Wall clock time and date at job start Tue Mar 31 2020 22:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99839 * 2 1 4 4 C 1.53008 * 109.46875 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47136 * 304.99990 * 4 3 2 6 6 C 1.52994 * 109.46948 * 65.00364 * 4 3 2 7 7 C 1.50697 * 109.46880 * 185.00196 * 4 3 2 8 8 O 1.21281 * 120.00349 * 343.99661 * 7 4 3 9 9 N 1.34774 * 119.99933 * 163.99823 * 7 4 3 10 10 C 1.46726 * 125.24601 * 184.73243 * 9 7 4 11 11 C 1.54033 * 106.57933 * 160.86331 * 10 9 7 12 12 C 1.53889 * 103.86141 * 28.01072 * 11 10 9 13 13 H 1.09005 * 111.74765 * 95.30675 * 12 11 10 14 14 C 1.53561 * 110.01305 * 220.91727 * 12 11 10 15 15 N 1.47906 * 106.90025 * 118.33320 * 14 12 11 16 16 C 1.46901 * 110.99926 * 211.76550 * 15 14 12 17 17 C 1.50711 * 109.46706 * 301.71438 * 16 15 14 18 18 O 1.21291 * 119.99972 * 2.32163 * 17 16 15 19 19 N 1.34778 * 119.99825 * 182.32325 * 17 16 15 20 20 C 1.37096 * 119.99937 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99919 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00211 * 179.97438 * 20 19 17 23 23 N 1.31418 * 119.99818 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00306 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47011 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46941 * 119.99893 * 24 22 20 27 27 H 1.48497 * 109.47220 * 240.00062 * 24 22 20 28 28 C 1.48333 * 105.72242 * 332.21362 * 15 14 12 29 29 C 1.46860 * 125.28678 * 4.70943 * 9 7 4 30 30 H 1.09002 * 112.58379 * 58.11544 * 29 9 7 31 31 H 1.09001 * 109.46863 * 59.99616 * 1 2 3 32 32 H 1.08993 * 109.47081 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47038 * 300.00423 * 1 2 3 34 34 H 1.09003 * 109.46949 * 60.00438 * 3 2 1 35 35 H 1.08995 * 109.47592 * 300.00139 * 3 2 1 36 36 H 1.09001 * 109.47394 * 186.65562 * 6 4 3 37 37 H 1.09008 * 109.46919 * 306.65743 * 6 4 3 38 38 H 1.09000 * 109.47470 * 66.65660 * 6 4 3 39 39 H 1.08999 * 110.04336 * 41.57061 * 10 9 7 40 40 H 1.09000 * 110.04408 * 280.15947 * 10 9 7 41 41 H 1.09005 * 110.54779 * 146.60697 * 11 10 9 42 42 H 1.08994 * 110.55271 * 269.41602 * 11 10 9 43 43 H 1.09000 * 109.97370 * 237.68974 * 14 12 11 44 44 H 1.09001 * 109.97208 * 358.97017 * 14 12 11 45 45 H 1.09000 * 109.47790 * 61.71078 * 16 15 14 46 46 H 1.08998 * 109.47530 * 181.72223 * 16 15 14 47 47 H 0.96999 * 119.99783 * 359.97438 * 19 17 16 48 48 H 0.97000 * 120.00199 * 180.02562 * 23 22 20 49 49 H 1.09001 * 110.52779 * 279.99944 * 28 15 14 50 50 H 1.08999 * 110.53393 * 157.23889 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8508 0.5685 0.8427 6 6 3.9963 0.5365 -1.3064 7 6 4.1479 2.5560 0.1245 8 8 3.4741 3.5423 -0.0852 9 7 5.4445 2.6864 0.4684 10 6 6.1307 3.9592 0.7173 11 6 7.3969 3.6247 1.5281 12 6 7.7405 2.1874 1.0989 13 1 8.4782 2.1709 0.2966 14 6 8.1835 1.3664 2.3187 15 7 7.2153 0.2579 2.4655 16 6 7.0450 -0.1086 3.8778 17 6 8.3781 -0.5058 4.4580 18 8 9.3788 -0.4451 3.7754 19 7 8.4581 -0.9283 5.7353 20 6 9.6708 -1.2891 6.2632 21 1 10.5620 -1.2351 5.6554 22 6 9.7535 -1.7242 7.5802 23 7 8.6693 -1.7894 8.3200 24 14 11.4058 -2.2164 8.2993 25 1 12.4625 -2.0530 7.2689 26 1 11.7151 -1.3517 9.4663 27 1 11.3533 -3.6352 8.7346 28 6 5.9429 0.7565 1.8887 29 6 6.3892 1.5770 0.6523 30 1 6.4883 0.9592 -0.2402 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.6886 1.8464 0.8901 35 1 1.6886 1.8464 -0.8899 36 1 5.0677 0.3423 -1.2578 37 1 3.4631 -0.4028 -1.4539 38 1 3.7862 1.2081 -2.1388 39 1 5.4856 4.6256 1.2899 40 1 6.4051 4.4268 -0.2283 41 1 8.2079 4.3056 1.2693 42 1 7.1885 3.6653 2.5971 43 1 9.1845 0.9673 2.1553 44 1 8.1725 1.9912 3.2119 45 1 6.6482 0.7438 4.4293 46 1 6.3514 -0.9460 3.9548 47 1 7.6578 -0.9764 6.2813 48 1 8.7270 -2.0928 9.2395 49 1 5.4233 1.3945 2.6035 50 1 5.3081 -0.0763 1.5861 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187296386.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:24 Heat of formation + Delta-G solvation = -100.777993 kcal Electronic energy + Delta-G solvation = -30667.433311 eV Core-core repulsion = 26501.986558 eV Total energy + Delta-G solvation = -4165.446753 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.10989 -39.29088 -38.21756 -37.78057 -35.60191 -34.16055 -33.87838 -32.12182 -31.28487 -30.22109 -27.75542 -27.54189 -26.57771 -26.07705 -24.30796 -24.30308 -21.67151 -21.32975 -20.51860 -19.46887 -18.95674 -17.85814 -17.75989 -16.71990 -16.34487 -16.02269 -15.95149 -15.61312 -15.19739 -15.03931 -14.90741 -14.69336 -14.32290 -13.97474 -13.87786 -13.62699 -13.36525 -13.06985 -12.99818 -12.78760 -12.60816 -12.43360 -12.07004 -12.06441 -12.01444 -11.79938 -11.55079 -11.47746 -11.26917 -11.23568 -11.08357 -10.91510 -10.79272 -10.71043 -10.36261 -10.25448 -10.00635 -9.90907 -9.53567 -8.91670 -8.51036 -8.04145 -7.96382 -6.44633 -3.85570 2.34932 2.59804 3.14167 3.25155 3.31911 3.50078 3.85314 3.98753 4.09485 4.16741 4.37558 4.43717 4.52171 4.64133 4.74096 4.85099 4.95614 5.01705 5.04052 5.05851 5.10668 5.13109 5.22093 5.31413 5.34743 5.37132 5.39137 5.45289 5.51668 5.54183 5.61376 5.64932 5.67782 5.75867 5.84216 5.86177 5.93497 5.96987 6.02979 6.19407 6.22769 6.50202 6.83761 7.07537 7.13268 7.27026 7.52655 7.89161 8.02735 8.57754 9.14816 9.50603 10.01599 10.73091 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014730 B = 0.002527 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.414045 B =11079.442698 C =12332.773224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.081 3.919 4 C -0.114 4.114 5 H 0.110 0.890 6 C -0.141 4.141 7 C 0.540 3.460 8 O -0.544 6.544 9 N -0.608 5.608 10 C 0.109 3.891 11 C -0.128 4.128 12 C -0.105 4.105 13 H 0.098 0.902 14 C 0.055 3.945 15 N -0.489 5.489 16 C 0.036 3.964 17 C 0.443 3.557 18 O -0.581 6.581 19 N -0.563 5.563 20 C -0.298 4.298 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 C 0.018 3.982 29 C 0.128 3.872 30 H 0.104 0.896 31 H 0.041 0.959 32 H 0.087 0.913 33 H 0.041 0.959 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.107 0.893 44 H 0.045 0.955 45 H 0.049 0.951 46 H 0.091 0.909 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.049 0.951 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.260 7.744 -15.899 21.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C 0.004 3.996 4 C -0.135 4.135 5 H 0.127 0.873 6 C -0.198 4.198 7 C 0.329 3.671 8 O -0.421 6.421 9 N -0.342 5.342 10 C -0.013 4.013 11 C -0.166 4.166 12 C -0.125 4.125 13 H 0.116 0.884 14 C -0.072 4.072 15 N -0.213 5.213 16 C -0.095 4.095 17 C 0.229 3.771 18 O -0.465 6.465 19 N -0.199 5.199 20 C -0.428 4.428 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.542 5.542 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.111 4.111 29 C 0.024 3.976 30 H 0.122 0.878 31 H 0.060 0.940 32 H 0.106 0.894 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.095 0.905 43 H 0.125 0.875 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.109 0.891 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.067 0.933 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.745 7.612 -16.539 21.666 hybrid contribution -0.265 0.613 1.450 1.596 sum -12.011 8.225 -15.089 20.966 Atomic orbital electron populations 1.22735 0.80674 1.02809 1.00093 1.87821 1.19896 1.27645 1.95507 1.22195 0.91505 0.84390 1.01485 1.21301 0.95126 0.94471 1.02579 0.87255 1.21734 1.01953 1.01547 0.94571 1.20067 0.80252 0.90983 0.75773 1.90699 1.60790 1.40441 1.50218 1.48307 1.09112 1.08199 1.68549 1.21924 0.93464 0.86202 0.99753 1.22601 0.96883 0.96564 1.00558 1.22704 0.95803 0.94566 0.99408 0.88358 1.22921 0.99189 0.90528 0.94611 1.64553 1.05376 1.35624 1.15733 1.22102 0.98156 1.00913 0.88354 1.19659 0.89673 0.84662 0.83136 1.90487 1.37281 1.58862 1.59860 1.41859 1.10607 1.57428 1.09999 1.19740 0.87223 1.40326 0.95473 0.87820 1.25273 0.98951 0.97482 0.96265 1.69621 1.27989 1.47430 1.09187 0.85801 0.81619 0.78083 0.78856 1.19204 1.20788 1.20714 1.23794 0.93518 0.98269 0.95545 1.22615 0.88572 0.88106 0.98315 0.87790 0.94049 0.89446 0.93997 0.92770 0.92255 0.91656 0.90242 0.92336 0.90682 0.91517 0.89463 0.90482 0.87514 0.93655 0.93339 0.89061 0.77473 0.91891 0.93315 0.89440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.02 10.13 -35.23 -0.36 -4.37 16 3 C 0.08 0.84 4.65 37.16 0.17 1.01 16 4 C -0.11 -1.16 2.31 -91.77 -0.21 -1.37 16 5 H 0.11 1.10 5.12 -51.93 -0.27 0.83 16 6 C -0.14 -1.24 9.04 37.15 0.34 -0.90 16 7 C 0.54 6.55 6.89 -10.99 -0.08 6.47 16 8 O -0.54 -8.19 16.39 5.56 0.09 -8.10 16 9 N -0.61 -6.70 2.92 -162.76 -0.48 -7.17 16 10 C 0.11 1.10 6.82 -3.38 -0.02 1.07 16 11 C -0.13 -1.22 6.48 -25.73 -0.17 -1.39 16 12 C -0.11 -1.15 3.85 -88.88 -0.34 -1.49 16 13 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 14 C 0.06 0.82 4.89 -2.98 -0.01 0.81 16 15 N -0.49 -7.58 5.20 -232.33 -1.21 -8.79 16 16 C 0.04 0.63 5.32 -4.97 -0.03 0.60 16 17 C 0.44 10.07 7.53 -10.98 -0.08 9.99 16 18 O -0.58 -14.84 13.63 5.55 0.08 -14.76 16 19 N -0.56 -13.92 5.29 -10.96 -0.06 -13.98 16 20 C -0.30 -8.13 9.68 -14.93 -0.14 -8.28 16 21 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.23 13.05 55.50 0.72 -23.50 16 24 Si 0.93 20.74 29.55 -169.99 -5.02 15.72 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 C 0.02 0.21 4.84 -2.00 -0.01 0.21 16 29 C 0.13 1.36 3.45 -65.72 -0.23 1.14 16 30 H 0.10 1.02 6.26 -51.93 -0.33 0.69 16 31 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 36 H 0.06 0.53 6.00 -51.93 -0.31 0.22 16 37 H 0.08 0.68 7.66 -51.92 -0.40 0.29 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.80 8.13 -51.93 -0.42 0.37 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.80 7.33 -51.93 -0.38 0.42 16 43 H 0.11 1.89 6.73 -51.93 -0.35 1.54 16 44 H 0.05 0.71 6.84 -51.93 -0.36 0.36 16 45 H 0.05 0.77 7.98 -51.93 -0.41 0.36 16 46 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 47 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 48 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 49 H 0.05 0.61 7.82 -51.93 -0.41 0.20 16 50 H 0.09 0.98 6.51 -51.93 -0.34 0.64 16 LS Contribution 390.88 15.07 5.89 5.89 Total: -1.00 -32.00 390.88 -8.16 -40.16 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -8.02 Total: 9.20 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 0.20 Total: 9.71 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -1.02 Total: -53.45 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.19 Total: -27.23 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.00 -8.16 -40.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187296386.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.617 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds