Wall clock time and date at job start Wed Apr 1 2020 00:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46896 * 109.46843 * 2 1 4 4 C 1.46904 * 110.99827 * 164.67195 * 3 2 1 5 5 C 1.50709 * 109.46780 * 293.95366 * 4 3 2 6 6 O 1.21293 * 119.99575 * 359.97438 * 5 4 3 7 7 N 1.34774 * 119.99899 * 180.02562 * 5 4 3 8 8 C 1.37097 * 119.99922 * 179.97438 * 7 5 4 9 9 H 1.07996 * 119.99843 * 359.97438 * 8 7 5 10 10 C 1.38950 * 120.00035 * 179.97438 * 8 7 5 11 11 N 1.31413 * 119.99871 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99877 * 359.97438 * 10 8 7 13 13 H 1.48495 * 109.47118 * 90.00035 * 12 10 8 14 14 H 1.48501 * 109.46933 * 210.00163 * 12 10 8 15 15 H 1.48497 * 109.47298 * 329.99921 * 12 10 8 16 16 C 1.46903 * 110.99953 * 288.61973 * 3 2 1 17 17 H 1.08997 * 109.47326 * 49.62311 * 16 3 2 18 18 C 1.53001 * 109.47154 * 289.61941 * 16 3 2 19 19 C 1.53001 * 109.46769 * 169.62241 * 16 3 2 20 20 N 1.46494 * 109.47523 * 304.05050 * 19 16 3 21 21 C 1.34770 * 120.00419 * 183.48034 * 20 19 16 22 22 O 1.21279 * 120.00033 * 359.97438 * 21 20 19 23 23 C 1.50705 * 120.00130 * 180.02562 * 21 20 19 24 24 H 1.08999 * 115.50897 * 325.57802 * 23 21 20 25 25 C 1.53000 * 117.43262 * 110.95291 * 23 21 20 26 26 H 1.09000 * 119.80891 * 355.36281 * 25 23 21 27 27 C 1.54536 * 118.02705 * 198.16889 * 25 23 21 28 28 O 1.44428 * 104.72814 * 273.04084 * 27 25 23 29 29 C 1.44427 * 105.27638 * 40.52672 * 28 27 25 30 30 C 1.53007 * 117.43089 * 180.21175 * 23 21 20 31 31 H 1.09001 * 119.80816 * 5.64464 * 30 23 21 32 32 H 1.09002 * 109.47508 * 185.74652 * 1 2 3 33 33 H 1.09003 * 109.47290 * 305.74618 * 1 2 3 34 34 H 1.08997 * 109.47367 * 65.74776 * 1 2 3 35 35 H 1.08997 * 109.46994 * 120.00154 * 2 1 3 36 36 H 1.09001 * 109.46636 * 240.00458 * 2 1 3 37 37 H 1.08995 * 109.47127 * 53.95187 * 4 3 2 38 38 H 1.09000 * 109.47338 * 173.95716 * 4 3 2 39 39 H 0.97001 * 119.99959 * 359.97438 * 7 5 4 40 40 H 0.96995 * 119.99583 * 179.97438 * 11 10 8 41 41 H 1.09000 * 109.46724 * 179.97438 * 18 16 3 42 42 H 1.08994 * 109.47708 * 300.00094 * 18 16 3 43 43 H 1.09002 * 109.46912 * 60.00621 * 18 16 3 44 44 H 1.09001 * 109.47407 * 64.05312 * 19 16 3 45 45 H 1.09006 * 109.46829 * 184.04944 * 19 16 3 46 46 H 0.97004 * 119.99885 * 3.47255 * 20 19 16 47 47 H 1.08998 * 110.39683 * 154.24263 * 27 25 23 48 48 H 1.09001 * 110.51950 * 31.89994 * 27 25 23 49 49 H 1.08998 * 110.37572 * 200.65325 * 29 28 27 50 50 H 1.09006 * 110.37030 * 78.31956 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4421 1.4405 0.3625 5 6 3.6133 0.9996 1.7935 6 8 2.6454 0.6719 2.4470 7 7 4.8417 0.9704 2.3473 8 6 4.9974 0.5699 3.6491 9 1 4.1356 0.2781 4.2310 10 6 6.2639 0.5393 4.2199 11 7 6.4130 0.1558 5.4679 12 14 7.7544 1.0432 3.2131 13 1 7.9895 2.5008 3.3722 14 1 8.9469 0.2950 3.6857 15 1 7.5119 0.7344 1.7810 16 6 1.7822 2.0273 -1.2997 17 1 0.7451 1.8728 -1.5973 18 6 2.7108 1.4132 -2.3492 19 6 2.0622 3.5271 -1.1860 20 7 1.2421 4.0972 -0.1143 21 6 1.2698 5.4236 0.1226 22 8 1.9741 6.1454 -0.5512 23 6 0.4265 6.0100 1.2254 24 1 -0.5362 5.5255 1.3883 25 6 1.1551 6.5609 2.4528 26 1 2.2363 6.4503 2.5361 27 6 0.3401 6.7661 3.7497 28 8 -0.2235 8.0899 3.6236 29 6 -0.6340 8.1988 2.2431 30 6 0.4994 7.5232 1.4399 31 1 1.0717 8.1415 0.7483 32 1 -0.3634 -1.0225 0.1029 33 1 -0.3634 0.6004 0.8341 34 1 -0.3634 0.4221 -0.9369 35 1 1.8933 -0.5138 0.8899 36 1 1.8932 -0.5138 -0.8901 37 1 4.0099 0.7790 -0.2918 38 1 3.8059 2.4619 0.2511 39 1 5.6156 1.2328 1.8247 40 1 7.2971 0.1341 5.8662 41 1 2.5343 1.8895 -3.3136 42 1 3.7479 1.5677 -2.0517 43 1 2.5113 0.3447 -2.4302 44 1 3.1167 3.6837 -0.9589 45 1 1.8174 4.0150 -2.1295 46 1 0.6789 3.5200 0.4248 47 1 0.9929 6.7131 4.6210 48 1 -0.4527 6.0218 3.8245 49 1 -0.7295 9.2462 1.9571 50 1 -1.5762 7.6739 2.0849 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154751020.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:40 Heat of formation + Delta-G solvation = -94.616173 kcal Electronic energy + Delta-G solvation = -30660.186290 eV Core-core repulsion = 26495.006733 eV Total energy + Delta-G solvation = -4165.179556 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.77043 -40.88691 -40.00205 -38.87661 -36.04769 -35.63857 -35.39985 -33.74779 -32.72014 -31.41845 -29.70430 -28.34367 -28.04830 -26.32416 -25.79641 -23.73495 -22.97068 -21.71406 -21.61375 -21.12838 -20.75849 -19.77429 -18.62818 -18.13809 -17.36157 -17.07111 -16.91770 -16.62574 -16.37007 -16.13038 -16.04341 -15.91610 -15.64597 -15.23148 -15.01613 -14.86469 -14.39735 -14.22835 -14.08638 -13.97141 -13.75867 -13.62978 -13.49730 -13.08862 -12.93200 -12.86457 -12.83273 -12.57193 -12.42881 -12.37911 -12.30891 -12.01225 -11.88959 -11.55558 -11.46653 -11.35123 -11.32945 -10.93798 -10.67507 -10.31481 -10.20762 -10.03578 -9.17889 -8.40856 -6.00165 1.27610 1.33082 1.33991 1.40932 1.98261 2.05400 2.21243 2.54135 2.62590 3.02069 3.14885 3.21020 3.45190 3.51407 3.74820 3.76601 3.85657 3.97205 4.06661 4.11568 4.15593 4.23958 4.32506 4.34398 4.38094 4.47166 4.57393 4.62966 4.64895 4.72597 4.73775 4.78393 4.80522 4.85300 4.88105 4.93978 5.04489 5.16968 5.27094 5.28526 5.45773 5.47666 5.54506 5.69462 5.92342 6.06013 6.22715 6.56353 6.60814 6.90374 7.20726 7.42029 7.98854 8.76674 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007866 B = 0.003690 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3558.574266 B = 7587.181356 C = 9574.778238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.047 3.953 3 N -0.518 5.518 4 C 0.051 3.949 5 C 0.455 3.545 6 O -0.595 6.595 7 N -0.597 5.597 8 C -0.321 4.321 9 H 0.059 0.941 10 C -0.013 4.013 11 N -0.934 5.934 12 Si 0.957 3.043 13 H -0.262 1.262 14 H -0.275 1.275 15 H -0.234 1.234 16 C 0.072 3.928 17 H 0.112 0.888 18 C -0.184 4.184 19 C 0.127 3.873 20 N -0.700 5.700 21 C 0.538 3.462 22 O -0.584 6.584 23 C -0.143 4.143 24 H 0.149 0.851 25 C -0.176 4.176 26 H 0.110 0.890 27 C 0.075 3.925 28 O -0.391 6.391 29 C 0.074 3.926 30 C -0.158 4.158 31 H 0.122 0.878 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.385 0.615 40 H 0.278 0.722 41 H 0.083 0.917 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.054 0.946 45 H 0.083 0.917 46 H 0.416 0.584 47 H 0.103 0.897 48 H 0.082 0.918 49 H 0.116 0.884 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.116 9.223 -17.722 23.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.080 4.080 3 N -0.243 5.243 4 C -0.080 4.080 5 C 0.242 3.758 6 O -0.479 6.479 7 N -0.239 5.239 8 C -0.450 4.450 9 H 0.077 0.923 10 C -0.211 4.211 11 N -0.575 5.575 12 Si 0.778 3.222 13 H -0.187 1.187 14 H -0.200 1.200 15 H -0.157 1.157 16 C -0.036 4.036 17 H 0.129 0.871 18 C -0.243 4.243 19 C 0.003 3.997 20 N -0.350 5.350 21 C 0.325 3.675 22 O -0.465 6.465 23 C -0.164 4.164 24 H 0.166 0.834 25 C -0.195 4.195 26 H 0.128 0.872 27 C -0.001 4.001 28 O -0.311 6.311 29 C -0.002 4.002 30 C -0.177 4.177 31 H 0.140 0.860 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.121 0.879 39 H 0.220 0.780 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.101 0.899 46 H 0.253 0.747 47 H 0.121 0.879 48 H 0.100 0.900 49 H 0.134 0.866 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.448 9.857 -17.059 23.305 hybrid contribution 1.698 -0.930 -0.209 1.947 sum -10.750 8.927 -17.269 22.214 Atomic orbital electron populations 1.21650 0.93584 1.01752 1.02102 1.22147 0.97252 0.88160 1.00425 1.61776 1.14836 1.18700 1.28949 1.21804 0.91640 1.02831 0.91704 1.20804 0.82532 0.82091 0.90329 1.90526 1.39698 1.52609 1.65033 1.42090 1.08100 1.61881 1.11834 1.18980 0.95057 1.43017 0.87977 0.92256 1.25994 1.01147 0.96911 0.97059 1.69792 1.25202 1.48083 1.14451 0.85469 0.77643 0.79266 0.79828 1.18654 1.20004 1.15712 1.22085 1.02064 0.91799 0.87663 0.87064 1.22381 1.00003 1.01955 0.99928 1.21501 0.94856 0.92647 0.90658 1.45760 1.46288 1.06872 1.36096 1.19811 0.81534 0.82459 0.83674 1.90667 1.43509 1.61003 1.51313 1.22410 1.01625 0.96836 0.95505 0.83365 1.24131 1.00185 1.04683 0.90499 0.87219 1.23018 0.96441 0.84812 0.95876 1.89175 1.80369 1.33315 1.28190 1.23119 0.95040 1.02681 0.79340 1.24167 1.01462 0.90393 1.01630 0.85955 0.92185 0.93210 0.91041 0.92899 0.93485 0.90577 0.87887 0.77973 0.91279 0.89829 0.92204 0.91387 0.92808 0.89909 0.74677 0.87903 0.89965 0.86598 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.85 71.98 0.71 -2.09 16 2 C 0.05 1.23 5.16 86.30 0.44 1.67 16 3 N -0.52 -12.86 3.59 -875.51 -3.14 -16.00 16 4 C 0.05 1.50 4.38 85.56 0.37 1.87 16 5 C 0.45 19.59 7.35 87.66 0.64 20.24 16 6 O -0.60 -30.64 14.05 -3.07 -0.04 -30.68 16 7 N -0.60 -27.72 5.09 -306.98 -1.56 -29.28 16 8 C -0.32 -18.50 10.16 84.04 0.85 -17.64 16 9 H 0.06 4.05 7.39 -2.91 -0.02 4.03 16 10 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 11 N -0.93 -56.10 13.96 21.66 0.30 -55.79 16 12 Si 0.96 39.20 27.74 68.60 1.90 41.11 16 13 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 14 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 15 H -0.23 -8.11 6.52 99.48 0.65 -7.46 16 16 C 0.07 1.23 2.37 44.92 0.11 1.34 16 17 H 0.11 1.57 6.46 -2.39 -0.02 1.55 16 18 C -0.18 -2.57 8.47 71.98 0.61 -1.96 16 19 C 0.13 2.51 4.89 86.38 0.42 2.93 16 20 N -0.70 -15.21 5.41 -463.07 -2.51 -17.72 16 21 C 0.54 13.58 7.61 87.66 0.67 14.25 16 22 O -0.58 -18.74 16.34 -3.03 -0.05 -18.79 16 23 C -0.14 -2.92 5.74 -11.54 -0.07 -2.99 16 24 H 0.15 2.23 8.14 -2.39 -0.02 2.21 16 25 C -0.18 -4.00 6.91 -9.82 -0.07 -4.07 16 26 H 0.11 2.88 8.14 -2.39 -0.02 2.87 16 27 C 0.07 1.54 7.44 72.50 0.54 2.08 16 28 O -0.39 -8.69 11.65 -148.98 -1.74 -10.43 16 29 C 0.07 1.23 7.44 72.48 0.54 1.76 16 30 C -0.16 -3.20 6.64 -9.84 -0.07 -3.26 16 31 H 0.12 2.76 7.82 -2.39 -0.02 2.74 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.07 1.10 6.79 -2.39 -0.02 1.08 16 35 H 0.05 1.89 5.80 -2.39 -0.01 1.87 16 36 H 0.05 1.02 6.28 -2.39 -0.01 1.00 16 37 H 0.08 1.90 6.82 -2.39 -0.02 1.88 16 38 H 0.10 2.78 6.18 -2.39 -0.01 2.76 16 39 H 0.39 15.21 5.76 -92.71 -0.53 14.67 16 40 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 41 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.06 0.91 6.55 -2.39 -0.02 0.89 16 43 H 0.07 0.95 6.51 -2.39 -0.02 0.93 16 44 H 0.05 1.22 6.56 -2.39 -0.02 1.20 16 45 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 46 H 0.42 8.60 8.12 -92.71 -0.75 7.85 16 47 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 48 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 50 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -77.43 395.24 -1.02 -78.46 By element: Atomic # 1 Polarization: 45.61 SS G_CDS: -0.37 Total: 45.24 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: 6.18 Total: 13.89 kcal Atomic # 7 Polarization: -111.88 SS G_CDS: -6.91 Total: -118.80 kcal Atomic # 8 Polarization: -58.07 SS G_CDS: -1.83 Total: -59.90 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 1.90 Total: 41.11 kcal Total: -77.43 -1.02 -78.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154751020.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.158 kcal (2) G-P(sol) polarization free energy of solvation -77.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds