Wall clock time and date at job start Tue Mar 31 2020 22:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00091 * 2 1 4 4 O 1.42902 * 109.47142 * 134.99749 * 3 2 1 5 5 C 1.42897 * 114.00178 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47355 * 330.01061 * 5 4 3 7 7 C 1.53006 * 109.46716 * 90.00270 * 5 4 3 8 8 C 1.50696 * 109.47545 * 210.00417 * 5 4 3 9 9 O 1.21283 * 119.99889 * 347.60111 * 8 5 4 10 10 N 1.34782 * 120.00263 * 167.60505 * 8 5 4 11 11 C 1.47615 * 118.74543 * 354.31793 * 10 8 5 12 12 C 1.53797 * 111.25361 * 138.35120 * 11 10 8 13 13 C 1.51171 * 109.65718 * 319.84192 * 12 11 10 14 14 N 1.46203 * 109.03799 * 92.49621 * 13 12 11 15 15 C 1.46906 * 110.99570 * 144.77696 * 14 13 12 16 16 C 1.50693 * 109.47062 * 197.08246 * 15 14 13 17 17 O 1.21292 * 120.00311 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00103 * 180.02562 * 16 15 14 19 19 C 1.37101 * 120.00343 * 180.02562 * 18 16 15 20 20 H 1.08006 * 119.99482 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00291 * 179.97438 * 19 18 16 22 22 N 1.31417 * 120.00001 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 119.99937 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47097 * 90.00210 * 23 21 19 25 25 H 1.48507 * 109.47029 * 210.00329 * 23 21 19 26 26 H 1.48500 * 109.47085 * 329.99710 * 23 21 19 27 27 C 1.41440 * 116.34596 * 272.97460 * 14 13 12 28 28 C 1.44883 * 118.74719 * 174.29697 * 10 8 5 29 29 H 1.08001 * 119.99987 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99728 * 0.02562 * 1 2 3 31 31 H 1.08001 * 119.99728 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.47032 * 15.00109 * 3 2 1 33 33 H 1.09000 * 109.47229 * 254.99896 * 3 2 1 34 34 H 1.08996 * 109.47071 * 176.71244 * 7 5 4 35 35 H 1.09004 * 109.47285 * 296.71185 * 7 5 4 36 36 H 1.09001 * 109.47353 * 56.71222 * 7 5 4 37 37 H 1.08999 * 109.11360 * 258.79070 * 11 10 8 38 38 H 1.09002 * 109.10845 * 17.90999 * 11 10 8 39 39 H 1.08989 * 109.44462 * 79.97623 * 12 11 10 40 40 H 1.09002 * 109.44342 * 199.88278 * 12 11 10 41 41 H 1.09004 * 109.55851 * 332.63581 * 13 12 11 42 42 H 1.08994 * 109.63049 * 212.40874 * 13 12 11 43 43 H 1.09003 * 109.47220 * 317.08164 * 15 14 13 44 44 H 1.08994 * 109.47161 * 77.07876 * 15 14 13 45 45 H 0.96994 * 120.00015 * 359.97438 * 18 16 15 46 46 H 0.96994 * 119.99761 * 179.97438 * 22 21 19 47 47 H 1.09001 * 109.38684 * 303.32851 * 27 14 13 48 48 H 1.08997 * 109.38608 * 183.63921 * 27 14 13 49 49 H 1.09004 * 109.43638 * 29.79092 * 28 10 8 50 50 H 1.08999 * 109.43224 * 149.66103 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9085 2.4348 1.0321 6 1 3.9137 2.9310 0.0616 7 6 3.3042 3.3713 2.0804 8 6 5.3206 2.0852 1.4252 9 8 5.5783 0.9732 1.8352 10 7 6.2972 3.0083 1.3213 11 6 5.9806 4.3100 0.7015 12 6 6.6337 5.4687 1.4738 13 6 6.5318 5.2107 2.9598 14 7 7.7398 4.5195 3.4077 15 6 8.1205 4.9481 4.7603 16 6 9.5520 4.5595 5.0261 17 8 10.1921 3.9819 4.1729 18 7 10.1209 4.8528 6.2121 19 6 11.4234 4.4997 6.4538 20 1 11.9935 3.9861 5.6937 21 6 12.0100 4.8026 7.6764 22 7 13.2584 4.4637 7.9081 23 14 11.0242 5.6915 8.9906 24 1 10.3340 4.6961 9.8497 25 1 11.9380 6.5147 9.8229 26 1 10.0169 6.5705 8.3441 27 6 7.7297 3.1087 3.3071 28 6 7.6176 2.6852 1.8227 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3856 2.1160 0.2660 33 1 2.4756 1.4867 -0.9926 34 1 3.9329 4.2558 2.1828 35 1 2.3041 3.6707 1.7667 36 1 3.2451 2.8546 3.0383 37 1 6.3461 4.3147 -0.3253 38 1 4.8995 4.4491 0.6961 39 1 7.6828 5.5486 1.1894 40 1 6.1209 6.3999 1.2328 41 1 5.6597 4.5892 3.1634 42 1 6.4360 6.1580 3.4902 43 1 8.0168 6.0301 4.8413 44 1 7.4714 4.4652 5.4907 45 1 9.6090 5.3144 6.8946 46 1 13.6680 4.6755 8.7614 47 1 6.8790 2.7126 3.8616 48 1 8.6521 2.7093 3.7286 49 1 7.7849 1.6114 1.7382 50 1 8.3679 3.2157 1.2365 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198338002.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:35 Heat of formation + Delta-G solvation = -87.880713 kcal Electronic energy + Delta-G solvation = -30500.754806 eV Core-core repulsion = 26335.867321 eV Total energy + Delta-G solvation = -4164.887485 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.78556 -40.55855 -39.28482 -38.49382 -36.47016 -35.80041 -35.00640 -33.77006 -33.62306 -32.42173 -30.45986 -28.21666 -27.16499 -27.02171 -25.87199 -24.80403 -23.04205 -21.65149 -21.27669 -21.04360 -20.34221 -19.85433 -18.61765 -18.04098 -17.69327 -17.19770 -16.95631 -16.84003 -16.53099 -16.25659 -16.12737 -15.90625 -15.68282 -15.16116 -15.10262 -14.73190 -14.42368 -14.39693 -14.21778 -14.11913 -13.78750 -13.52227 -13.46699 -13.11978 -13.05052 -12.94692 -12.73414 -12.57614 -12.54627 -12.40954 -12.28383 -11.97915 -11.84620 -11.80335 -11.75611 -11.46048 -11.14485 -10.58689 -10.35699 -10.25549 -10.22002 -9.70557 -9.07938 -8.40388 -6.00769 1.18583 1.29464 1.35543 1.44103 1.47857 1.80470 1.97758 2.23321 2.63003 2.85614 3.15823 3.21183 3.40657 3.79106 3.85412 3.93901 3.97457 4.08604 4.12210 4.14364 4.21026 4.22487 4.31692 4.36243 4.39982 4.45541 4.51171 4.54559 4.58231 4.71297 4.75887 4.78148 4.84465 4.89697 4.98352 5.00889 5.13356 5.18021 5.35265 5.54594 5.59078 5.65630 5.70473 5.92935 6.07780 6.10680 6.32106 6.53272 6.61349 6.90068 7.10363 7.41625 7.99192 8.77347 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022382 B = 0.002192 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.695003 B =12770.493764 C =12928.516115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.180 4.180 3 C 0.082 3.918 4 O -0.391 6.391 5 C 0.075 3.925 6 H 0.121 0.879 7 C -0.169 4.169 8 C 0.499 3.501 9 O -0.579 6.579 10 N -0.598 5.598 11 C 0.093 3.907 12 C -0.128 4.128 13 C 0.066 3.934 14 N -0.552 5.552 15 C 0.062 3.938 16 C 0.449 3.551 17 O -0.603 6.603 18 N -0.593 5.593 19 C -0.325 4.325 20 H 0.055 0.945 21 C -0.017 4.017 22 N -0.936 5.936 23 Si 0.965 3.035 24 H -0.261 1.261 25 H -0.275 1.275 26 H -0.228 1.228 27 C 0.074 3.926 28 C 0.131 3.869 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.046 0.954 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.065 0.935 40 H 0.121 0.879 41 H 0.043 0.957 42 H 0.097 0.903 43 H 0.128 0.872 44 H 0.068 0.932 45 H 0.389 0.611 46 H 0.278 0.722 47 H 0.004 0.996 48 H 0.065 0.935 49 H 0.063 0.937 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.614 6.331 -15.866 35.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.198 4.198 3 C 0.007 3.993 4 O -0.310 6.310 5 C 0.014 3.986 6 H 0.138 0.862 7 C -0.226 4.226 8 C 0.287 3.713 9 O -0.457 6.457 10 N -0.332 5.332 11 C -0.027 4.027 12 C -0.166 4.166 13 C -0.060 4.060 14 N -0.277 5.277 15 C -0.069 4.069 16 C 0.237 3.763 17 O -0.487 6.487 18 N -0.236 5.236 19 C -0.454 4.454 20 H 0.073 0.927 21 C -0.216 4.216 22 N -0.577 5.577 23 Si 0.785 3.215 24 H -0.186 1.186 25 H -0.200 1.200 26 H -0.151 1.151 27 C -0.056 4.056 28 C 0.007 3.993 29 H 0.131 0.869 30 H 0.134 0.866 31 H 0.117 0.883 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.131 0.869 39 H 0.084 0.916 40 H 0.139 0.861 41 H 0.061 0.939 42 H 0.115 0.885 43 H 0.146 0.854 44 H 0.085 0.915 45 H 0.224 0.776 46 H 0.088 0.912 47 H 0.022 0.978 48 H 0.083 0.917 49 H 0.081 0.919 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -29.517 5.334 -16.318 34.147 hybrid contribution 0.238 -0.471 1.515 1.604 sum -29.279 4.863 -14.803 33.167 Atomic orbital electron populations 1.24058 0.94828 1.03597 0.97497 1.22774 0.96418 0.97997 1.02641 1.21867 0.88550 0.96739 0.92165 1.88072 1.45077 1.36487 1.61352 1.22056 0.87018 0.87242 1.02251 0.86189 1.22351 1.03439 0.98783 0.98055 1.21312 0.88109 0.84229 0.77609 1.90698 1.83781 1.23711 1.47549 1.47966 1.09238 1.16233 1.59723 1.22556 1.02622 0.80435 0.97133 1.21890 1.02588 0.98584 0.93542 1.21804 0.88434 0.98585 0.97218 1.57790 1.37593 1.08426 1.23932 1.21834 0.91085 1.03245 0.90701 1.21014 0.90558 0.82815 0.81962 1.90516 1.66032 1.45773 1.46384 1.42056 1.11825 1.54548 1.15125 1.18988 0.88240 1.36908 1.01291 0.92716 1.26118 0.97052 0.98358 1.00029 1.69810 1.14201 1.47921 1.25743 0.85368 0.79005 0.79119 0.78047 1.18585 1.19991 1.15150 1.21476 0.99502 0.87810 0.96811 1.21259 0.84194 1.00222 0.93600 0.86946 0.86556 0.88256 0.90099 0.90994 0.88718 0.88241 0.93455 0.89667 0.86866 0.91602 0.86086 0.93901 0.88466 0.85419 0.91458 0.77610 0.91236 0.97772 0.91677 0.91877 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 14.31 67.78 0.97 -0.70 16 2 C -0.18 -2.70 9.89 25.64 0.25 -2.45 16 3 C 0.08 1.12 6.16 71.23 0.44 1.56 16 4 O -0.39 -8.77 9.53 -130.24 -1.24 -10.01 16 5 C 0.08 1.28 2.27 29.85 0.07 1.35 16 6 H 0.12 1.10 6.75 -2.39 -0.02 1.09 16 7 C -0.17 -2.02 9.10 71.98 0.65 -1.37 16 8 C 0.50 13.27 6.94 87.65 0.61 13.88 16 9 O -0.58 -22.25 15.95 15.70 0.25 -21.99 16 10 N -0.60 -13.53 2.18 -817.88 -1.79 -15.32 16 11 C 0.09 1.12 5.41 86.43 0.47 1.59 16 12 C -0.13 -1.64 5.77 30.27 0.17 -1.47 16 13 C 0.07 1.17 5.32 85.84 0.46 1.62 16 14 N -0.55 -15.98 3.60 -916.40 -3.30 -19.28 16 15 C 0.06 1.88 5.44 85.55 0.47 2.35 16 16 C 0.45 20.27 7.37 87.66 0.65 20.92 16 17 O -0.60 -33.17 13.96 -3.07 -0.04 -33.22 16 18 N -0.59 -28.15 5.09 -306.99 -1.56 -29.71 16 19 C -0.32 -19.21 10.16 84.04 0.85 -18.35 16 20 H 0.05 3.86 7.39 -2.91 -0.02 3.83 16 21 C -0.02 -0.97 5.50 84.92 0.47 -0.50 16 22 N -0.94 -57.12 13.96 21.66 0.30 -56.82 16 23 Si 0.96 39.16 27.74 68.60 1.90 41.06 16 24 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 26 H -0.23 -7.69 6.52 99.48 0.65 -7.04 16 27 C 0.07 2.54 5.01 87.91 0.44 2.98 16 28 C 0.13 3.98 5.56 87.29 0.49 4.46 16 29 H 0.11 0.94 8.06 -2.91 -0.02 0.91 16 30 H 0.12 0.74 7.90 -2.91 -0.02 0.72 16 31 H 0.10 1.79 8.06 -2.91 -0.02 1.77 16 32 H 0.08 0.66 7.67 -2.39 -0.02 0.65 16 33 H 0.07 0.76 8.08 -2.39 -0.02 0.74 16 34 H 0.09 0.79 4.79 -2.39 -0.01 0.78 16 35 H 0.10 0.63 7.95 -2.39 -0.02 0.61 16 36 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 37 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.11 0.64 4.27 -2.39 -0.01 0.63 16 39 H 0.07 1.22 7.98 -2.39 -0.02 1.20 16 40 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.04 0.75 5.88 -2.38 -0.01 0.74 16 42 H 0.10 1.29 7.36 -2.39 -0.02 1.27 16 43 H 0.13 2.96 7.57 -2.39 -0.02 2.94 16 44 H 0.07 1.84 8.11 -2.39 -0.02 1.82 16 45 H 0.39 15.24 5.76 -92.71 -0.53 14.70 16 46 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 47 H 0.00 0.15 8.12 -2.39 -0.02 0.14 16 48 H 0.07 2.84 5.61 -2.39 -0.01 2.83 16 49 H 0.06 2.20 7.21 -2.38 -0.02 2.19 16 50 H 0.09 2.64 8.11 -2.39 -0.02 2.62 16 Total: -1.00 -89.44 392.32 2.33 -87.11 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: 0.36 Total: 32.30 kcal Atomic # 6 Polarization: 18.43 SS G_CDS: 7.45 Total: 25.88 kcal Atomic # 7 Polarization: -114.78 SS G_CDS: -6.35 Total: -121.13 kcal Atomic # 8 Polarization: -64.19 SS G_CDS: -1.03 Total: -65.22 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 1.90 Total: 41.06 kcal Total: -89.44 2.33 -87.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198338002.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.771 kcal (2) G-P(sol) polarization free energy of solvation -89.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds