * 7 5 4 9 9 H 1.07996 * 119.99843 * 359.97438 * 8 7 5 10 10 C 1.38950 * 120.00035 * 179.97438 * 8 7 5 11 11 N 1.31413 * 119.99871 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99877 * 359.97438 * 10 8 7 13 13 H 1.48495 * 109.47118 * 90.00035 * 12 10 8 14 14 H 1.48501 * 109.46933 * 210.00163 * 12 10 8 15 15 H 1.48497 * 109.47298 * 329.99921 * 12 10 8 16 16 C 1.46903 * 110.99953 * 288.61973 * 3 2 1 17 17 H 1.08997 * 109.47326 * 49.62311 * 16 3 2 18 18 C 1.53001 * 109.47154 * 289.61941 * 16 3 2 19 19 C 1.53001 * 109.46769 * 169.62241 * 16 3 2 20 20 N 1.46494 * 109.47523 * 304.05050 * 19 16 3 21 21 C 1.34770 * 120.00419 * 183.48034 * 20 19 16 22 22 O 1.21279 * 120.00033 * 359.97438 * 21 20 19 23 23 C 1.50705 * 120.00130 * 180.02562 * 21 20 19 24 24 H 1.08999 * 115.50897 * 325.57802 * 23 21 20 25 25 C 1.53000 * 117.43262 * 110.95291 * 23 21 20 26 26 H 1.09000 * 119.80891 * 355.36281 * 25 23 21 27 27 C 1.54536 * 118.02705 * 198.16889 * 25 23 21 28 28 O 1.44428 * 104.72814 * 273.04084 * 27 25 23 29 29 C 1.44427 * 105.27638 * 40.52672 * 28 27 25 30 30 C 1.53007 * 117.43089 * 180.21175 * 23 21 20 31 31 H 1.09001 * 119.80816 * 5.64464 * 30 23 21 32 32 H 1.09002 * 109.47508 * 185.74652 * 1 2 3 33 33 H 1.09003 * 109.47290 * 305.74618 * 1 2 3 34 34 H 1.08997 * 109.47367 * 65.74776 * 1 2 3 35 35 H 1.08997 * 109.46994 * 120.00154 * 2 1 3 36 36 H 1.09001 * 109.46636 * 240.00458 * 2 1 3 37 37 H 1.08995 * 109.47127 * 53.95187 * 4 3 2 38 38 H 1.09000 * 109.47338 * 173.95716 * 4 3 2 39 39 H 0.97001 * 119.99959 * 359.97438 * 7 5 4 40 40 H 0.96995 * 119.99583 * 179.97438 * 11 10 8 41 41 H 1.09000 * 109.46724 * 179.97438 * 18 16 3 42 42 H 1.08994 * 109.47708 * 300.00094 * 18 16 3 43 43 H 1.09002 * 109.46912 * 60.00621 * 18 16 3 44 44 H 1.09001 * 109.47407 * 64.05312 * 19 16 3 45 45 H 1.09006 * 109.46829 * 184.04944 * 19 16 3 46 46 H 0.97004 * 119.99885 * 3.47255 * 20 19 16 47 47 H 1.08998 * 110.39683 * 154.24263 * 27 25 23 48 48 H 1.09001 * 110.51950 * 31.89994 * 27 25 23 49 49 H 1.08998 * 110.37572 * 200.65325 * 29 28 27 50 50 H 1.09006 * 110.37030 * 78.31956 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4421 1.4405 0.3625 5 6 3.6133 0.9996 1.7935 6 8 2.6454 0.6719 2.4470 7 7 4.8417 0.9704 2.3473 8 6 4.9974 0.5699 3.6491 9 1 4.1356 0.2781 4.2310 10 6 6.2639 0.5393 4.2199 11 7 6.4130 0.1558 5.4679 12 14 7.7544 1.0432 3.2131 13 1 7.9895 2.5008 3.3722 14 1 8.9469 0.2950 3.6857 15 1 7.5119 0.7344 1.7810 16 6 1.7822 2.0273 -1.2997 17 1 0.7451 1.8728 -1.5973 18 6 2.7108 1.4132 -2.3492 19 6 2.0622 3.5271 -1.1860 20 7 1.2421 4.0972 -0.1143 21 6 1.2698 5.4236 0.1226 22 8 1.9741 6.1454 -0.5512 23 6 0.4265 6.0100 1.2254 24 1 -0.5362 5.5255 1.3883 25 6 1.1551 6.5609 2.4528 26 1 2.2363 6.4503 2.5361 27 6 0.3401 6.7661 3.7497 28 8 -0.2235 8.0899 3.6236 29 6 -0.6340 8.1988 2.2431 30 6 0.4994 7.5232 1.4399 31 1 1.0717 8.1415 0.7483 32 1 -0.3634 -1.0225 0.1029 33 1 -0.3634 0.6004 0.8341 34 1 -0.3634 0.4221 -0.9369 35 1 1.8933 -0.5138 0.8899 36 1 1.8932 -0.5138 -0.8901 37 1 4.0099 0.7790 -0.2918 38 1 3.8059 2.4619 0.2511 39 1 5.6156 1.2328 1.8247 40 1 7.2971 0.1341 5.8662 41 1 2.5343 1.8895 -3.3136 42 1 3.7479 1.5677 -2.0517 43 1 2.5113 0.3447 -2.4302 44 1 3.1167 3.6837 -0.9589 45 1 1.8174 4.0150 -2.1295 46 1 0.6789 3.5200 0.4248 47 1 0.9929 6.7131 4.6210 48 1 -0.4527 6.0218 3.8245 49 1 -0.7295 9.2462 1.9571 50 1 -1.5762 7.6739 2.0849 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154751020.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:41 Heat of formation + Delta-G solvation = -68.717688 kcal Electronic energy + Delta-G solvation = -30659.063247 eV Core-core repulsion = 26495.006733 eV Total energy + Delta-G solvation = -4164.056514 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.86889 -39.67786 -38.80018 -37.48781 -34.81935 -34.48522 -33.90351 -31.87273 -31.64090 -30.22845 -28.92422 -27.47552 -26.62848 -25.46255 -24.10430 -22.78725 -22.06648 -20.85286 -20.31428 -19.94223 -19.15832 -18.21667 -17.68697 -16.74113 -16.36815 -16.12429 -15.71606 -15.31204 -15.28022 -15.05602 -14.85451 -14.58335 -14.45136 -14.07772 -13.86332 -13.27465 -13.20520 -13.13942 -12.92743 -12.83702 -12.61917 -12.53597 -12.20437 -11.98564 -11.95055 -11.90261 -11.75932 -11.44992 -11.33104 -11.23579 -10.83739 -10.61406 -10.60256 -10.49063 -10.45769 -10.00372 -9.91860 -9.85870 -9.54941 -9.05369 -8.59740 -8.20555 -8.04639 -6.33782 -3.85075 2.33220 2.96978 3.00260 3.05415 3.13639 3.43931 3.69854 3.79525 3.82648 4.08064 4.30378 4.35730 4.53620 4.63394 4.68492 4.74964 4.85765 4.90589 4.97933 5.08988 5.12944 5.17812 5.26747 5.31396 5.38513 5.41756 5.42803 5.52405 5.57743 5.58979 5.66997 5.70949 5.75682 5.77450 5.84992 5.86839 5.91120 6.01778 6.03305 6.36052 6.40857 6.43707 6.47505 7.11028 7.22379 7.53969 7.55604 8.11613 8.19764 8.57263 8.92515 9.39965 9.80309 10.79274 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007866 B = 0.003690 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3558.574266 B = 7587.181356 C = 9574.778238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.045 3.955 3 N -0.507 5.507 4 C 0.037 3.963 5 C 0.453 3.547 6 O -0.559 6.559 7 N -0.591 5.591 8 C -0.304 4.304 9 H 0.120 0.880 10 C 0.043 3.957 11 N -0.881 5.881 12 Si 0.878 3.122 13 H -0.270 1.270 14 H -0.276 1.276 15 H -0.270 1.270 16 C 0.063 3.937 17 H 0.093 0.907 18 C -0.186 4.186 19 C 0.129 3.871 20 N -0.706 5.706 21 C 0.543 3.457 22 O -0.548 6.548 23 C -0.148 4.148 24 H 0.123 0.877 25 C -0.160 4.160 26 H 0.129 0.871 27 C 0.073 3.927 28 O -0.372 6.372 29 C 0.073 3.927 30 C -0.164 4.164 31 H 0.134 0.866 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.043 0.957 35 H 0.099 0.901 36 H 0.027 0.973 37 H 0.052 0.948 38 H 0.088 0.912 39 H 0.369 0.631 40 H 0.273 0.727 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.071 0.929 46 H 0.413 0.587 47 H 0.104 0.896 48 H 0.068 0.932 49 H 0.100 0.900 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.854 8.510 -14.262 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.082 4.082 3 N -0.231 5.231 4 C -0.094 4.094 5 C 0.239 3.761 6 O -0.440 6.440 7 N -0.230 5.230 8 C -0.433 4.433 9 H 0.137 0.863 10 C -0.160 4.160 11 N -0.521 5.521 12 Si 0.704 3.296 13 H -0.196 1.196 14 H -0.202 1.202 15 H -0.196 1.196 16 C -0.046 4.046 17 H 0.111 0.889 18 C -0.245 4.245 19 C 0.005 3.995 20 N -0.357 5.357 21 C 0.329 3.671 22 O -0.426 6.426 23 C -0.169 4.169 24 H 0.141 0.859 25 C -0.179 4.179 26 H 0.147 0.853 27 C -0.003 4.003 28 O -0.291 6.291 29 C -0.003 4.003 30 C -0.182 4.182 31 H 0.151 0.849 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.118 0.882 36 H 0.045 0.955 37 H 0.069 0.931 38 H 0.107 0.893 39 H 0.202 0.798 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.249 0.751 47 H 0.123 0.877 48 H 0.086 0.914 49 H 0.118 0.882 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.153 9.163 -13.568 20.390 hybrid contribution 1.759 -0.676 -1.298 2.289 sum -10.394 8.487 -14.866 20.027 Atomic orbital electron populations 1.21708 0.95297 1.01413 1.01357 1.22251 0.95841 0.88290 1.01813 1.61836 1.16347 1.18492 1.26407 1.21951 0.89519 1.01871 0.96068 1.19615 0.83761 0.84556 0.88207 1.90535 1.38442 1.51817 1.63252 1.42224 1.06694 1.60896 1.13225 1.19405 0.96314 1.41502 0.86057 0.86263 1.25022 0.97617 0.97549 0.95847 1.69617 1.23953 1.46479 1.12027 0.86705 0.83370 0.79548 0.79964 1.19589 1.20170 1.19588 1.22053 1.00585 0.92918 0.89087 0.88919 1.22401 1.00796 1.01769 0.99570 1.21417 0.95665 0.92000 0.90456 1.45722 1.46633 1.07220 1.36136 1.19445 0.81809 0.82255 0.83610 1.90688 1.41904 1.60176 1.49835 1.22355 1.01202 0.96521 0.96859 0.85875 1.24157 1.00885 1.03337 0.89517 0.85299 1.22992 0.96162 0.84710 0.96478 1.89197 1.80174 1.32892 1.26835 1.22941 0.95074 1.01488 0.80832 1.24151 1.01207 0.90553 1.02321 0.84862 0.92703 0.91557 0.93824 0.88236 0.95503 0.93051 0.89343 0.79816 0.91609 0.91827 0.91801 0.91688 0.91560 0.91057 0.75062 0.87747 0.91364 0.88217 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.85 37.16 0.37 -1.24 16 2 C 0.05 0.62 5.16 -3.83 -0.02 0.60 16 3 N -0.51 -6.80 3.59 -228.08 -0.82 -7.62 16 4 C 0.04 0.58 4.38 -4.97 -0.02 0.56 16 5 C 0.45 9.68 7.35 -10.98 -0.08 9.60 16 6 O -0.56 -13.81 14.05 5.55 0.08 -13.73 16 7 N -0.59 -13.65 5.09 -10.96 -0.06 -13.71 16 8 C -0.30 -8.38 10.16 -14.93 -0.15 -8.54 16 9 H 0.12 3.75 7.39 -52.49 -0.39 3.37 16 10 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 11 N -0.88 -25.41 13.96 55.50 0.77 -24.64 16 12 Si 0.88 19.26 27.74 -169.99 -4.71 14.54 16 13 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 14 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 15 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 16 C 0.06 0.64 2.37 -67.71 -0.16 0.48 16 17 H 0.09 0.86 6.46 -51.93 -0.34 0.52 16 18 C -0.19 -1.69 8.47 37.16 0.31 -1.38 16 19 C 0.13 1.44 4.89 -4.04 -0.02 1.42 16 20 N -0.71 -8.30 5.41 -60.29 -0.33 -8.62 16 21 C 0.54 7.13 7.61 -10.99 -0.08 7.05 16 22 O -0.55 -8.95 16.34 5.56 0.09 -8.86 16 23 C -0.15 -1.60 5.74 -91.77 -0.53 -2.13 16 24 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 25 C -0.16 -1.83 6.91 -89.11 -0.62 -2.44 16 26 H 0.13 1.62 8.14 -51.93 -0.42 1.19 16 27 C 0.07 0.77 7.44 37.96 0.28 1.05 16 28 O -0.37 -4.33 11.65 -35.23 -0.41 -4.74 16 29 C 0.07 0.67 7.44 37.93 0.28 0.95 16 30 C -0.16 -1.73 6.64 -89.14 -0.59 -2.32 16 31 H 0.13 1.51 7.82 -51.93 -0.41 1.11 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.04 0.42 6.79 -51.93 -0.35 0.06 16 35 H 0.10 1.76 5.80 -51.93 -0.30 1.46 16 36 H 0.03 0.33 6.28 -51.93 -0.33 0.00 16 37 H 0.05 0.72 6.82 -51.93 -0.35 0.37 16 38 H 0.09 1.30 6.18 -51.93 -0.32 0.98 16 39 H 0.37 7.62 5.76 -40.82 -0.24 7.39 16 40 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.61 6.55 -51.93 -0.34 0.27 16 43 H 0.06 0.60 6.51 -51.93 -0.34 0.26 16 44 H 0.07 0.83 6.56 -51.93 -0.34 0.49 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.41 4.65 8.12 -40.82 -0.33 4.32 16 47 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 395.24 15.07 5.96 5.96 Total: -1.00 -32.97 395.24 -8.32 -41.29 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: -7.77 Total: 15.41 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -1.12 Total: 4.72 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -0.43 Total: -54.59 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.24 Total: -27.33 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.71 Total: 14.54 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.97 -8.32 -41.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154751020.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.431 kcal (2) G-P(sol) polarization free energy of solvation -32.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds