Wall clock time and date at job start Tue Mar 31 2020 22:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00091 * 2 1 4 4 O 1.42902 * 109.47142 * 134.99749 * 3 2 1 5 5 C 1.42897 * 114.00178 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47355 * 330.01061 * 5 4 3 7 7 C 1.53006 * 109.46716 * 90.00270 * 5 4 3 8 8 C 1.50696 * 109.47545 * 210.00417 * 5 4 3 9 9 O 1.21283 * 119.99889 * 347.60111 * 8 5 4 10 10 N 1.34782 * 120.00263 * 167.60505 * 8 5 4 11 11 C 1.47615 * 118.74543 * 354.31793 * 10 8 5 12 12 C 1.53797 * 111.25361 * 138.35120 * 11 10 8 13 13 C 1.51171 * 109.65718 * 319.84192 * 12 11 10 14 14 N 1.46203 * 109.03799 * 92.49621 * 13 12 11 15 15 C 1.46906 * 110.99570 * 144.77696 * 14 13 12 16 16 C 1.50693 * 109.47062 * 197.08246 * 15 14 13 17 17 O 1.21292 * 120.00311 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00103 * 180.02562 * 16 15 14 19 19 C 1.37101 * 120.00343 * 180.02562 * 18 16 15 20 20 H 1.08006 * 119.99482 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00291 * 179.97438 * 19 18 16 22 22 N 1.31417 * 120.00001 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 119.99937 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47097 * 90.00210 * 23 21 19 25 25 H 1.48507 * 109.47029 * 210.00329 * 23 21 19 26 26 H 1.48500 * 109.47085 * 329.99710 * 23 21 19 27 27 C 1.41440 * 116.34596 * 272.97460 * 14 13 12 28 28 C 1.44883 * 118.74719 * 174.29697 * 10 8 5 29 29 H 1.08001 * 119.99987 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99728 * 0.02562 * 1 2 3 31 31 H 1.08001 * 119.99728 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.47032 * 15.00109 * 3 2 1 33 33 H 1.09000 * 109.47229 * 254.99896 * 3 2 1 34 34 H 1.08996 * 109.47071 * 176.71244 * 7 5 4 35 35 H 1.09004 * 109.47285 * 296.71185 * 7 5 4 36 36 H 1.09001 * 109.47353 * 56.71222 * 7 5 4 37 37 H 1.08999 * 109.11360 * 258.79070 * 11 10 8 38 38 H 1.09002 * 109.10845 * 17.90999 * 11 10 8 39 39 H 1.08989 * 109.44462 * 79.97623 * 12 11 10 40 40 H 1.09002 * 109.44342 * 199.88278 * 12 11 10 41 41 H 1.09004 * 109.55851 * 332.63581 * 13 12 11 42 42 H 1.08994 * 109.63049 * 212.40874 * 13 12 11 43 43 H 1.09003 * 109.47220 * 317.08164 * 15 14 13 44 44 H 1.08994 * 109.47161 * 77.07876 * 15 14 13 45 45 H 0.96994 * 120.00015 * 359.97438 * 18 16 15 46 46 H 0.96994 * 119.99761 * 179.97438 * 22 21 19 47 47 H 1.09001 * 109.38684 * 303.32851 * 27 14 13 48 48 H 1.08997 * 109.38608 * 183.63921 * 27 14 13 49 49 H 1.09004 * 109.43638 * 29.79092 * 28 10 8 50 50 H 1.08999 * 109.43224 * 149.66103 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9085 2.4348 1.0321 6 1 3.9137 2.9310 0.0616 7 6 3.3042 3.3713 2.0804 8 6 5.3206 2.0852 1.4252 9 8 5.5783 0.9732 1.8352 10 7 6.2972 3.0083 1.3213 11 6 5.9806 4.3100 0.7015 12 6 6.6337 5.4687 1.4738 13 6 6.5318 5.2107 2.9598 14 7 7.7398 4.5195 3.4077 15 6 8.1205 4.9481 4.7603 16 6 9.5520 4.5595 5.0261 17 8 10.1921 3.9819 4.1729 18 7 10.1209 4.8528 6.2121 19 6 11.4234 4.4997 6.4538 20 1 11.9935 3.9861 5.6937 21 6 12.0100 4.8026 7.6764 22 7 13.2584 4.4637 7.9081 23 14 11.0242 5.6915 8.9906 24 1 10.3340 4.6961 9.8497 25 1 11.9380 6.5147 9.8229 26 1 10.0169 6.5705 8.3441 27 6 7.7297 3.1087 3.3071 28 6 7.6176 2.6852 1.8227 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3856 2.1160 0.2660 33 1 2.4756 1.4867 -0.9926 34 1 3.9329 4.2558 2.1828 35 1 2.3041 3.6707 1.7667 36 1 3.2451 2.8546 3.0383 37 1 6.3461 4.3147 -0.3253 38 1 4.8995 4.4491 0.6961 39 1 7.6828 5.5486 1.1894 40 1 6.1209 6.3999 1.2328 41 1 5.6597 4.5892 3.1634 42 1 6.4360 6.1580 3.4902 43 1 8.0168 6.0301 4.8413 44 1 7.4714 4.4652 5.4907 45 1 9.6090 5.3144 6.8946 46 1 13.6680 4.6755 8.7614 47 1 6.8790 2.7126 3.8616 48 1 8.6521 2.7093 3.7286 49 1 7.7849 1.6114 1.7382 50 1 8.3679 3.2157 1.2365 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198338002.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:36 Heat of formation + Delta-G solvation = -61.313800 kcal Electronic energy + Delta-G solvation = -30499.602778 eV Core-core repulsion = 26335.867321 eV Total energy + Delta-G solvation = -4163.735457 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.78804 -39.13569 -38.22607 -37.31117 -35.26726 -34.43121 -33.88551 -32.71853 -31.72647 -31.60723 -29.22609 -26.99182 -26.59442 -25.87887 -24.47945 -23.64681 -22.05372 -20.68775 -20.49042 -19.45726 -19.03903 -18.28286 -17.78921 -17.04803 -16.39597 -16.23031 -15.93001 -15.50469 -15.43826 -15.20324 -14.94811 -14.69361 -14.47717 -13.94483 -13.90062 -13.56386 -13.40297 -13.24374 -13.05900 -12.89495 -12.74453 -12.49163 -12.45456 -12.19975 -11.91845 -11.79156 -11.56201 -11.47812 -11.35885 -11.24474 -11.00158 -10.97194 -10.91581 -10.59126 -10.46164 -9.96780 -9.77325 -9.59419 -9.50349 -8.75070 -8.52088 -8.16688 -7.81799 -6.30194 -3.81427 1.71613 2.46864 2.66354 3.02612 3.07293 3.15440 3.52235 3.74614 3.90089 4.10946 4.16724 4.41359 4.55047 4.57033 4.61889 4.74572 4.74664 4.80679 4.90887 4.97538 5.03992 5.13438 5.19344 5.22048 5.26130 5.35974 5.42457 5.45807 5.50273 5.58373 5.67236 5.68967 5.74660 5.79544 5.82790 5.93721 6.12443 6.15544 6.15976 6.21299 6.30282 6.56309 6.76563 7.21953 7.25197 7.59619 7.66341 8.09136 8.15797 8.61105 8.96279 9.43539 9.84220 10.82933 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022382 B = 0.002192 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.695003 B =12770.493764 C =12928.516115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.149 4.149 3 C 0.085 3.915 4 O -0.353 6.353 5 C 0.071 3.929 6 H 0.083 0.917 7 C -0.175 4.175 8 C 0.508 3.492 9 O -0.516 6.516 10 N -0.604 5.604 11 C 0.100 3.900 12 C -0.133 4.133 13 C 0.070 3.930 14 N -0.540 5.540 15 C 0.051 3.949 16 C 0.451 3.549 17 O -0.559 6.559 18 N -0.591 5.591 19 C -0.303 4.303 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.060 3.940 28 C 0.121 3.879 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.047 0.953 45 H 0.370 0.630 46 H 0.273 0.727 47 H 0.015 0.985 48 H 0.112 0.888 49 H 0.088 0.912 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.742 2.390 -15.512 30.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.167 4.167 3 C 0.009 3.991 4 O -0.271 6.271 5 C 0.010 3.990 6 H 0.101 0.899 7 C -0.233 4.233 8 C 0.294 3.706 9 O -0.390 6.390 10 N -0.339 5.339 11 C -0.022 4.022 12 C -0.171 4.171 13 C -0.057 4.057 14 N -0.264 5.264 15 C -0.080 4.080 16 C 0.237 3.763 17 O -0.440 6.440 18 N -0.231 5.231 19 C -0.432 4.432 20 H 0.138 0.862 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.069 4.069 28 C -0.001 4.001 29 H 0.123 0.877 30 H 0.115 0.885 31 H 0.136 0.864 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.056 0.944 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.065 0.935 45 H 0.202 0.798 46 H 0.084 0.916 47 H 0.033 0.967 48 H 0.130 0.870 49 H 0.107 0.893 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -24.599 1.341 -15.916 29.330 hybrid contribution -1.304 0.856 1.558 2.204 sum -25.903 2.197 -14.358 29.697 Atomic orbital electron populations 1.23836 0.95474 1.02300 1.00161 1.22733 0.95604 0.98243 1.00088 1.21666 0.89007 0.96188 0.92249 1.88102 1.43869 1.35085 1.60049 1.21938 0.89913 0.87262 0.99904 0.89940 1.22353 1.01612 0.99286 1.00021 1.20399 0.86321 0.85033 0.78817 1.90729 1.82642 1.21004 1.44635 1.47894 1.10803 1.14730 1.60495 1.22177 1.00438 0.82892 0.96734 1.21883 1.03281 0.96677 0.95302 1.21565 0.90552 0.98121 0.95496 1.57782 1.34697 1.09464 1.24491 1.21861 0.95851 1.00905 0.89364 1.19714 0.88286 0.85071 0.83278 1.90524 1.64084 1.44464 1.44973 1.42228 1.13316 1.53644 1.13880 1.19425 0.86204 1.35740 1.01849 0.86248 1.25038 0.95842 0.97860 0.97454 1.69622 1.11646 1.46332 1.24543 0.86677 0.80148 0.80159 0.82420 1.19679 1.20207 1.19532 1.21821 1.02488 0.86572 0.96061 1.21622 0.82220 1.01760 0.94534 0.87694 0.88451 0.86358 0.92594 0.92198 0.90330 0.91208 0.90860 0.91410 0.90239 0.89323 0.90294 0.94401 0.91021 0.89347 0.93484 0.79778 0.91642 0.96655 0.86979 0.89349 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.11 14.31 29.01 0.42 -0.70 16 2 C -0.15 -1.18 9.89 -36.03 -0.36 -1.53 16 3 C 0.09 0.68 6.16 36.00 0.22 0.90 16 4 O -0.35 -4.15 9.53 -54.83 -0.52 -4.67 16 5 C 0.07 0.70 2.27 -27.88 -0.06 0.64 16 6 H 0.08 0.57 6.75 -51.93 -0.35 0.22 16 7 C -0.18 -1.38 9.10 37.16 0.34 -1.04 16 8 C 0.51 6.84 6.94 -10.99 -0.08 6.77 16 9 O -0.52 -9.37 15.95 -14.04 -0.22 -9.59 16 10 N -0.60 -7.14 2.18 -172.45 -0.38 -7.52 16 11 C 0.10 0.80 5.41 -3.02 -0.02 0.78 16 12 C -0.13 -1.14 5.77 -27.24 -0.16 -1.30 16 13 C 0.07 0.77 5.32 -5.12 -0.03 0.74 16 14 N -0.54 -8.16 3.60 -241.00 -0.87 -9.03 16 15 C 0.05 0.83 5.44 -4.98 -0.03 0.81 16 16 C 0.45 10.02 7.37 -10.99 -0.08 9.94 16 17 O -0.56 -14.45 13.96 5.55 0.08 -14.38 16 18 N -0.59 -13.94 5.09 -10.97 -0.06 -14.00 16 19 C -0.30 -8.53 10.16 -14.93 -0.15 -8.68 16 20 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -25.76 13.96 55.50 0.77 -24.99 16 23 Si 0.88 19.36 27.74 -169.99 -4.71 14.65 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 27 C 0.06 0.99 5.01 -5.74 -0.03 0.96 16 28 C 0.12 1.75 5.56 -3.97 -0.02 1.72 16 29 H 0.10 0.53 8.06 -52.49 -0.42 0.11 16 30 H 0.10 0.48 7.90 -52.49 -0.41 0.07 16 31 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 16 33 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 34 H 0.08 0.53 4.79 -51.93 -0.25 0.28 16 35 H 0.07 0.40 7.95 -51.93 -0.41 -0.01 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.46 4.27 -51.93 -0.22 0.24 16 39 H 0.09 0.95 7.98 -51.93 -0.41 0.53 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.04 0.41 5.88 -51.93 -0.31 0.11 16 42 H 0.07 0.69 7.36 -51.93 -0.38 0.31 16 43 H 0.09 1.24 7.57 -51.93 -0.39 0.84 16 44 H 0.05 0.71 8.11 -51.93 -0.42 0.29 16 45 H 0.37 7.68 5.76 -40.82 -0.24 7.44 16 46 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 47 H 0.02 0.26 8.12 -51.93 -0.42 -0.16 16 48 H 0.11 2.24 5.61 -51.93 -0.29 1.95 16 49 H 0.09 1.39 7.21 -51.93 -0.37 1.01 16 50 H 0.09 1.26 8.11 -51.93 -0.42 0.84 16 LS Contribution 392.32 15.07 5.91 5.91 Total: -1.00 -35.45 392.32 -7.92 -43.37 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -7.80 Total: 9.22 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: -0.13 Total: 11.02 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.53 Total: -55.53 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.67 Total: -28.64 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.71 Total: 14.65 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.45 -7.92 -43.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198338002.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.941 kcal (2) G-P(sol) polarization free energy of solvation -35.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds