Wall clock time and date at job start Tue Mar 31 2020 22:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 120.00366 * 2 1 4 4 O 1.42900 * 109.47020 * 135.00329 * 3 2 1 5 5 C 1.42903 * 113.99898 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.46985 * 330.00017 * 5 4 3 7 7 C 1.52999 * 109.47338 * 89.99874 * 5 4 3 8 8 C 1.50695 * 109.47105 * 210.00074 * 5 4 3 9 9 O 1.21288 * 120.00126 * 350.88512 * 8 5 4 10 10 N 1.34775 * 120.00346 * 170.88124 * 8 5 4 11 11 C 1.47021 * 125.65105 * 184.57341 * 10 8 5 12 12 C 1.54326 * 107.27312 * 178.97899 * 11 10 8 13 13 C 1.55160 * 102.94226 * 337.81034 * 12 11 10 14 14 H 1.08999 * 111.03275 * 277.41652 * 13 12 11 15 15 N 1.46897 * 111.00647 * 153.57662 * 13 12 11 16 16 C 1.46898 * 111.00183 * 59.11346 * 15 13 12 17 17 C 1.46895 * 110.99860 * 183.07036 * 15 13 12 18 18 C 1.50709 * 109.47237 * 169.99697 * 17 15 13 19 19 O 1.21294 * 119.99470 * 359.97438 * 18 17 15 20 20 N 1.34767 * 120.00250 * 179.97438 * 18 17 15 21 21 C 1.37102 * 120.00305 * 180.02562 * 20 18 17 22 22 H 1.08005 * 119.99460 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00531 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99693 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00009 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47537 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47107 * 120.00409 * 25 23 21 28 28 H 1.48502 * 109.47055 * 240.00090 * 25 23 21 29 29 C 1.47429 * 125.64772 * 4.62443 * 10 8 5 30 30 H 1.08000 * 119.99841 * 359.97438 * 1 2 3 31 31 H 1.08000 * 120.00323 * 179.97438 * 1 2 3 32 32 H 1.08005 * 120.00292 * 180.02562 * 2 1 3 33 33 H 1.09002 * 109.46468 * 15.00838 * 3 2 1 34 34 H 1.08997 * 109.47111 * 255.00625 * 3 2 1 35 35 H 1.09001 * 109.46992 * 185.11134 * 7 5 4 36 36 H 1.08994 * 109.47236 * 305.11193 * 7 5 4 37 37 H 1.08996 * 109.47217 * 65.11592 * 7 5 4 38 38 H 1.09000 * 109.88406 * 298.39542 * 11 10 8 39 39 H 1.09002 * 109.88299 * 59.56638 * 11 10 8 40 40 H 1.08998 * 110.72118 * 219.44695 * 12 11 10 41 41 H 1.08997 * 110.72239 * 96.16849 * 12 11 10 42 42 H 1.08997 * 109.47184 * 189.07505 * 16 15 13 43 43 H 1.09001 * 109.46615 * 309.07654 * 16 15 13 44 44 H 1.08998 * 109.46975 * 69.07121 * 16 15 13 45 45 H 1.09001 * 109.47872 * 50.00107 * 17 15 13 46 46 H 1.08997 * 109.47265 * 289.99754 * 17 15 13 47 47 H 0.97000 * 120.00089 * 0.02562 * 20 18 17 48 48 H 0.97001 * 119.99631 * 179.97438 * 24 23 21 49 49 H 1.08993 * 110.36874 * 85.24920 * 29 10 8 50 50 H 1.09004 * 110.36327 * 322.92283 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1268 1.2411 0.9526 5 6 3.9079 2.4351 1.0328 6 1 3.9129 2.9318 0.0626 7 6 3.3032 3.3707 2.0816 8 6 5.3202 2.0859 1.4257 9 8 5.5902 0.9573 1.7782 10 7 6.2834 3.0278 1.3853 11 6 7.7124 2.8039 1.6485 12 6 8.4303 4.1572 1.4615 13 6 7.4521 4.9468 0.5520 14 1 7.5920 4.6817 -0.4960 15 7 7.6010 6.3946 0.7505 16 6 8.9722 6.8287 0.4518 17 6 6.6253 7.1396 -0.0563 18 6 6.6390 8.5903 0.3519 19 8 7.3877 8.9663 1.2291 20 7 5.8196 9.4697 -0.2575 21 6 5.8325 10.7895 0.1135 22 1 6.4996 11.1245 0.8940 23 6 4.9880 11.6962 -0.5153 24 7 4.1766 11.2887 -1.4652 25 14 5.0051 13.4942 -0.0092 26 1 6.0000 13.6939 1.0750 27 1 5.3720 14.3339 -1.1778 28 1 3.6573 13.8844 0.4771 29 6 6.0783 4.4535 1.0709 30 1 -0.5400 0.9353 0.0004 31 1 -0.5401 -0.9353 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3855 2.1160 0.2661 34 1 2.4755 1.4867 -0.9926 35 1 3.8438 4.3172 2.0789 36 1 2.2543 3.5507 1.8463 37 1 3.3809 2.9107 3.0667 38 1 7.8501 2.4493 2.6699 39 1 8.1092 2.0734 0.9434 40 1 9.3911 4.0188 0.9658 41 1 8.5583 4.6614 2.4193 42 1 9.0996 7.8669 0.7585 43 1 9.6785 6.2002 0.9942 44 1 9.1558 6.7411 -0.6190 45 1 5.6296 6.7265 0.1046 46 1 6.8871 7.0565 -1.1111 47 1 5.2207 9.1688 -0.9587 48 1 3.5868 11.9216 -1.9039 49 1 5.7923 5.0025 1.9680 50 1 5.3182 4.5659 0.2977 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194396370.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:00 Heat of formation + Delta-G solvation = -75.330059 kcal Electronic energy + Delta-G solvation = -29903.620524 eV Core-core repulsion = 25739.277276 eV Total energy + Delta-G solvation = -4164.343248 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.56416 -39.07397 -38.25220 -37.45113 -35.45635 -34.37172 -33.88245 -32.24489 -31.30602 -30.39364 -28.99129 -27.93179 -26.55980 -25.02857 -24.95651 -23.67157 -22.38363 -20.50704 -20.33754 -19.57302 -19.13915 -17.91790 -17.74948 -17.08031 -16.51699 -16.32544 -15.96740 -15.47059 -15.35982 -14.74663 -14.70857 -14.61190 -14.15790 -13.99938 -13.80072 -13.68845 -13.44436 -13.24817 -13.16868 -12.95932 -12.80103 -12.43108 -12.27135 -12.12709 -11.83372 -11.77921 -11.58000 -11.41995 -11.34436 -11.24419 -11.09588 -11.00039 -10.87540 -10.46273 -10.38251 -10.27401 -9.79701 -9.61185 -9.54271 -8.84724 -8.56613 -8.05512 -7.95471 -6.47187 -3.87932 1.77715 2.41755 2.50861 3.12353 3.23653 3.30304 3.51618 3.82975 3.86730 4.13264 4.24723 4.27031 4.52060 4.59008 4.68099 4.69910 4.81280 4.89012 4.99461 5.01526 5.07289 5.10604 5.15219 5.20197 5.33987 5.36202 5.42656 5.52012 5.53643 5.59071 5.61087 5.70333 5.74944 5.80113 5.86545 5.87579 6.00434 6.04210 6.20550 6.22319 6.29044 6.48880 6.77775 7.10017 7.24345 7.27563 7.50587 7.97302 8.01015 8.55816 9.13073 9.48484 9.99966 10.70549 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010369 B = 0.002552 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.627782 B =10970.874764 C =13248.486116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.149 4.149 3 C 0.084 3.916 4 O -0.355 6.355 5 C 0.075 3.925 6 H 0.086 0.914 7 C -0.174 4.174 8 C 0.533 3.467 9 O -0.522 6.522 10 N -0.616 5.616 11 C 0.112 3.888 12 C -0.123 4.123 13 C 0.068 3.932 14 H 0.057 0.943 15 N -0.507 5.507 16 C 0.022 3.978 17 C 0.043 3.957 18 C 0.444 3.556 19 O -0.576 6.576 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 C 0.102 3.898 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.062 0.938 44 H 0.017 0.983 45 H 0.087 0.913 46 H 0.049 0.951 47 H 0.391 0.609 48 H 0.271 0.729 49 H 0.090 0.910 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.626 -18.180 -0.142 18.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.167 4.167 3 C 0.008 3.992 4 O -0.273 6.273 5 C 0.014 3.986 6 H 0.104 0.896 7 C -0.232 4.232 8 C 0.320 3.680 9 O -0.396 6.396 10 N -0.353 5.353 11 C -0.010 4.010 12 C -0.161 4.161 13 C -0.042 4.042 14 H 0.074 0.926 15 N -0.231 5.231 16 C -0.125 4.125 17 C -0.089 4.089 18 C 0.229 3.771 19 O -0.460 6.460 20 N -0.201 5.201 21 C -0.427 4.427 22 H 0.122 0.878 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 C -0.021 4.021 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.135 0.865 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.111 0.889 42 H 0.117 0.883 43 H 0.080 0.920 44 H 0.035 0.965 45 H 0.105 0.895 46 H 0.067 0.933 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.108 0.892 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.238 -18.559 1.145 18.636 hybrid contribution -0.428 0.849 -1.428 1.716 sum -1.666 -17.710 -0.284 17.791 Atomic orbital electron populations 1.23852 0.95496 1.02366 0.99962 1.22709 0.95587 0.98130 1.00289 1.21690 0.88976 0.96282 0.92240 1.88056 1.43953 1.35054 1.60216 1.21835 0.89139 0.87275 1.00337 0.89621 1.22287 1.02094 0.99245 0.99563 1.19996 0.85718 0.84179 0.78088 1.90720 1.82250 1.20469 1.46205 1.48344 1.07909 1.09042 1.69959 1.21935 0.79705 0.97705 1.01678 1.22741 0.97969 0.93804 1.01604 1.22781 0.94567 0.89092 0.97724 0.92565 1.61641 1.05039 1.00698 1.55724 1.22560 0.87863 1.04265 0.97831 1.21944 0.96745 0.94850 0.95338 1.19669 0.84928 0.86459 0.86036 1.90490 1.42706 1.79286 1.33554 1.41867 1.35579 1.08052 1.34556 1.19741 1.20971 0.82869 1.19147 0.87830 1.25257 0.95997 1.00570 0.96113 1.69615 1.24055 1.36031 1.24604 0.85812 0.78192 0.81891 0.78538 1.19202 1.20783 1.20729 1.22514 0.97736 0.80508 1.01391 0.88312 0.87733 0.86467 0.92306 0.92086 0.90263 0.90907 0.91074 0.91034 0.91395 0.89936 0.88947 0.88253 0.91963 0.96476 0.89515 0.93287 0.77543 0.91911 0.89211 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.26 14.31 29.02 0.42 -0.84 16 2 C -0.15 -1.28 9.89 -36.02 -0.36 -1.64 16 3 C 0.08 0.76 6.16 36.01 0.22 0.98 16 4 O -0.35 -4.35 9.52 -54.97 -0.52 -4.87 16 5 C 0.08 0.81 2.46 -27.89 -0.07 0.74 16 6 H 0.09 0.74 7.17 -51.93 -0.37 0.37 16 7 C -0.17 -1.64 9.36 37.16 0.35 -1.29 16 8 C 0.53 7.06 7.20 -10.99 -0.08 6.98 16 9 O -0.52 -8.94 16.86 -14.19 -0.24 -9.18 16 10 N -0.62 -7.01 3.33 -170.52 -0.57 -7.57 16 11 C 0.11 1.16 6.87 -3.06 -0.02 1.14 16 12 C -0.12 -1.18 5.19 -24.89 -0.13 -1.31 16 13 C 0.07 0.75 2.71 -65.56 -0.18 0.57 16 14 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 15 N -0.51 -7.32 4.40 -233.75 -1.03 -8.35 16 16 C 0.02 0.32 9.06 60.06 0.54 0.87 16 17 C 0.04 0.67 5.34 -4.97 -0.03 0.65 16 18 C 0.44 9.71 7.54 -10.99 -0.08 9.63 16 19 O -0.58 -14.55 13.88 5.54 0.08 -14.47 16 20 N -0.56 -13.48 5.29 -10.96 -0.06 -13.54 16 21 C -0.30 -7.95 9.68 -14.93 -0.14 -8.10 16 22 H 0.10 2.92 7.16 -52.48 -0.38 2.54 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -23.68 13.05 55.50 0.72 -22.95 16 25 Si 0.93 20.41 29.55 -169.99 -5.02 15.39 16 26 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 29 C 0.10 1.06 3.94 -2.53 -0.01 1.05 16 30 H 0.10 0.60 7.90 -52.49 -0.41 0.19 16 31 H 0.10 0.60 8.06 -52.49 -0.42 0.17 16 32 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 33 H 0.06 0.45 7.50 -51.93 -0.39 0.06 16 34 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 35 H 0.08 0.70 6.01 -51.93 -0.31 0.39 16 36 H 0.07 0.59 7.78 -51.93 -0.40 0.19 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.67 7.90 -51.93 -0.41 0.26 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.10 1.79 5.99 -51.93 -0.31 1.48 16 43 H 0.06 0.74 6.68 -51.93 -0.35 0.39 16 44 H 0.02 0.23 8.08 -51.93 -0.42 -0.19 16 45 H 0.09 1.19 6.81 -51.93 -0.35 0.84 16 46 H 0.05 0.72 8.07 -51.93 -0.42 0.30 16 47 H 0.39 8.93 7.90 -40.82 -0.32 8.61 16 48 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 49 H 0.09 1.01 7.49 -51.93 -0.39 0.63 16 50 H 0.08 0.68 6.85 -51.93 -0.36 0.32 16 LS Contribution 404.92 15.07 6.10 6.10 Total: -1.00 -32.93 404.92 -8.31 -41.24 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -8.11 Total: 8.29 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 0.34 Total: 9.92 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.93 Total: -52.41 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.69 Total: -28.52 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.93 -8.31 -41.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194396370.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.093 kcal (2) G-P(sol) polarization free energy of solvation -32.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds