Wall clock time and date at job start Tue Mar 31 2020 23:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47561 * 2 1 4 4 C 1.46821 * 124.33333 * 269.93777 * 3 2 1 5 5 C 1.54484 * 105.44562 * 196.99650 * 4 3 2 6 6 H 1.08996 * 110.96735 * 92.76759 * 5 4 3 7 7 C 1.50702 * 110.97026 * 216.48996 * 5 4 3 8 8 O 1.21282 * 119.99624 * 17.40816 * 7 5 4 9 9 N 1.34774 * 120.00000 * 197.12992 * 7 5 4 10 10 C 1.47510 * 118.75515 * 4.91918 * 9 7 5 11 11 C 1.53572 * 111.02559 * 221.60459 * 10 9 7 12 12 C 1.51535 * 109.58293 * 39.97623 * 11 10 9 13 13 O 1.42150 * 108.75710 * 268.59803 * 12 11 10 14 14 C 1.38022 * 119.43762 * 87.22992 * 13 12 11 15 15 H 1.08998 * 109.46492 * 56.56987 * 14 13 12 16 16 C 1.53002 * 109.46976 * 176.56743 * 14 13 12 17 17 N 1.46501 * 109.47182 * 299.99879 * 16 14 13 18 18 C 1.36934 * 119.99834 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99906 * 0.02562 * 18 17 16 20 20 C 1.38810 * 119.99926 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00326 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 120.00173 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47030 * 89.99782 * 22 20 18 24 24 H 1.48498 * 109.47040 * 210.00455 * 22 20 18 25 25 H 1.48501 * 109.46771 * 330.00131 * 22 20 18 26 26 C 1.45122 * 118.75583 * 184.64771 * 9 7 5 27 27 C 1.54625 * 101.79514 * 334.63007 * 5 4 3 28 28 C 1.34422 * 124.35073 * 89.97413 * 3 2 1 29 29 O 1.21272 * 124.94105 * 359.55336 * 28 3 2 30 30 H 1.09001 * 109.47458 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47311 * 300.00593 * 1 2 3 32 32 H 1.09001 * 109.47056 * 59.99959 * 1 2 3 33 33 H 1.08999 * 109.46688 * 239.99835 * 2 1 3 34 34 H 1.09001 * 109.47056 * 120.00041 * 2 1 3 35 35 H 1.09002 * 110.24196 * 78.01419 * 4 3 2 36 36 H 1.09001 * 110.28445 * 315.99809 * 4 3 2 37 37 H 1.08997 * 109.17129 * 341.99883 * 10 9 7 38 38 H 1.08998 * 109.16755 * 101.25889 * 10 9 7 39 39 H 1.08996 * 109.45425 * 160.01252 * 11 10 9 40 40 H 1.09003 * 109.45463 * 279.94314 * 11 10 9 41 41 H 1.08997 * 109.59439 * 28.38220 * 12 11 10 42 42 H 1.09007 * 109.58879 * 148.67725 * 12 11 10 43 43 H 1.08988 * 109.46994 * 60.00306 * 16 14 13 44 44 H 1.09003 * 109.46837 * 180.02562 * 16 14 13 45 45 H 0.97004 * 119.99873 * 0.02562 * 17 16 14 46 46 H 0.96992 * 120.00264 * 179.97438 * 21 20 18 47 47 H 1.08999 * 109.45761 * 210.75899 * 26 9 7 48 48 H 1.08993 * 109.45991 * 330.71728 * 26 9 7 49 49 H 1.08998 * 110.48609 * 143.45773 * 27 5 4 50 50 H 1.09007 * 110.48435 * 265.96348 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2957 2.1614 -1.2124 5 6 3.1750 3.3438 -0.7485 6 1 4.2338 3.1035 -0.8441 7 6 2.8385 4.5985 -1.5126 8 8 1.7916 4.6761 -2.1200 9 7 3.6983 5.6363 -1.5162 10 6 5.0075 5.4755 -0.8558 11 6 5.3805 6.7338 -0.0582 12 6 4.1497 7.2761 0.6398 13 8 3.5229 8.2264 -0.2114 14 6 2.6027 7.7968 -1.1461 15 1 1.8047 7.2488 -0.6450 16 6 2.0120 9.0064 -1.8735 17 7 1.3506 9.8838 -0.9045 18 6 0.7456 11.0374 -1.3269 19 1 0.7557 11.3001 -2.3744 20 6 0.1194 11.8690 -0.4087 21 7 -0.4626 12.9776 -0.8147 22 14 0.1025 11.4150 1.4032 23 1 1.2975 11.9924 2.0693 24 1 -1.1270 11.9547 2.0373 25 1 0.1237 9.9367 1.5432 26 6 3.3034 6.8677 -2.1748 27 6 2.7694 3.4754 0.7378 28 6 2.2708 2.0964 1.1098 29 8 2.1200 1.6949 2.2441 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8932 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.3654 2.5300 -1.6447 36 1 2.8346 1.5527 -1.9385 37 1 4.9645 4.6224 -0.1788 38 1 5.7702 5.2934 -1.6129 39 1 6.1375 6.4817 0.6843 40 1 5.7757 7.4898 -0.7367 41 1 3.4581 6.4598 0.8481 42 1 4.4411 7.7556 1.5744 43 1 2.8099 9.5543 -2.3744 44 1 1.2849 8.6671 -2.6113 45 1 1.3418 9.6480 0.0364 46 1 -0.9004 13.5585 -0.1732 47 1 4.1873 7.3664 -2.5725 48 1 2.6176 6.6395 -2.9905 49 1 3.6323 3.7460 1.3462 50 1 1.9760 4.2140 0.8527 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200634200.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:18 Heat of formation + Delta-G solvation = -82.595876 kcal Electronic energy + Delta-G solvation = -31169.978929 eV Core-core repulsion = 27005.320612 eV Total energy + Delta-G solvation = -4164.658317 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.48515 -40.23780 -38.69130 -36.67336 -35.92641 -34.80305 -34.35489 -32.94291 -31.17998 -30.45218 -29.11683 -28.16724 -26.97158 -25.63980 -24.13236 -23.19404 -22.04733 -21.79156 -21.08602 -19.85203 -19.13866 -18.26120 -17.65317 -17.19038 -16.66868 -16.49801 -16.35821 -15.95979 -15.64591 -15.09358 -14.68833 -14.36585 -14.32749 -14.18378 -14.04875 -13.87633 -13.76610 -13.49959 -13.42575 -12.89083 -12.68832 -12.63553 -12.52578 -12.35231 -12.22005 -12.02213 -11.96249 -11.76888 -11.48634 -11.45636 -11.23959 -10.97753 -10.81682 -10.45326 -10.34072 -10.09778 -9.94106 -9.59977 -9.53824 -9.13599 -8.85310 -8.76957 -7.16476 -5.71034 -3.05569 2.11841 2.23845 2.43720 2.69835 3.44108 3.48427 3.50725 3.69805 3.76856 3.87977 4.07339 4.35812 4.39837 4.46408 4.57684 4.64393 4.66148 4.75581 4.77371 4.94735 4.99206 5.00760 5.04181 5.13895 5.17438 5.26637 5.28779 5.29439 5.34583 5.41476 5.45374 5.48265 5.58819 5.66437 5.75759 5.80893 5.82400 5.91730 5.96899 6.11320 6.28335 6.54037 6.65345 6.67031 6.95321 7.76413 7.79054 7.81107 8.04816 8.48014 9.27744 10.00254 10.20872 11.47436 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013297 B = 0.002952 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.153919 B = 9482.092260 C =10110.679184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.123 3.877 3 N -0.619 5.619 4 C 0.115 3.885 5 C -0.127 4.127 6 H 0.114 0.886 7 C 0.519 3.481 8 O -0.523 6.523 9 N -0.605 5.605 10 C 0.102 3.898 11 C -0.167 4.167 12 C 0.071 3.929 13 O -0.370 6.370 14 C 0.085 3.915 15 H 0.050 0.950 16 C 0.171 3.829 17 N -0.750 5.750 18 C -0.241 4.241 19 H 0.090 0.910 20 C 0.004 3.996 21 N -0.936 5.936 22 Si 0.886 3.114 23 H -0.284 1.284 24 H -0.292 1.292 25 H -0.278 1.278 26 C 0.080 3.920 27 C -0.143 4.143 28 C 0.523 3.477 29 O -0.528 6.528 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.047 0.953 42 H 0.090 0.910 43 H 0.036 0.964 44 H 0.043 0.957 45 H 0.364 0.636 46 H 0.259 0.741 47 H 0.087 0.913 48 H 0.098 0.902 49 H 0.110 0.890 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.112 -27.525 -0.702 30.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.002 3.998 3 N -0.354 5.354 4 C -0.008 4.008 5 C -0.149 4.149 6 H 0.132 0.868 7 C 0.306 3.694 8 O -0.399 6.399 9 N -0.338 5.338 10 C -0.020 4.020 11 C -0.205 4.205 12 C -0.006 4.006 13 O -0.288 6.288 14 C 0.025 3.975 15 H 0.068 0.932 16 C 0.043 3.957 17 N -0.395 5.395 18 C -0.371 4.371 19 H 0.108 0.892 20 C -0.192 4.192 21 N -0.584 5.584 22 Si 0.717 3.283 23 H -0.210 1.210 24 H -0.219 1.219 25 H -0.205 1.205 26 C -0.043 4.043 27 C -0.183 4.183 28 C 0.310 3.690 29 O -0.404 6.404 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.065 0.935 42 H 0.108 0.892 43 H 0.053 0.947 44 H 0.061 0.939 45 H 0.197 0.803 46 H 0.069 0.931 47 H 0.105 0.895 48 H 0.116 0.884 49 H 0.129 0.871 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 13.419 -27.404 -0.585 30.518 hybrid contribution 0.029 -0.490 1.215 1.311 sum 13.447 -27.894 0.631 30.973 Atomic orbital electron populations 1.22176 0.95526 1.02468 1.02871 1.21367 0.94674 0.80629 1.03163 1.48354 1.65883 1.14025 1.07090 1.22051 1.00737 0.90933 0.87101 1.22286 1.02466 0.94425 0.95682 0.86752 1.20145 0.83945 0.84351 0.81007 1.90754 1.24174 1.81716 1.43208 1.47895 1.16737 1.13466 1.55687 1.22088 0.84155 0.99157 0.96643 1.22505 0.99713 0.97640 1.00685 1.22157 0.92682 0.92608 0.93156 1.86434 1.57686 1.36063 1.48629 1.22438 0.89752 0.96180 0.89163 0.93200 1.20595 0.94715 0.88501 0.91915 1.42547 1.66917 1.24811 1.05250 1.19053 1.26782 0.95914 0.95356 0.89191 1.24645 1.00280 0.96756 0.97492 1.69702 1.41578 1.13583 1.33528 0.86507 0.77149 0.77727 0.86916 1.21030 1.21855 1.20470 1.22558 1.01363 0.83694 0.96705 1.22334 1.04429 0.97123 0.94414 1.20668 0.76867 0.87020 0.84453 1.90743 1.53657 1.74980 1.20999 0.91295 0.92122 0.92107 0.90186 0.89911 0.88637 0.89722 0.89842 0.91044 0.89492 0.89661 0.93493 0.89170 0.94660 0.93922 0.80265 0.93116 0.89456 0.88383 0.87148 0.87114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 10.24 37.16 0.38 -0.85 16 2 C 0.12 0.85 6.65 -4.05 -0.03 0.82 16 3 N -0.62 -5.25 2.93 -172.37 -0.51 -5.76 16 4 C 0.12 0.83 6.83 -3.09 -0.02 0.81 16 5 C -0.13 -0.89 2.46 -90.14 -0.22 -1.11 16 6 H 0.11 0.48 6.70 -51.93 -0.35 0.14 16 7 C 0.52 5.36 6.79 -10.99 -0.07 5.29 16 8 O -0.52 -7.45 14.96 5.56 0.08 -7.37 16 9 N -0.61 -5.82 2.18 -172.14 -0.38 -6.19 16 10 C 0.10 0.64 5.88 -3.19 -0.02 0.62 16 11 C -0.17 -1.24 5.79 -27.18 -0.16 -1.40 16 12 C 0.07 0.78 6.37 36.42 0.23 1.01 16 13 O -0.37 -5.79 9.18 -26.56 -0.24 -6.04 16 14 C 0.08 1.34 2.74 -25.50 -0.07 1.27 16 15 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 16 C 0.17 3.37 5.95 -4.04 -0.02 3.35 16 17 N -0.75 -18.65 5.29 -59.91 -0.32 -18.97 16 18 C -0.24 -7.04 10.47 -15.06 -0.16 -7.20 16 19 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 20 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 21 N -0.94 -30.06 13.97 55.49 0.78 -29.28 16 22 Si 0.89 23.04 27.74 -169.99 -4.71 18.33 16 23 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 25 H -0.28 -6.92 6.52 56.52 0.37 -6.55 16 26 C 0.08 0.97 4.94 -3.55 -0.02 0.96 16 27 C -0.14 -1.17 6.15 -26.74 -0.16 -1.34 16 28 C 0.52 5.59 8.02 -10.86 -0.09 5.51 16 29 O -0.53 -7.66 17.60 5.56 0.10 -7.56 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.62 7.93 -51.93 -0.41 0.21 16 35 H 0.10 0.88 6.85 -51.93 -0.36 0.52 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.35 5.04 -51.93 -0.26 0.09 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.74 8.01 -51.93 -0.42 0.32 16 41 H 0.05 0.50 7.40 -51.93 -0.38 0.11 16 42 H 0.09 0.93 8.14 -51.92 -0.42 0.50 16 43 H 0.04 0.70 8.14 -51.94 -0.42 0.27 16 44 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.36 9.06 5.39 -40.82 -0.22 8.84 16 46 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 47 H 0.09 0.95 8.11 -51.93 -0.42 0.53 16 48 H 0.10 1.28 7.22 -51.93 -0.37 0.91 16 49 H 0.11 0.69 7.68 -51.93 -0.40 0.29 16 50 H 0.11 1.08 7.89 -51.93 -0.41 0.67 16 LS Contribution 393.53 15.07 5.93 5.93 Total: -1.00 -37.62 393.53 -8.04 -45.66 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -8.24 Total: 3.50 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -0.52 Total: 7.75 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: -0.42 Total: -60.20 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.06 Total: -20.97 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -4.71 Total: 18.33 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.62 -8.04 -45.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200634200.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.939 kcal (2) G-P(sol) polarization free energy of solvation -37.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds