Wall clock time and date at job start Tue Mar 31 2020 22:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 120.00366 * 2 1 4 4 O 1.42900 * 109.47020 * 135.00329 * 3 2 1 5 5 C 1.42903 * 113.99898 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.46985 * 330.00017 * 5 4 3 7 7 C 1.52999 * 109.47338 * 89.99874 * 5 4 3 8 8 C 1.50695 * 109.47105 * 210.00074 * 5 4 3 9 9 O 1.21288 * 120.00126 * 350.88512 * 8 5 4 10 10 N 1.34775 * 120.00346 * 170.88124 * 8 5 4 11 11 C 1.47021 * 125.65105 * 184.57341 * 10 8 5 12 12 C 1.54326 * 107.27312 * 178.97899 * 11 10 8 13 13 C 1.55160 * 102.94226 * 337.81034 * 12 11 10 14 14 H 1.08999 * 111.03275 * 277.41652 * 13 12 11 15 15 N 1.46897 * 111.00647 * 153.57662 * 13 12 11 16 16 C 1.46898 * 111.00183 * 59.11346 * 15 13 12 17 17 C 1.46895 * 110.99860 * 183.07036 * 15 13 12 18 18 C 1.50709 * 109.47237 * 169.99697 * 17 15 13 19 19 O 1.21294 * 119.99470 * 359.97438 * 18 17 15 20 20 N 1.34767 * 120.00250 * 179.97438 * 18 17 15 21 21 C 1.37102 * 120.00305 * 180.02562 * 20 18 17 22 22 H 1.08005 * 119.99460 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00531 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99693 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00009 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47537 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47107 * 120.00409 * 25 23 21 28 28 H 1.48502 * 109.47055 * 240.00090 * 25 23 21 29 29 C 1.47429 * 125.64772 * 4.62443 * 10 8 5 30 30 H 1.08000 * 119.99841 * 359.97438 * 1 2 3 31 31 H 1.08000 * 120.00323 * 179.97438 * 1 2 3 32 32 H 1.08005 * 120.00292 * 180.02562 * 2 1 3 33 33 H 1.09002 * 109.46468 * 15.00838 * 3 2 1 34 34 H 1.08997 * 109.47111 * 255.00625 * 3 2 1 35 35 H 1.09001 * 109.46992 * 185.11134 * 7 5 4 36 36 H 1.08994 * 109.47236 * 305.11193 * 7 5 4 37 37 H 1.08996 * 109.47217 * 65.11592 * 7 5 4 38 38 H 1.09000 * 109.88406 * 298.39542 * 11 10 8 39 39 H 1.09002 * 109.88299 * 59.56638 * 11 10 8 40 40 H 1.08998 * 110.72118 * 219.44695 * 12 11 10 41 41 H 1.08997 * 110.72239 * 96.16849 * 12 11 10 42 42 H 1.08997 * 109.47184 * 189.07505 * 16 15 13 43 43 H 1.09001 * 109.46615 * 309.07654 * 16 15 13 44 44 H 1.08998 * 109.46975 * 69.07121 * 16 15 13 45 45 H 1.09001 * 109.47872 * 50.00107 * 17 15 13 46 46 H 1.08997 * 109.47265 * 289.99754 * 17 15 13 47 47 H 0.97000 * 120.00089 * 0.02562 * 20 18 17 48 48 H 0.97001 * 119.99631 * 179.97438 * 24 23 21 49 49 H 1.08993 * 110.36874 * 85.24920 * 29 10 8 50 50 H 1.09004 * 110.36327 * 322.92283 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1268 1.2411 0.9526 5 6 3.9079 2.4351 1.0328 6 1 3.9129 2.9318 0.0626 7 6 3.3032 3.3707 2.0816 8 6 5.3202 2.0859 1.4257 9 8 5.5902 0.9573 1.7782 10 7 6.2834 3.0278 1.3853 11 6 7.7124 2.8039 1.6485 12 6 8.4303 4.1572 1.4615 13 6 7.4521 4.9468 0.5520 14 1 7.5920 4.6817 -0.4960 15 7 7.6010 6.3946 0.7505 16 6 8.9722 6.8287 0.4518 17 6 6.6253 7.1396 -0.0563 18 6 6.6390 8.5903 0.3519 19 8 7.3877 8.9663 1.2291 20 7 5.8196 9.4697 -0.2575 21 6 5.8325 10.7895 0.1135 22 1 6.4996 11.1245 0.8940 23 6 4.9880 11.6962 -0.5153 24 7 4.1766 11.2887 -1.4652 25 14 5.0051 13.4942 -0.0092 26 1 6.0000 13.6939 1.0750 27 1 5.3720 14.3339 -1.1778 28 1 3.6573 13.8844 0.4771 29 6 6.0783 4.4535 1.0709 30 1 -0.5400 0.9353 0.0004 31 1 -0.5401 -0.9353 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3855 2.1160 0.2661 34 1 2.4755 1.4867 -0.9926 35 1 3.8438 4.3172 2.0789 36 1 2.2543 3.5507 1.8463 37 1 3.3809 2.9107 3.0667 38 1 7.8501 2.4493 2.6699 39 1 8.1092 2.0734 0.9434 40 1 9.3911 4.0188 0.9658 41 1 8.5583 4.6614 2.4193 42 1 9.0996 7.8669 0.7585 43 1 9.6785 6.2002 0.9942 44 1 9.1558 6.7411 -0.6190 45 1 5.6296 6.7265 0.1046 46 1 6.8871 7.0565 -1.1111 47 1 5.2207 9.1688 -0.9587 48 1 3.5868 11.9216 -1.9039 49 1 5.7923 5.0025 1.9680 50 1 5.3182 4.5659 0.2977 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194396370.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:59 Heat of formation + Delta-G solvation = -98.349753 kcal Electronic energy + Delta-G solvation = -29904.618733 eV Core-core repulsion = 25739.277276 eV Total energy + Delta-G solvation = -4165.341456 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.50819 -40.37610 -39.41135 -38.54521 -36.68059 -35.72763 -35.01785 -33.25634 -33.06063 -31.28302 -29.91093 -29.26802 -27.22449 -26.70583 -25.85190 -24.86849 -23.28572 -21.41280 -21.08361 -20.88531 -20.33027 -19.79389 -18.62130 -18.01969 -17.66070 -17.34302 -17.00336 -16.54114 -16.46545 -16.26870 -15.98579 -15.74190 -15.38608 -15.15287 -15.04049 -14.74145 -14.43477 -14.27761 -14.02255 -13.86333 -13.74571 -13.58890 -13.38373 -13.31720 -13.04461 -12.95313 -12.72861 -12.62424 -12.46539 -12.39617 -12.32530 -12.10388 -11.90782 -11.82879 -11.82282 -11.42469 -11.26131 -10.69209 -10.27196 -10.22942 -9.94833 -9.78329 -9.20454 -8.42865 -5.90131 1.16796 1.38574 1.43500 1.44533 1.57424 1.66727 2.11800 2.30682 2.64946 2.93033 3.24784 3.28494 3.40525 3.52010 3.76331 3.80002 3.93276 4.05127 4.09977 4.19821 4.20022 4.25177 4.35317 4.38981 4.44181 4.53339 4.55544 4.59271 4.62838 4.65930 4.72630 4.73339 4.78674 4.90177 4.91798 4.98454 5.13000 5.17009 5.18791 5.30179 5.46250 5.65521 5.69369 5.88989 6.05584 6.08606 6.22172 6.35112 6.66203 7.00549 7.18876 7.63156 8.19380 8.74642 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010369 B = 0.002552 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.627782 B =10970.874764 C =13248.486116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.176 4.176 3 C 0.080 3.920 4 O -0.384 6.384 5 C 0.076 3.924 6 H 0.112 0.888 7 C -0.169 4.169 8 C 0.527 3.473 9 O -0.571 6.571 10 N -0.611 5.611 11 C 0.110 3.890 12 C -0.113 4.113 13 C 0.071 3.929 14 H 0.073 0.927 15 N -0.522 5.522 16 C 0.027 3.973 17 C 0.054 3.946 18 C 0.443 3.557 19 O -0.613 6.613 20 N -0.576 5.576 21 C -0.326 4.326 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.987 3.013 26 H -0.274 1.274 27 H -0.273 1.273 28 H -0.272 1.272 29 C 0.101 3.899 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.107 0.893 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.057 0.943 43 H 0.086 0.914 44 H 0.029 0.971 45 H 0.114 0.886 46 H 0.070 0.930 47 H 0.396 0.604 48 H 0.276 0.724 49 H 0.083 0.917 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.420 -18.341 -1.232 18.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.194 4.194 3 C 0.005 3.995 4 O -0.303 6.303 5 C 0.015 3.985 6 H 0.130 0.870 7 C -0.227 4.227 8 C 0.316 3.684 9 O -0.449 6.449 10 N -0.346 5.346 11 C -0.013 4.013 12 C -0.151 4.151 13 C -0.038 4.038 14 H 0.091 0.909 15 N -0.247 5.247 16 C -0.121 4.121 17 C -0.077 4.077 18 C 0.231 3.769 19 O -0.499 6.499 20 N -0.213 5.213 21 C -0.456 4.456 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.562 5.562 25 Si 0.812 3.188 26 H -0.199 1.199 27 H -0.199 1.199 28 H -0.198 1.198 29 C -0.021 4.021 30 H 0.129 0.871 31 H 0.134 0.866 32 H 0.125 0.875 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.121 0.879 41 H 0.102 0.898 42 H 0.075 0.925 43 H 0.104 0.896 44 H 0.047 0.953 45 H 0.132 0.868 46 H 0.088 0.912 47 H 0.230 0.770 48 H 0.085 0.915 49 H 0.101 0.899 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.032 -18.715 0.036 18.825 hybrid contribution -0.149 0.837 -1.050 1.351 sum -2.181 -17.878 -1.014 18.039 Atomic orbital electron populations 1.24067 0.94961 1.03544 0.97582 1.22744 0.96272 0.97824 1.02545 1.21871 0.88583 0.96935 0.92141 1.88030 1.44923 1.36025 1.61321 1.21935 0.87517 0.87211 1.01822 0.87031 1.22264 1.03119 0.98952 0.98348 1.20544 0.86890 0.83661 0.77289 1.90691 1.83141 1.22465 1.48623 1.48380 1.08107 1.09210 1.68902 1.22014 0.79396 0.98305 1.01572 1.22696 0.98521 0.92736 1.01140 1.22808 0.95280 0.86773 0.98924 0.90914 1.61540 1.04660 1.02516 1.55962 1.22435 0.88582 1.02256 0.98824 1.21826 0.98804 0.90610 0.96422 1.20774 0.82954 0.88678 0.84543 1.90479 1.43749 1.80674 1.35014 1.41927 1.36545 1.07613 1.35262 1.19644 1.21621 0.84781 1.19566 0.90410 1.25941 0.95394 1.03927 0.95951 1.69665 1.24281 1.37242 1.24972 0.84948 0.78206 0.77535 0.78148 1.19899 1.19869 1.19783 1.22578 0.98152 0.79597 1.01811 0.87107 0.86550 0.87517 0.90778 0.91131 0.89518 0.89320 0.92684 0.91629 0.90876 0.87875 0.89788 0.92452 0.89584 0.95289 0.86803 0.91223 0.77006 0.91451 0.89922 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 14.31 67.79 0.97 -1.05 16 2 C -0.18 -2.88 9.89 25.65 0.25 -2.62 16 3 C 0.08 1.33 6.16 71.24 0.44 1.77 16 4 O -0.38 -9.15 9.52 -130.10 -1.24 -10.38 16 5 C 0.08 1.52 2.46 29.85 0.07 1.59 16 6 H 0.11 1.59 7.17 -2.39 -0.02 1.58 16 7 C -0.17 -2.91 9.36 71.98 0.67 -2.23 16 8 C 0.53 13.55 7.20 87.66 0.63 14.18 16 9 O -0.57 -19.80 16.86 15.82 0.27 -19.54 16 10 N -0.61 -12.86 3.33 -811.78 -2.70 -15.56 16 11 C 0.11 2.09 6.87 86.73 0.60 2.68 16 12 C -0.11 -1.88 5.19 31.78 0.17 -1.72 16 13 C 0.07 1.35 2.71 46.31 0.13 1.47 16 14 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 15 N -0.52 -13.92 4.40 -893.44 -3.93 -17.85 16 16 C 0.03 0.72 9.06 127.69 1.16 1.88 16 17 C 0.05 1.59 5.34 85.56 0.46 2.05 16 18 C 0.44 19.26 7.54 87.66 0.66 19.92 16 19 O -0.61 -31.51 13.88 -3.07 -0.04 -31.55 16 20 N -0.58 -27.56 5.29 -306.98 -1.62 -29.19 16 21 C -0.33 -17.70 9.68 84.04 0.81 -16.89 16 22 H 0.08 4.54 7.16 -2.91 -0.02 4.52 16 23 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 24 N -0.92 -47.72 13.05 21.66 0.28 -47.43 16 25 Si 0.99 41.66 29.55 68.60 2.03 43.69 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 27 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 28 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 29 C 0.10 1.83 3.94 86.86 0.34 2.18 16 30 H 0.11 1.08 7.90 -2.91 -0.02 1.06 16 31 H 0.12 1.11 8.06 -2.91 -0.02 1.09 16 32 H 0.11 1.91 8.06 -2.91 -0.02 1.88 16 33 H 0.07 0.96 7.50 -2.39 -0.02 0.94 16 34 H 0.07 0.99 8.09 -2.39 -0.02 0.97 16 35 H 0.09 1.34 6.01 -2.39 -0.01 1.32 16 36 H 0.09 1.23 7.78 -2.39 -0.02 1.21 16 37 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.10 1.33 7.90 -2.39 -0.02 1.31 16 41 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.06 2.07 5.99 -2.39 -0.01 2.06 16 43 H 0.09 1.86 6.68 -2.39 -0.02 1.85 16 44 H 0.03 0.70 8.08 -2.39 -0.02 0.68 16 45 H 0.11 2.74 6.81 -2.39 -0.02 2.72 16 46 H 0.07 1.81 8.07 -2.39 -0.02 1.79 16 47 H 0.40 17.88 7.90 -92.71 -0.73 17.15 16 48 H 0.28 13.43 8.31 -92.71 -0.77 12.66 16 49 H 0.08 1.68 7.49 -2.39 -0.02 1.66 16 50 H 0.10 1.36 6.85 -2.38 -0.02 1.35 16 Total: -1.00 -73.33 404.92 1.07 -72.25 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: 0.20 Total: 32.52 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: 7.83 Total: 23.04 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -7.97 Total: -110.03 kcal Atomic # 8 Polarization: -60.46 SS G_CDS: -1.01 Total: -61.48 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -73.33 1.07 -72.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194396370.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.096 kcal (2) G-P(sol) polarization free energy of solvation -73.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds