Wall clock time and date at job start Tue Mar 31 2020 22:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00204 * 2 1 4 4 H 1.09002 * 109.46880 * 329.99601 * 3 2 1 5 5 C 1.52997 * 109.47503 * 89.99725 * 3 2 1 6 6 C 1.50708 * 109.47227 * 210.00045 * 3 2 1 7 7 O 1.21280 * 119.99888 * 354.99553 * 6 3 2 8 8 N 1.34777 * 119.99928 * 174.99661 * 6 3 2 9 9 C 1.46500 * 119.99779 * 179.97438 * 8 6 3 10 10 C 1.52997 * 109.47268 * 180.02562 * 9 8 6 11 11 C 1.50699 * 109.47339 * 180.02562 * 10 9 8 12 12 C 1.29822 * 118.54998 * 94.99870 * 11 10 9 13 13 C 1.50142 * 123.27864 * 180.37031 * 12 11 10 14 14 N 1.46846 * 110.27764 * 342.95522 * 13 12 11 15 15 C 1.46901 * 110.99916 * 174.31488 * 14 13 12 16 16 C 1.50705 * 109.46928 * 293.94851 * 15 14 13 17 17 O 1.21293 * 119.99991 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99976 * 180.02562 * 16 15 14 19 19 C 1.37088 * 120.00133 * 180.02562 * 18 16 15 20 20 H 1.08005 * 120.00075 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00198 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00240 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 120.00050 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47599 * 89.99861 * 23 21 19 25 25 H 1.48501 * 109.47380 * 210.00271 * 23 21 19 26 26 H 1.48505 * 109.47162 * 329.99769 * 23 21 19 27 27 C 1.47227 * 110.20765 * 50.92267 * 14 13 12 28 28 C 1.50307 * 118.55159 * 274.73403 * 11 10 9 29 29 H 1.09000 * 109.46567 * 60.00876 * 1 2 3 30 30 H 1.09001 * 109.47118 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47054 * 300.00226 * 1 2 3 32 32 H 1.09002 * 109.47153 * 60.00043 * 5 3 2 33 33 H 1.09001 * 109.46832 * 300.00234 * 5 3 2 34 34 H 1.09004 * 109.47261 * 180.02562 * 5 3 2 35 35 H 0.96999 * 120.00109 * 359.97438 * 8 6 3 36 36 H 1.08997 * 109.47048 * 300.00198 * 9 8 6 37 37 H 1.09008 * 109.47073 * 60.00011 * 9 8 6 38 38 H 1.09006 * 109.46918 * 300.00527 * 10 9 8 39 39 H 1.08999 * 109.46883 * 59.99926 * 10 9 8 40 40 H 1.07997 * 118.36554 * 0.39619 * 12 11 10 41 41 H 1.09005 * 109.33507 * 103.19980 * 13 12 11 42 42 H 1.08997 * 109.34030 * 222.86649 * 13 12 11 43 43 H 1.08999 * 109.47560 * 53.95291 * 15 14 13 44 44 H 1.09001 * 109.47020 * 173.94825 * 15 14 13 45 45 H 0.97008 * 119.99747 * 359.97438 * 18 16 15 46 46 H 0.96998 * 120.00212 * 179.97438 * 22 21 19 47 47 H 1.09006 * 109.63825 * 50.88914 * 27 14 13 48 48 H 1.09006 * 109.63943 * 171.29757 * 27 14 13 49 49 H 1.09000 * 109.43147 * 283.57550 * 28 11 10 50 50 H 1.09003 * 109.42918 * 43.42749 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2177 1.7714 1.4424 6 6 3.3387 1.2638 -0.7104 7 8 3.7898 0.2044 -1.0914 8 7 4.0255 2.4039 -0.9225 9 6 5.3172 2.3634 -1.6126 10 6 5.8817 3.7812 -1.7220 11 6 7.2100 3.7396 -2.4325 12 6 7.2361 3.9547 -3.7125 13 6 8.4975 3.9307 -4.5264 14 7 9.6707 4.0425 -3.6504 15 6 10.9153 3.8855 -4.4147 16 6 11.0013 2.4799 -4.9514 17 8 10.1130 1.6871 -4.7203 18 7 12.0654 2.1039 -5.6882 19 6 12.1435 0.8254 -6.1768 20 1 11.3524 0.1194 -5.9711 21 6 13.2402 0.4379 -6.9368 22 7 13.3153 -0.7878 -7.4048 23 14 14.6087 1.6586 -7.2921 24 1 15.6350 1.5772 -6.2221 25 1 15.2317 1.3367 -8.6011 26 1 14.0472 3.0328 -7.3359 27 6 9.5902 3.0522 -2.5639 28 6 8.4470 3.4568 -1.6268 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.8829 1.0775 1.9563 33 1 1.2568 1.8015 1.9562 34 1 2.6607 2.7674 1.4424 35 1 3.6646 3.2513 -0.6181 36 1 6.0106 1.7391 -1.0492 37 1 5.1827 1.9473 -2.6111 38 1 5.1882 4.4059 -2.2851 39 1 6.0162 4.1967 -0.7234 40 1 6.3039 4.1617 -4.2170 41 1 8.5503 2.9947 -5.0827 42 1 8.4915 4.7664 -5.2261 43 1 10.9239 4.5924 -5.2444 44 1 11.7681 4.0789 -3.7640 45 1 12.7757 2.7381 -5.8733 46 1 14.0807 -1.0582 -7.9357 47 1 9.3942 2.0648 -2.9820 48 1 10.5303 3.0363 -2.0123 49 1 8.7291 4.3503 -1.0698 50 1 8.2473 2.6434 -0.9292 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159451995.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:50 Heat of formation + Delta-G solvation = -121.199448 kcal Electronic energy + Delta-G solvation = -29149.566011 eV Core-core repulsion = 24983.233717 eV Total energy + Delta-G solvation = -4166.332294 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.21494 -41.01816 -39.28191 -38.61551 -36.88187 -35.97282 -34.90749 -33.81377 -32.79509 -31.73153 -30.88048 -28.54550 -27.70667 -26.52667 -25.22800 -24.62472 -23.89755 -22.62044 -21.52670 -21.35175 -20.32090 -18.71253 -18.45681 -18.02173 -17.62400 -17.09342 -16.91059 -16.68470 -16.43915 -16.25180 -15.90922 -15.69912 -15.61604 -15.47764 -15.22266 -14.93124 -14.61593 -14.32898 -14.19399 -13.94738 -13.70641 -13.59021 -13.32856 -13.26747 -13.21155 -13.02999 -12.88941 -12.76796 -12.47200 -12.30247 -12.18065 -12.12832 -12.01523 -11.74530 -11.51140 -11.35712 -11.08635 -11.04483 -10.56302 -10.27364 -10.20215 -9.65825 -9.04551 -8.45083 -6.05969 1.27499 1.28219 1.33310 1.42688 1.50799 1.88713 1.90111 2.20333 2.94513 3.00720 3.00815 3.11787 3.61373 3.81595 3.89344 3.94083 4.02549 4.08166 4.15876 4.19443 4.29024 4.38528 4.43709 4.48293 4.53847 4.59972 4.60981 4.68054 4.71425 4.79567 4.81875 4.85159 4.86283 4.94317 5.01309 5.05773 5.13890 5.19955 5.33408 5.36706 5.48581 5.54841 5.90787 5.95783 6.02618 6.05874 6.20155 6.52904 6.54548 6.84961 7.20005 7.35397 7.92407 8.72642 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018737 B = 0.001875 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.005448 B =14933.183769 C =15977.970625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.403 6.403 3 C 0.071 3.929 4 H 0.121 0.879 5 C -0.164 4.164 6 C 0.501 3.499 7 O -0.583 6.583 8 N -0.707 5.707 9 C 0.127 3.873 10 C -0.075 4.075 11 C -0.122 4.122 12 C -0.155 4.155 13 C 0.064 3.936 14 N -0.494 5.494 15 C 0.043 3.957 16 C 0.415 3.585 17 O -0.614 6.614 18 N -0.587 5.587 19 C -0.329 4.329 20 H 0.051 0.949 21 C -0.017 4.017 22 N -0.935 5.935 23 Si 0.967 3.033 24 H -0.257 1.257 25 H -0.275 1.275 26 H -0.229 1.229 27 C 0.029 3.971 28 C -0.070 4.070 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.421 0.579 36 H 0.049 0.951 37 H 0.042 0.958 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.125 0.875 41 H 0.034 0.966 42 H 0.093 0.907 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.390 0.610 46 H 0.279 0.721 47 H 0.038 0.962 48 H 0.071 0.929 49 H 0.096 0.904 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.780 19.710 17.184 33.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.322 6.322 3 C 0.010 3.990 4 H 0.139 0.861 5 C -0.222 4.222 6 C 0.288 3.712 7 O -0.462 6.462 8 N -0.361 5.361 9 C 0.003 3.997 10 C -0.112 4.112 11 C -0.123 4.123 12 C -0.173 4.173 13 C -0.063 4.063 14 N -0.216 5.216 15 C -0.088 4.088 16 C 0.203 3.797 17 O -0.500 6.500 18 N -0.228 5.228 19 C -0.459 4.459 20 H 0.069 0.931 21 C -0.216 4.216 22 N -0.575 5.575 23 Si 0.787 3.213 24 H -0.181 1.181 25 H -0.200 1.200 26 H -0.152 1.152 27 C -0.099 4.099 28 C -0.107 4.107 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.118 0.882 35 H 0.260 0.740 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.114 0.886 39 H 0.120 0.880 40 H 0.142 0.858 41 H 0.052 0.948 42 H 0.111 0.889 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.226 0.774 46 H 0.089 0.911 47 H 0.056 0.944 48 H 0.090 0.910 49 H 0.114 0.886 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.856 18.597 17.177 32.800 hybrid contribution 0.809 -1.025 -1.162 1.748 sum -20.047 17.572 16.015 31.099 Atomic orbital electron populations 1.23088 0.78546 1.04076 1.01626 1.88027 1.22067 1.26902 1.95210 1.22123 0.91754 0.86957 0.98153 0.86111 1.22240 1.04363 1.02619 0.92979 1.21273 0.87416 0.83660 0.78879 1.90745 1.70849 1.32276 1.52321 1.45746 1.21209 1.09729 1.59462 1.21217 0.83935 0.98439 0.96106 1.20757 0.93354 0.94351 1.02767 1.20883 0.95714 1.00846 0.94841 1.22167 0.97782 1.02081 0.95273 1.21138 0.89110 1.00704 0.95360 1.63074 1.00927 1.47200 1.10389 1.22351 0.95554 0.90839 1.00102 1.22386 0.82605 0.92606 0.82102 1.90493 1.40652 1.56516 1.62313 1.42239 1.21130 1.11422 1.48032 1.18987 1.07043 0.88595 1.31240 0.93111 1.26189 1.00813 0.98853 0.95708 1.69816 1.32157 1.19747 1.35790 0.85330 0.77834 0.79194 0.78941 1.18124 1.20046 1.15208 1.22487 0.99533 0.94968 0.92881 1.20480 0.91556 1.02003 0.96647 0.92718 0.89086 0.91447 0.93238 0.89128 0.88227 0.74015 0.93303 0.93953 0.88584 0.87997 0.85754 0.94818 0.88854 0.86050 0.85914 0.77424 0.91135 0.94417 0.91035 0.88588 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.82 113.37 1.23 1.48 16 2 O -0.40 -8.55 9.89 -129.99 -1.29 -9.84 16 3 C 0.07 1.04 3.13 29.85 0.09 1.14 16 4 H 0.12 0.87 7.79 -2.39 -0.02 0.85 16 5 C -0.16 -1.44 9.48 71.98 0.68 -0.76 16 6 C 0.50 11.56 7.18 87.66 0.63 12.19 16 7 O -0.58 -21.40 16.51 15.96 0.26 -21.14 16 8 N -0.71 -11.08 5.52 -463.05 -2.55 -13.63 16 9 C 0.13 2.68 5.66 86.38 0.49 3.17 16 10 C -0.07 -1.11 5.38 29.85 0.16 -0.95 16 11 C -0.12 -2.79 5.15 -15.40 -0.08 -2.87 16 12 C -0.15 -4.00 9.50 26.69 0.25 -3.75 16 13 C 0.06 2.02 5.41 85.39 0.46 2.48 16 14 N -0.49 -15.11 4.93 -905.15 -4.46 -19.57 16 15 C 0.04 1.34 5.84 85.56 0.50 1.84 16 16 C 0.42 18.57 7.11 87.66 0.62 19.19 16 17 O -0.61 -33.33 11.22 -3.07 -0.03 -33.36 16 18 N -0.59 -27.76 5.09 -306.98 -1.56 -29.33 16 19 C -0.33 -19.54 10.16 84.04 0.85 -18.68 16 20 H 0.05 3.62 7.39 -2.91 -0.02 3.60 16 21 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 22 N -0.93 -57.32 13.96 21.66 0.30 -57.02 16 23 Si 0.97 39.14 27.74 68.60 1.90 41.04 16 24 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 25 H -0.28 -11.08 7.11 99.48 0.71 -10.38 16 26 H -0.23 -7.73 6.52 99.48 0.65 -7.08 16 27 C 0.03 0.96 4.92 86.33 0.42 1.38 16 28 C -0.07 -1.70 6.04 29.81 0.18 -1.52 16 29 H 0.05 0.47 8.08 -2.39 -0.02 0.46 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 0.41 7.87 -2.39 -0.02 0.39 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.09 0.45 7.87 -2.39 -0.02 0.43 16 34 H 0.10 0.31 7.93 -2.38 -0.02 0.29 16 35 H 0.42 2.58 8.26 -92.71 -0.77 1.82 16 36 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.10 1.04 7.85 -2.38 -0.02 1.02 16 39 H 0.10 1.02 8.12 -2.39 -0.02 1.00 16 40 H 0.12 2.66 7.81 -2.91 -0.02 2.64 16 41 H 0.03 1.40 5.79 -2.38 -0.01 1.39 16 42 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 43 H 0.12 3.05 8.12 -2.39 -0.02 3.03 16 44 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 45 H 0.39 15.22 5.76 -92.70 -0.53 14.68 16 46 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 47 H 0.04 1.63 5.52 -2.38 -0.01 1.62 16 48 H 0.07 2.20 8.06 -2.38 -0.02 2.18 16 49 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 50 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -91.31 402.51 -0.87 -92.17 By element: Atomic # 1 Polarization: 37.21 SS G_CDS: -0.41 Total: 36.80 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 6.97 Total: 13.86 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -8.28 Total: -119.55 kcal Atomic # 8 Polarization: -63.28 SS G_CDS: -1.06 Total: -64.34 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 1.90 Total: 41.04 kcal Total: -91.31 -0.87 -92.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159451995.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.026 kcal (2) G-P(sol) polarization free energy of solvation -91.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds