Wall clock time and date at job start Tue Mar 31 2020 22:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46830 * 2 1 4 4 O 1.42898 * 109.47240 * 119.99803 * 2 1 3 5 5 C 1.42900 * 114.00468 * 269.99905 * 4 2 1 6 6 C 1.52991 * 109.47501 * 179.97438 * 5 4 2 7 7 C 1.52998 * 117.50458 * 243.75256 * 6 5 4 8 8 C 1.52995 * 117.50089 * 175.08812 * 6 5 4 9 9 C 1.50696 * 109.47374 * 240.00131 * 2 1 3 10 10 O 1.21278 * 120.00106 * 253.26847 * 9 2 1 11 11 N 1.34782 * 119.99949 * 73.26348 * 9 2 1 12 12 C 1.47026 * 125.64822 * 355.23379 * 11 9 2 13 13 C 1.54322 * 107.26998 * 181.03360 * 12 11 9 14 14 C 1.55449 * 102.96750 * 22.19650 * 13 12 11 15 15 H 1.09003 * 111.01269 * 82.52362 * 14 13 12 16 16 N 1.46905 * 111.11529 * 206.46234 * 14 13 12 17 17 C 1.46901 * 110.99813 * 267.10335 * 16 14 13 18 18 C 1.50704 * 109.47049 * 179.97438 * 17 16 14 19 19 O 1.21290 * 119.99606 * 0.02562 * 18 17 16 20 20 N 1.34771 * 120.00045 * 179.97438 * 18 17 16 21 21 C 1.37092 * 120.00115 * 179.97438 * 20 18 17 22 22 H 1.08004 * 120.00200 * 0.02562 * 21 20 18 23 23 C 1.38954 * 120.00347 * 180.02562 * 21 20 18 24 24 N 1.31418 * 119.99760 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00294 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46932 * 59.99594 * 25 23 21 27 27 H 1.48495 * 109.47169 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46890 * 299.99846 * 25 23 21 29 29 C 1.47421 * 125.64915 * 175.20834 * 11 9 2 30 30 H 1.09001 * 109.47249 * 293.92557 * 1 2 3 31 31 H 1.08994 * 109.47482 * 53.92944 * 1 2 3 32 32 H 1.09001 * 109.46952 * 173.93100 * 1 2 3 33 33 H 1.08997 * 109.47028 * 300.00611 * 5 4 2 34 34 H 1.09011 * 109.46514 * 60.00170 * 5 4 2 35 35 H 1.09006 * 115.54731 * 29.42179 * 6 5 4 36 36 H 1.09000 * 117.49839 * 359.97438 * 7 6 5 37 37 H 1.08997 * 117.49970 * 145.02134 * 7 6 5 38 38 H 1.09010 * 117.50202 * 214.98476 * 8 6 5 39 39 H 1.08999 * 117.49792 * 359.97438 * 8 6 5 40 40 H 1.09000 * 109.88304 * 300.45681 * 12 11 9 41 41 H 1.08995 * 109.87959 * 61.46521 * 12 11 9 42 42 H 1.09006 * 110.71629 * 140.55397 * 13 12 11 43 43 H 1.08993 * 110.72119 * 263.65419 * 13 12 11 44 44 H 1.00898 * 110.99994 * 143.14887 * 16 14 13 45 45 H 1.09002 * 109.46944 * 299.99661 * 17 16 14 46 46 H 1.08997 * 109.47712 * 59.99716 * 17 16 14 47 47 H 0.97008 * 119.99953 * 0.02562 * 20 18 17 48 48 H 0.96996 * 119.99755 * 180.02562 * 24 23 21 49 49 H 1.09001 * 110.36741 * 274.73216 * 29 11 9 50 50 H 1.09000 * 110.37019 * 36.94298 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2002 0.1829 2.2941 6 6 2.7080 -0.6407 3.4791 7 6 1.8107 -0.7277 4.7153 8 6 3.0878 0.1153 4.7539 9 6 2.0324 -0.7103 -1.2304 10 8 2.5196 -1.8169 -1.1354 11 7 1.9401 -0.1160 -2.4366 12 6 1.2865 1.1725 -2.7092 13 6 1.4055 1.4349 -4.2253 14 6 1.6220 0.0109 -4.8098 15 1 0.6723 -0.5098 -4.9325 16 7 2.3575 0.0665 -6.0803 17 6 1.4339 0.1170 -7.2215 18 6 2.2229 0.1737 -8.5042 19 8 3.4354 0.1718 -8.4709 20 7 1.5814 0.2256 -9.6883 21 6 2.2991 0.2778 -10.8551 22 1 3.3787 0.2769 -10.8255 23 6 1.6377 0.3318 -12.0759 24 7 0.3240 0.3323 -12.1120 25 14 2.6157 0.4022 -13.6659 26 1 3.4714 -0.8067 -13.7746 27 1 1.6821 0.4525 -14.8195 28 1 3.4712 1.6160 -13.6674 29 6 2.4784 -0.6498 -3.7009 30 1 -0.3634 0.4168 0.9394 31 1 -0.3634 0.6050 -0.8306 32 1 -0.3633 -1.0219 -0.1087 33 1 2.9319 0.9514 2.0450 34 1 1.2537 0.6546 2.5589 35 1 3.2969 -1.5212 3.2218 36 1 0.8587 -0.1978 4.6845 37 1 1.8096 -1.6652 5.2715 38 1 3.9264 -0.2680 5.3354 39 1 2.9764 1.1995 4.7481 40 1 0.2360 1.1231 -2.4228 41 1 1.7853 1.9661 -2.1530 42 1 0.4872 1.8754 -4.6136 43 1 2.2601 2.0765 -4.4397 44 1 2.9937 -0.7121 -6.1642 45 1 0.8056 -0.7738 -7.2201 46 1 0.8061 1.0044 -7.1420 47 1 0.6116 0.2267 -9.7149 48 1 -0.1377 0.3696 -12.9642 49 1 3.5262 -0.3718 -3.8146 50 1 2.3688 -1.7339 -3.7323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181444287.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:03 Heat of formation + Delta-G solvation = -82.177929 kcal Electronic energy + Delta-G solvation = -28687.332278 eV Core-core repulsion = 24522.692084 eV Total energy + Delta-G solvation = -4164.640194 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.55715 -38.98450 -38.33645 -37.65684 -36.77440 -34.84095 -33.82986 -32.17588 -31.24795 -30.55713 -28.97316 -27.55447 -26.27943 -24.83404 -23.77978 -22.96788 -22.78644 -21.23803 -20.73560 -19.70414 -19.23843 -17.91743 -17.82076 -17.15892 -16.63171 -16.31202 -15.87001 -15.73233 -15.44141 -15.23307 -14.76852 -14.58434 -14.43324 -14.10510 -13.78461 -13.70587 -13.49297 -13.33665 -13.13199 -12.96527 -12.62854 -12.50727 -12.38610 -12.10356 -11.99233 -11.71702 -11.69004 -11.47144 -11.44332 -11.24058 -11.04747 -10.93310 -10.86451 -10.81013 -10.45365 -10.23027 -10.14139 -9.74014 -9.51901 -8.89005 -8.51577 -8.18064 -7.98451 -6.43544 -3.84470 2.30631 2.37510 3.18053 3.19245 3.25162 3.29579 3.46143 3.87953 4.02249 4.03743 4.25445 4.31347 4.40269 4.43521 4.48137 4.50078 4.55373 4.61375 4.78595 4.81992 4.96295 5.01050 5.07606 5.14246 5.15272 5.16797 5.21130 5.24851 5.30134 5.32415 5.41853 5.59609 5.63111 5.66662 5.67778 5.74066 5.76712 5.80346 5.90193 5.96293 6.04715 6.24839 6.68617 7.10590 7.23018 7.53121 7.53578 7.91950 8.03848 8.58841 9.15842 9.51765 10.03041 10.74021 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.044422 B = 0.001497 C = 0.001480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.170839 B =18698.639316 C =18916.403528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.078 3.922 3 H 0.084 0.916 4 O -0.354 6.354 5 C 0.091 3.909 6 C -0.153 4.153 7 C -0.177 4.177 8 C -0.173 4.173 9 C 0.531 3.469 10 O -0.518 6.518 11 N -0.616 5.616 12 C 0.095 3.905 13 C -0.122 4.122 14 C 0.073 3.927 15 H 0.063 0.937 16 N -0.655 5.655 17 C 0.052 3.948 18 C 0.440 3.560 19 O -0.583 6.583 20 N -0.562 5.562 21 C -0.301 4.301 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.273 1.273 29 C 0.106 3.894 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.354 0.646 45 H 0.046 0.954 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.082 0.918 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.932 3.440 29.691 30.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.016 3.984 3 H 0.102 0.898 4 O -0.273 6.273 5 C 0.014 3.986 6 C -0.172 4.172 7 C -0.214 4.214 8 C -0.210 4.210 9 C 0.318 3.682 10 O -0.392 6.392 11 N -0.352 5.352 12 C -0.028 4.028 13 C -0.161 4.161 14 C -0.038 4.038 15 H 0.080 0.920 16 N -0.289 5.289 17 C -0.081 4.081 18 C 0.225 3.775 19 O -0.467 6.467 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.178 4.178 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.017 4.017 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.134 0.866 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.110 0.890 44 H 0.174 0.826 45 H 0.064 0.936 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.100 0.900 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.842 3.267 29.706 30.020 hybrid contribution -0.682 -0.470 -0.919 1.236 sum -3.524 2.798 28.788 29.137 Atomic orbital electron populations 1.22275 0.93378 1.04044 1.03314 1.21799 0.95269 0.95982 0.85329 0.89809 1.88045 1.86481 1.34043 1.18681 1.22129 0.99072 0.92028 0.85337 1.22116 1.04207 1.02563 0.88267 1.23086 0.94902 1.02204 1.01167 1.22994 0.99392 0.98851 0.99795 1.19998 0.79191 0.86034 0.83001 1.90738 1.44107 1.19067 1.85305 1.48293 1.57379 1.22489 1.07073 1.22263 0.97551 0.85137 0.97821 1.22766 1.03911 0.97727 0.91669 1.22729 0.96000 0.95651 0.89455 0.91953 1.60079 1.18507 1.51262 0.99025 1.21730 0.94490 1.01326 0.90554 1.19766 0.88544 0.84691 0.84498 1.90531 1.13827 1.55498 1.86846 1.41846 1.09279 1.64151 1.04609 1.19663 0.93123 1.47652 0.82612 0.87943 1.25260 0.95758 0.97230 0.99586 1.69604 1.06841 1.50407 1.27436 0.85915 0.78905 0.79105 0.80284 1.19902 1.20971 1.19866 1.22371 0.98466 0.99262 0.81604 0.91052 0.90572 0.91009 0.92674 0.92910 0.86596 0.88666 0.88517 0.88295 0.88631 0.91061 0.91162 0.89966 0.89018 0.82552 0.93645 0.89488 0.77456 0.91807 0.90016 0.90218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 9.39 37.16 0.35 -0.84 16 2 C 0.08 0.71 2.53 -27.89 -0.07 0.64 16 3 H 0.08 0.56 7.51 -51.93 -0.39 0.17 16 4 O -0.35 -3.89 9.56 -54.78 -0.52 -4.41 16 5 C 0.09 0.68 6.03 37.15 0.22 0.91 16 6 C -0.15 -1.13 6.05 -90.63 -0.55 -1.67 16 7 C -0.18 -1.03 10.18 -26.69 -0.27 -1.30 16 8 C -0.17 -0.93 10.25 -26.70 -0.27 -1.20 16 9 C 0.53 6.63 7.16 -10.98 -0.08 6.55 16 10 O -0.52 -8.82 16.78 -13.99 -0.23 -9.06 16 11 N -0.62 -6.59 3.33 -170.53 -0.57 -7.15 16 12 C 0.10 0.72 6.11 -3.06 -0.02 0.71 16 13 C -0.12 -1.13 6.66 -24.74 -0.16 -1.29 16 14 C 0.07 0.83 3.40 -65.40 -0.22 0.61 16 15 H 0.06 0.69 7.83 -51.93 -0.41 0.28 16 16 N -0.66 -9.83 6.04 -105.55 -0.64 -10.47 16 17 C 0.05 0.86 6.03 -4.97 -0.03 0.83 16 18 C 0.44 10.10 7.82 -10.99 -0.09 10.01 16 19 O -0.58 -15.53 15.78 5.55 0.09 -15.45 16 20 N -0.56 -13.98 5.29 -10.96 -0.06 -14.03 16 21 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 22 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 23 C 0.02 0.62 5.50 -17.46 -0.10 0.52 16 24 N -0.90 -24.22 13.05 55.50 0.72 -23.49 16 25 Si 0.93 20.88 29.55 -169.99 -5.02 15.85 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 29 C 0.11 1.24 6.32 -2.53 -0.02 1.22 16 30 H 0.07 0.38 7.77 -51.93 -0.40 -0.02 16 31 H 0.08 0.40 5.72 -51.93 -0.30 0.10 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 34 H 0.05 0.31 7.50 -51.92 -0.39 -0.08 16 35 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.09 0.48 8.03 -51.93 -0.42 0.06 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.47 8.14 -51.92 -0.42 0.05 16 39 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.42 6.05 -51.93 -0.31 0.10 16 41 H 0.07 0.42 7.99 -51.93 -0.42 0.01 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.35 5.59 8.14 -39.29 -0.32 5.27 16 45 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 46 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 47 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 48 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 50 H 0.08 1.00 7.99 -51.93 -0.41 0.59 16 LS Contribution 411.17 15.07 6.20 6.20 Total: -1.00 -34.28 411.17 -9.73 -44.01 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -8.25 Total: 10.77 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -1.45 Total: 7.24 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.54 Total: -55.15 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.67 Total: -28.92 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.28 -9.73 -44.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181444287.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.169 kcal (2) G-P(sol) polarization free energy of solvation -34.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds