Wall clock time and date at job start Tue Mar 31 2020 22:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46830 * 2 1 4 4 O 1.42898 * 109.47240 * 119.99803 * 2 1 3 5 5 C 1.42900 * 114.00468 * 269.99905 * 4 2 1 6 6 C 1.52991 * 109.47501 * 179.97438 * 5 4 2 7 7 C 1.52998 * 117.50458 * 243.75256 * 6 5 4 8 8 C 1.52995 * 117.50089 * 175.08812 * 6 5 4 9 9 C 1.50696 * 109.47374 * 240.00131 * 2 1 3 10 10 O 1.21278 * 120.00106 * 253.26847 * 9 2 1 11 11 N 1.34782 * 119.99949 * 73.26348 * 9 2 1 12 12 C 1.47026 * 125.64822 * 355.23379 * 11 9 2 13 13 C 1.54322 * 107.26998 * 181.03360 * 12 11 9 14 14 C 1.55449 * 102.96750 * 22.19650 * 13 12 11 15 15 H 1.09003 * 111.01269 * 82.52362 * 14 13 12 16 16 N 1.46905 * 111.11529 * 206.46234 * 14 13 12 17 17 C 1.46901 * 110.99813 * 267.10335 * 16 14 13 18 18 C 1.50704 * 109.47049 * 179.97438 * 17 16 14 19 19 O 1.21290 * 119.99606 * 0.02562 * 18 17 16 20 20 N 1.34771 * 120.00045 * 179.97438 * 18 17 16 21 21 C 1.37092 * 120.00115 * 179.97438 * 20 18 17 22 22 H 1.08004 * 120.00200 * 0.02562 * 21 20 18 23 23 C 1.38954 * 120.00347 * 180.02562 * 21 20 18 24 24 N 1.31418 * 119.99760 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00294 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46932 * 59.99594 * 25 23 21 27 27 H 1.48495 * 109.47169 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46890 * 299.99846 * 25 23 21 29 29 C 1.47421 * 125.64915 * 175.20834 * 11 9 2 30 30 H 1.09001 * 109.47249 * 293.92557 * 1 2 3 31 31 H 1.08994 * 109.47482 * 53.92944 * 1 2 3 32 32 H 1.09001 * 109.46952 * 173.93100 * 1 2 3 33 33 H 1.08997 * 109.47028 * 300.00611 * 5 4 2 34 34 H 1.09011 * 109.46514 * 60.00170 * 5 4 2 35 35 H 1.09006 * 115.54731 * 29.42179 * 6 5 4 36 36 H 1.09000 * 117.49839 * 359.97438 * 7 6 5 37 37 H 1.08997 * 117.49970 * 145.02134 * 7 6 5 38 38 H 1.09010 * 117.50202 * 214.98476 * 8 6 5 39 39 H 1.08999 * 117.49792 * 359.97438 * 8 6 5 40 40 H 1.09000 * 109.88304 * 300.45681 * 12 11 9 41 41 H 1.08995 * 109.87959 * 61.46521 * 12 11 9 42 42 H 1.09006 * 110.71629 * 140.55397 * 13 12 11 43 43 H 1.08993 * 110.72119 * 263.65419 * 13 12 11 44 44 H 1.00898 * 110.99994 * 143.14887 * 16 14 13 45 45 H 1.09002 * 109.46944 * 299.99661 * 17 16 14 46 46 H 1.08997 * 109.47712 * 59.99716 * 17 16 14 47 47 H 0.97008 * 119.99953 * 0.02562 * 20 18 17 48 48 H 0.96996 * 119.99755 * 180.02562 * 24 23 21 49 49 H 1.09001 * 110.36741 * 274.73216 * 29 11 9 50 50 H 1.09000 * 110.37019 * 36.94298 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2002 0.1829 2.2941 6 6 2.7080 -0.6407 3.4791 7 6 1.8107 -0.7277 4.7153 8 6 3.0878 0.1153 4.7539 9 6 2.0324 -0.7103 -1.2304 10 8 2.5196 -1.8169 -1.1354 11 7 1.9401 -0.1160 -2.4366 12 6 1.2865 1.1725 -2.7092 13 6 1.4055 1.4349 -4.2253 14 6 1.6220 0.0109 -4.8098 15 1 0.6723 -0.5098 -4.9325 16 7 2.3575 0.0665 -6.0803 17 6 1.4339 0.1170 -7.2215 18 6 2.2229 0.1737 -8.5042 19 8 3.4354 0.1718 -8.4709 20 7 1.5814 0.2256 -9.6883 21 6 2.2991 0.2778 -10.8551 22 1 3.3787 0.2769 -10.8255 23 6 1.6377 0.3318 -12.0759 24 7 0.3240 0.3323 -12.1120 25 14 2.6157 0.4022 -13.6659 26 1 3.4714 -0.8067 -13.7746 27 1 1.6821 0.4525 -14.8195 28 1 3.4712 1.6160 -13.6674 29 6 2.4784 -0.6498 -3.7009 30 1 -0.3634 0.4168 0.9394 31 1 -0.3634 0.6050 -0.8306 32 1 -0.3633 -1.0219 -0.1087 33 1 2.9319 0.9514 2.0450 34 1 1.2537 0.6546 2.5589 35 1 3.2969 -1.5212 3.2218 36 1 0.8587 -0.1978 4.6845 37 1 1.8096 -1.6652 5.2715 38 1 3.9264 -0.2680 5.3354 39 1 2.9764 1.1995 4.7481 40 1 0.2360 1.1231 -2.4228 41 1 1.7853 1.9661 -2.1530 42 1 0.4872 1.8754 -4.6136 43 1 2.2601 2.0765 -4.4397 44 1 2.9937 -0.7121 -6.1642 45 1 0.8056 -0.7738 -7.2201 46 1 0.8061 1.0044 -7.1420 47 1 0.6116 0.2267 -9.7149 48 1 -0.1377 0.3696 -12.9642 49 1 3.5262 -0.3718 -3.8146 50 1 2.3688 -1.7339 -3.7323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181444287.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:02 Heat of formation + Delta-G solvation = -106.719351 kcal Electronic energy + Delta-G solvation = -28688.396473 eV Core-core repulsion = 24522.692084 eV Total energy + Delta-G solvation = -4165.704389 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.42741 -40.19750 -39.52464 -38.63235 -37.42988 -36.22952 -35.59480 -33.28412 -32.90281 -31.40524 -29.96385 -28.08721 -27.79136 -26.00292 -25.11914 -23.65523 -23.23720 -21.77054 -21.65070 -21.12441 -20.42542 -19.89051 -18.56622 -17.98990 -17.81644 -17.19822 -17.04354 -16.78604 -16.41997 -16.31539 -16.14039 -15.82028 -15.33237 -15.24919 -15.11016 -14.71353 -14.40535 -14.23043 -14.04003 -13.91896 -13.74048 -13.47553 -13.43725 -13.24891 -13.07075 -12.83702 -12.73914 -12.43945 -12.40475 -12.38406 -12.19119 -12.11349 -12.00683 -11.68478 -11.49367 -11.44954 -11.32855 -10.88038 -10.46013 -10.34087 -10.00629 -9.76103 -9.41401 -8.45865 -5.94420 1.40517 1.42723 1.43125 1.52835 1.55627 2.06543 2.29895 2.59020 2.90456 2.97257 3.21681 3.25422 3.51195 3.64193 3.71624 3.80245 3.91238 3.95273 3.99097 4.07206 4.12920 4.25522 4.28482 4.31043 4.34934 4.45378 4.49673 4.54911 4.63030 4.67080 4.69409 4.75132 4.77612 4.82238 4.83045 5.00749 5.04311 5.13656 5.19024 5.22244 5.23946 5.29624 5.41885 5.88166 6.07772 6.09107 6.28722 6.40688 6.61095 7.01483 7.13638 7.57353 8.12869 8.71127 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.044422 B = 0.001497 C = 0.001480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.170839 B =18698.639316 C =18916.403528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.080 3.920 3 H 0.115 0.885 4 O -0.390 6.390 5 C 0.089 3.911 6 C -0.178 4.178 7 C -0.175 4.175 8 C -0.161 4.161 9 C 0.522 3.478 10 O -0.578 6.578 11 N -0.612 5.612 12 C 0.094 3.906 13 C -0.117 4.117 14 C 0.077 3.923 15 H 0.074 0.926 16 N -0.668 5.668 17 C 0.068 3.932 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.572 5.572 21 C -0.336 4.336 22 H 0.078 0.922 23 C -0.010 4.010 24 N -0.919 5.919 25 Si 0.991 3.009 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.272 1.272 29 C 0.106 3.894 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.079 0.921 44 H 0.345 0.655 45 H 0.067 0.933 46 H 0.112 0.888 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.070 0.930 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.808 5.563 30.831 31.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.019 3.981 3 H 0.132 0.868 4 O -0.309 6.309 5 C 0.013 3.987 6 C -0.196 4.196 7 C -0.212 4.212 8 C -0.197 4.197 9 C 0.311 3.689 10 O -0.457 6.457 11 N -0.347 5.347 12 C -0.027 4.027 13 C -0.156 4.156 14 C -0.034 4.034 15 H 0.092 0.908 16 N -0.300 5.300 17 C -0.064 4.064 18 C 0.224 3.776 19 O -0.511 6.511 20 N -0.209 5.209 21 C -0.466 4.466 22 H 0.096 0.904 23 C -0.210 4.210 24 N -0.560 5.560 25 Si 0.815 3.185 26 H -0.199 1.199 27 H -0.195 1.195 28 H -0.197 1.197 29 C -0.018 4.018 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.125 0.875 37 H 0.114 0.886 38 H 0.121 0.879 39 H 0.129 0.871 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.121 0.879 43 H 0.098 0.902 44 H 0.164 0.836 45 H 0.085 0.915 46 H 0.130 0.870 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.088 0.912 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.766 5.435 30.859 31.694 hybrid contribution -0.058 -1.146 -1.219 1.674 sum -4.824 4.289 29.640 30.334 Atomic orbital electron populations 1.22270 0.91403 1.03351 1.05345 1.21938 0.96578 0.96394 0.83169 0.86777 1.88017 1.86903 1.36031 1.19925 1.22295 1.00399 0.91736 0.84240 1.22121 1.05506 1.02687 0.89315 1.23175 0.95568 1.02540 0.99874 1.23084 0.99215 0.99571 0.97870 1.20813 0.78236 0.85545 0.84285 1.90704 1.46980 1.21805 1.86234 1.48373 1.56747 1.23356 1.06200 1.22520 0.99232 0.84007 0.96946 1.22768 1.04409 0.95771 0.92633 1.22763 0.95629 0.97551 0.87425 0.90791 1.60113 1.18774 1.51177 0.99961 1.21587 0.93878 1.03429 0.87555 1.20890 0.88512 0.82265 0.85923 1.90502 1.16089 1.56750 1.87758 1.41906 1.09388 1.64882 1.04721 1.19631 0.92489 1.49980 0.84475 0.90395 1.25996 0.96772 0.96235 1.02014 1.69659 1.07687 1.50155 1.28451 0.85019 0.77794 0.78898 0.76818 1.19879 1.19457 1.19707 1.22233 0.98193 0.98516 0.82824 0.88996 0.88412 0.93133 0.91827 0.90716 0.89057 0.87486 0.88583 0.87943 0.87107 0.88229 0.88687 0.87939 0.90201 0.83567 0.91496 0.87015 0.76887 0.91293 0.91199 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 9.39 71.98 0.68 -1.14 16 2 C 0.08 1.31 2.53 29.85 0.08 1.38 16 3 H 0.11 1.13 7.51 -2.39 -0.02 1.11 16 4 O -0.39 -8.37 9.56 -130.29 -1.24 -9.61 16 5 C 0.09 1.20 6.03 71.98 0.43 1.64 16 6 C -0.18 -2.55 6.05 -10.80 -0.07 -2.61 16 7 C -0.17 -1.81 10.18 30.62 0.31 -1.50 16 8 C -0.16 -1.48 10.25 30.62 0.31 -1.16 16 9 C 0.52 12.88 7.16 87.65 0.63 13.51 16 10 O -0.58 -20.69 16.78 15.67 0.26 -20.43 16 11 N -0.61 -12.29 3.33 -811.81 -2.70 -14.99 16 12 C 0.09 1.09 6.11 86.73 0.53 1.62 16 13 C -0.12 -1.81 6.66 31.89 0.21 -1.60 16 14 C 0.08 1.62 3.40 46.41 0.16 1.78 16 15 H 0.07 1.44 7.83 -2.39 -0.02 1.42 16 16 N -0.67 -19.54 6.04 -487.86 -2.95 -22.49 16 17 C 0.07 2.15 6.03 85.56 0.52 2.67 16 18 C 0.44 20.18 7.82 87.66 0.69 20.87 16 19 O -0.62 -34.14 15.78 -3.06 -0.05 -34.19 16 20 N -0.57 -28.70 5.29 -306.99 -1.62 -30.33 16 21 C -0.34 -18.92 9.68 84.04 0.81 -18.10 16 22 H 0.08 4.69 7.16 -2.91 -0.02 4.66 16 23 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 24 N -0.92 -48.83 13.05 21.67 0.28 -48.55 16 25 Si 0.99 42.58 29.55 68.60 2.03 44.60 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 28 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 29 C 0.11 2.49 6.32 86.85 0.55 3.04 16 30 H 0.09 0.64 7.77 -2.39 -0.02 0.62 16 31 H 0.10 0.60 5.72 -2.39 -0.01 0.59 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.71 8.08 -2.39 -0.02 0.69 16 34 H 0.07 0.65 7.50 -2.38 -0.02 0.63 16 35 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.11 0.85 8.03 -2.39 -0.02 0.83 16 37 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.11 0.68 8.14 -2.39 -0.02 0.67 16 40 H 0.10 0.66 6.05 -2.39 -0.01 0.65 16 41 H 0.09 0.72 7.99 -2.39 -0.02 0.70 16 42 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 43 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.35 11.11 8.14 -89.70 -0.73 10.38 16 45 H 0.07 1.87 8.09 -2.39 -0.02 1.85 16 46 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 47 H 0.40 18.78 7.90 -92.70 -0.73 18.05 16 48 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 49 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 50 H 0.06 1.68 7.99 -2.39 -0.02 1.66 16 Total: -1.00 -78.20 411.17 -0.19 -78.40 By element: Atomic # 1 Polarization: 37.77 SS G_CDS: -0.50 Total: 37.26 kcal Atomic # 6 Polarization: 14.02 SS G_CDS: 6.30 Total: 20.32 kcal Atomic # 7 Polarization: -109.37 SS G_CDS: -6.99 Total: -116.36 kcal Atomic # 8 Polarization: -63.20 SS G_CDS: -1.03 Total: -64.23 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -78.20 -0.19 -78.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181444287.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.322 kcal (2) G-P(sol) polarization free energy of solvation -78.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds