Wall clock time and date at job start Tue Mar 31 2020 22:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00204 * 2 1 4 4 H 1.09002 * 109.46880 * 329.99601 * 3 2 1 5 5 C 1.52997 * 109.47503 * 89.99725 * 3 2 1 6 6 C 1.50708 * 109.47227 * 210.00045 * 3 2 1 7 7 O 1.21280 * 119.99888 * 354.99553 * 6 3 2 8 8 N 1.34777 * 119.99928 * 174.99661 * 6 3 2 9 9 C 1.46500 * 119.99779 * 179.97438 * 8 6 3 10 10 C 1.52997 * 109.47268 * 180.02562 * 9 8 6 11 11 C 1.50699 * 109.47339 * 180.02562 * 10 9 8 12 12 C 1.29822 * 118.54998 * 94.99870 * 11 10 9 13 13 C 1.50142 * 123.27864 * 180.37031 * 12 11 10 14 14 N 1.46846 * 110.27764 * 342.95522 * 13 12 11 15 15 C 1.46901 * 110.99916 * 174.31488 * 14 13 12 16 16 C 1.50705 * 109.46928 * 293.94851 * 15 14 13 17 17 O 1.21293 * 119.99991 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99976 * 180.02562 * 16 15 14 19 19 C 1.37088 * 120.00133 * 180.02562 * 18 16 15 20 20 H 1.08005 * 120.00075 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00198 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00240 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 120.00050 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47599 * 89.99861 * 23 21 19 25 25 H 1.48501 * 109.47380 * 210.00271 * 23 21 19 26 26 H 1.48505 * 109.47162 * 329.99769 * 23 21 19 27 27 C 1.47227 * 110.20765 * 50.92267 * 14 13 12 28 28 C 1.50307 * 118.55159 * 274.73403 * 11 10 9 29 29 H 1.09000 * 109.46567 * 60.00876 * 1 2 3 30 30 H 1.09001 * 109.47118 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47054 * 300.00226 * 1 2 3 32 32 H 1.09002 * 109.47153 * 60.00043 * 5 3 2 33 33 H 1.09001 * 109.46832 * 300.00234 * 5 3 2 34 34 H 1.09004 * 109.47261 * 180.02562 * 5 3 2 35 35 H 0.96999 * 120.00109 * 359.97438 * 8 6 3 36 36 H 1.08997 * 109.47048 * 300.00198 * 9 8 6 37 37 H 1.09008 * 109.47073 * 60.00011 * 9 8 6 38 38 H 1.09006 * 109.46918 * 300.00527 * 10 9 8 39 39 H 1.08999 * 109.46883 * 59.99926 * 10 9 8 40 40 H 1.07997 * 118.36554 * 0.39619 * 12 11 10 41 41 H 1.09005 * 109.33507 * 103.19980 * 13 12 11 42 42 H 1.08997 * 109.34030 * 222.86649 * 13 12 11 43 43 H 1.08999 * 109.47560 * 53.95291 * 15 14 13 44 44 H 1.09001 * 109.47020 * 173.94825 * 15 14 13 45 45 H 0.97008 * 119.99747 * 359.97438 * 18 16 15 46 46 H 0.96998 * 120.00212 * 179.97438 * 22 21 19 47 47 H 1.09006 * 109.63825 * 50.88914 * 27 14 13 48 48 H 1.09006 * 109.63943 * 171.29757 * 27 14 13 49 49 H 1.09000 * 109.43147 * 283.57550 * 28 11 10 50 50 H 1.09003 * 109.42918 * 43.42749 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2177 1.7714 1.4424 6 6 3.3387 1.2638 -0.7104 7 8 3.7898 0.2044 -1.0914 8 7 4.0255 2.4039 -0.9225 9 6 5.3172 2.3634 -1.6126 10 6 5.8817 3.7812 -1.7220 11 6 7.2100 3.7396 -2.4325 12 6 7.2361 3.9547 -3.7125 13 6 8.4975 3.9307 -4.5264 14 7 9.6707 4.0425 -3.6504 15 6 10.9153 3.8855 -4.4147 16 6 11.0013 2.4799 -4.9514 17 8 10.1130 1.6871 -4.7203 18 7 12.0654 2.1039 -5.6882 19 6 12.1435 0.8254 -6.1768 20 1 11.3524 0.1194 -5.9711 21 6 13.2402 0.4379 -6.9368 22 7 13.3153 -0.7878 -7.4048 23 14 14.6087 1.6586 -7.2921 24 1 15.6350 1.5772 -6.2221 25 1 15.2317 1.3367 -8.6011 26 1 14.0472 3.0328 -7.3359 27 6 9.5902 3.0522 -2.5639 28 6 8.4470 3.4568 -1.6268 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.8829 1.0775 1.9563 33 1 1.2568 1.8015 1.9562 34 1 2.6607 2.7674 1.4424 35 1 3.6646 3.2513 -0.6181 36 1 6.0106 1.7391 -1.0492 37 1 5.1827 1.9473 -2.6111 38 1 5.1882 4.4059 -2.2851 39 1 6.0162 4.1967 -0.7234 40 1 6.3039 4.1617 -4.2170 41 1 8.5503 2.9947 -5.0827 42 1 8.4915 4.7664 -5.2261 43 1 10.9239 4.5924 -5.2444 44 1 11.7681 4.0789 -3.7640 45 1 12.7757 2.7381 -5.8733 46 1 14.0807 -1.0582 -7.9357 47 1 9.3942 2.0648 -2.9820 48 1 10.5303 3.0363 -2.0123 49 1 8.7291 4.3503 -1.0698 50 1 8.2473 2.6434 -0.9292 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159451995.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:51 Heat of formation + Delta-G solvation = -91.445981 kcal Electronic energy + Delta-G solvation = -29148.275804 eV Core-core repulsion = 24983.233717 eV Total energy + Delta-G solvation = -4165.042086 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.25013 -39.62322 -38.10135 -37.64043 -35.73167 -34.26967 -33.60478 -32.12661 -31.74038 -30.55854 -29.87341 -27.24397 -27.13620 -25.11213 -24.13874 -23.42351 -22.86400 -21.50715 -20.67791 -19.47256 -18.47772 -17.80148 -17.38572 -17.22094 -16.19632 -15.96995 -15.86349 -15.50232 -15.24133 -15.03778 -14.90680 -14.78576 -14.21644 -14.02054 -13.95336 -13.62765 -13.53444 -13.16834 -12.94080 -12.91250 -12.76992 -12.50784 -12.33009 -12.23487 -12.09204 -11.96321 -11.78085 -11.59508 -11.32888 -11.25756 -10.93322 -10.64722 -10.59986 -10.40672 -10.24885 -10.03940 -9.75966 -9.58993 -9.34057 -9.29978 -8.60184 -8.20224 -7.50464 -6.35854 -3.87188 2.27312 2.38393 2.64525 2.99823 3.04326 3.12828 3.59027 3.64315 4.06312 4.27638 4.30332 4.42947 4.54431 4.64137 4.75427 4.84443 4.86769 4.90113 4.94047 5.04429 5.14375 5.19947 5.21791 5.27774 5.38636 5.46707 5.56244 5.60656 5.66465 5.75505 5.79012 5.85701 5.89162 5.92887 6.00654 6.07609 6.14728 6.24719 6.34893 6.60112 6.60621 6.73038 7.06027 7.21677 7.33784 7.39088 7.52525 7.99248 8.10729 8.52999 8.89913 9.37388 9.75706 10.76910 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018737 B = 0.001875 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.005448 B =14933.183769 C =15977.970625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.070 3.930 4 H 0.086 0.914 5 C -0.170 4.170 6 C 0.509 3.491 7 O -0.513 6.513 8 N -0.730 5.730 9 C 0.123 3.877 10 C -0.090 4.090 11 C -0.127 4.127 12 C -0.133 4.133 13 C 0.065 3.935 14 N -0.508 5.508 15 C 0.036 3.964 16 C 0.413 3.587 17 O -0.575 6.575 18 N -0.583 5.583 19 C -0.308 4.308 20 H 0.119 0.881 21 C 0.042 3.958 22 N -0.878 5.878 23 Si 0.880 3.120 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.269 1.269 27 C 0.031 3.969 28 C -0.072 4.072 29 H 0.043 0.957 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.398 0.602 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.371 0.629 46 H 0.274 0.726 47 H 0.088 0.912 48 H 0.066 0.934 49 H 0.071 0.929 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.349 14.403 15.501 29.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.008 3.992 4 H 0.103 0.897 5 C -0.228 4.228 6 C 0.293 3.707 7 O -0.386 6.386 8 N -0.384 5.384 9 C 0.000 4.000 10 C -0.127 4.127 11 C -0.127 4.127 12 C -0.151 4.151 13 C -0.062 4.062 14 N -0.231 5.231 15 C -0.096 4.096 16 C 0.199 3.801 17 O -0.460 6.460 18 N -0.221 5.221 19 C -0.437 4.437 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.517 5.517 23 Si 0.707 3.293 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.194 1.194 27 C -0.096 4.096 28 C -0.109 4.109 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.232 0.768 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.123 0.877 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.204 0.796 46 H 0.085 0.915 47 H 0.106 0.894 48 H 0.084 0.916 49 H 0.089 0.911 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.379 13.206 15.455 28.785 hybrid contribution 0.826 0.714 -0.711 1.303 sum -19.553 13.920 14.744 28.168 Atomic orbital electron populations 1.22895 0.80543 1.03408 0.99974 1.88077 1.19704 1.25028 1.94906 1.21937 0.93528 0.86995 0.96738 0.89651 1.22231 1.03493 1.02026 0.95049 1.20399 0.86242 0.84224 0.79786 1.90776 1.68948 1.29664 1.49242 1.45973 1.22364 1.09196 1.60839 1.21428 0.83261 0.97466 0.97845 1.20828 0.95083 0.95622 1.01217 1.20592 0.94339 1.02899 0.94920 1.22089 0.98112 1.00139 0.94765 1.21149 0.87817 1.02376 0.94872 1.62965 1.00948 1.48417 1.10745 1.22129 0.94095 0.94791 0.98583 1.21065 0.84215 0.90604 0.84169 1.90461 1.39336 1.54436 1.61721 1.42407 1.19736 1.12809 1.47142 1.19457 1.07828 0.87176 1.29219 0.86329 1.25085 0.97821 0.96334 0.96908 1.69627 1.30668 1.16768 1.34646 0.86657 0.82630 0.80893 0.79141 1.19561 1.20131 1.19402 1.22543 0.97729 0.97185 0.92169 1.20465 0.92480 1.00844 0.97152 0.93791 0.89031 0.93831 0.90912 0.91188 0.90909 0.76794 0.90977 0.91020 0.91056 0.90838 0.87708 0.90010 0.90784 0.89258 0.89055 0.79593 0.91532 0.89437 0.91583 0.91079 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.82 101.05 1.09 1.27 16 2 O -0.36 -3.85 9.89 -55.09 -0.54 -4.39 16 3 C 0.07 0.57 3.13 -27.88 -0.09 0.48 16 4 H 0.09 0.45 7.79 -51.93 -0.40 0.04 16 5 C -0.17 -0.96 9.48 37.16 0.35 -0.61 16 6 C 0.51 5.88 7.18 -10.98 -0.08 5.80 16 7 O -0.51 -8.82 16.51 -14.30 -0.24 -9.06 16 8 N -0.73 -6.27 5.52 -60.29 -0.33 -6.61 16 9 C 0.12 1.32 5.66 -4.04 -0.02 1.29 16 10 C -0.09 -0.80 5.38 -27.89 -0.15 -0.95 16 11 C -0.13 -1.56 5.15 -100.93 -0.52 -2.07 16 12 C -0.13 -1.78 9.50 -35.96 -0.34 -2.13 16 13 C 0.07 1.03 5.41 -5.28 -0.03 1.00 16 14 N -0.51 -8.13 4.93 -237.45 -1.17 -9.30 16 15 C 0.04 0.60 5.84 -4.97 -0.03 0.57 16 16 C 0.41 9.05 7.11 -10.98 -0.08 8.97 16 17 O -0.57 -14.56 11.22 5.55 0.06 -14.49 16 18 N -0.58 -13.64 5.09 -10.96 -0.06 -13.70 16 19 C -0.31 -8.63 10.16 -14.94 -0.15 -8.79 16 20 H 0.12 3.83 7.39 -52.48 -0.39 3.44 16 21 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 22 N -0.88 -25.62 13.96 55.50 0.77 -24.84 16 23 Si 0.88 19.25 27.74 -169.99 -4.71 14.53 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 27 C 0.03 0.51 4.92 -3.51 -0.02 0.49 16 28 C -0.07 -0.93 6.04 -27.94 -0.17 -1.10 16 29 H 0.04 0.23 8.08 -51.93 -0.42 -0.19 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.19 7.87 -51.93 -0.41 -0.22 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.29 7.87 -51.93 -0.41 -0.11 16 34 H 0.07 0.26 7.93 -51.93 -0.41 -0.15 16 35 H 0.40 1.94 8.26 -40.82 -0.34 1.60 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 38 H 0.07 0.54 7.85 -51.93 -0.41 0.13 16 39 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 40 H 0.10 1.21 7.81 -52.49 -0.41 0.80 16 41 H 0.08 1.60 5.79 -51.93 -0.30 1.30 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.09 1.29 8.12 -51.93 -0.42 0.87 16 44 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 45 H 0.37 7.64 5.76 -40.82 -0.24 7.41 16 46 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 47 H 0.09 1.78 5.52 -51.93 -0.29 1.49 16 48 H 0.07 1.04 8.06 -51.93 -0.42 0.62 16 49 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 402.51 15.07 6.07 6.07 Total: -1.00 -36.11 402.51 -8.71 -44.81 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -8.23 Total: 11.69 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -0.32 Total: 5.29 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: -0.78 Total: -54.45 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.72 Total: -27.94 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.71 Total: 14.53 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.11 -8.71 -44.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159451995.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.634 kcal (2) G-P(sol) polarization free energy of solvation -36.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds