Wall clock time and date at job start Tue Mar 31 2020 23:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47561 * 2 1 4 4 C 1.46821 * 124.33333 * 269.93777 * 3 2 1 5 5 C 1.54484 * 105.44562 * 196.99650 * 4 3 2 6 6 H 1.08996 * 110.96735 * 92.76759 * 5 4 3 7 7 C 1.50702 * 110.97026 * 216.48996 * 5 4 3 8 8 O 1.21282 * 119.99624 * 17.40816 * 7 5 4 9 9 N 1.34774 * 120.00000 * 197.12992 * 7 5 4 10 10 C 1.47510 * 118.75515 * 4.91918 * 9 7 5 11 11 C 1.53572 * 111.02559 * 221.60459 * 10 9 7 12 12 C 1.51535 * 109.58293 * 39.97623 * 11 10 9 13 13 O 1.42150 * 108.75710 * 268.59803 * 12 11 10 14 14 C 1.38022 * 119.43762 * 87.22992 * 13 12 11 15 15 H 1.08998 * 109.46492 * 56.56987 * 14 13 12 16 16 C 1.53002 * 109.46976 * 176.56743 * 14 13 12 17 17 N 1.46501 * 109.47182 * 299.99879 * 16 14 13 18 18 C 1.36934 * 119.99834 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99906 * 0.02562 * 18 17 16 20 20 C 1.38810 * 119.99926 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00326 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 120.00173 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47030 * 89.99782 * 22 20 18 24 24 H 1.48498 * 109.47040 * 210.00455 * 22 20 18 25 25 H 1.48501 * 109.46771 * 330.00131 * 22 20 18 26 26 C 1.45122 * 118.75583 * 184.64771 * 9 7 5 27 27 C 1.54625 * 101.79514 * 334.63007 * 5 4 3 28 28 C 1.34422 * 124.35073 * 89.97413 * 3 2 1 29 29 O 1.21272 * 124.94105 * 359.55336 * 28 3 2 30 30 H 1.09001 * 109.47458 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47311 * 300.00593 * 1 2 3 32 32 H 1.09001 * 109.47056 * 59.99959 * 1 2 3 33 33 H 1.08999 * 109.46688 * 239.99835 * 2 1 3 34 34 H 1.09001 * 109.47056 * 120.00041 * 2 1 3 35 35 H 1.09002 * 110.24196 * 78.01419 * 4 3 2 36 36 H 1.09001 * 110.28445 * 315.99809 * 4 3 2 37 37 H 1.08997 * 109.17129 * 341.99883 * 10 9 7 38 38 H 1.08998 * 109.16755 * 101.25889 * 10 9 7 39 39 H 1.08996 * 109.45425 * 160.01252 * 11 10 9 40 40 H 1.09003 * 109.45463 * 279.94314 * 11 10 9 41 41 H 1.08997 * 109.59439 * 28.38220 * 12 11 10 42 42 H 1.09007 * 109.58879 * 148.67725 * 12 11 10 43 43 H 1.08988 * 109.46994 * 60.00306 * 16 14 13 44 44 H 1.09003 * 109.46837 * 180.02562 * 16 14 13 45 45 H 0.97004 * 119.99873 * 0.02562 * 17 16 14 46 46 H 0.96992 * 120.00264 * 179.97438 * 21 20 18 47 47 H 1.08999 * 109.45761 * 210.75899 * 26 9 7 48 48 H 1.08993 * 109.45991 * 330.71728 * 26 9 7 49 49 H 1.08998 * 110.48609 * 143.45773 * 27 5 4 50 50 H 1.09007 * 110.48435 * 265.96348 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2957 2.1614 -1.2124 5 6 3.1750 3.3438 -0.7485 6 1 4.2338 3.1035 -0.8441 7 6 2.8385 4.5985 -1.5126 8 8 1.7916 4.6761 -2.1200 9 7 3.6983 5.6363 -1.5162 10 6 5.0075 5.4755 -0.8558 11 6 5.3805 6.7338 -0.0582 12 6 4.1497 7.2761 0.6398 13 8 3.5229 8.2264 -0.2114 14 6 2.6027 7.7968 -1.1461 15 1 1.8047 7.2488 -0.6450 16 6 2.0120 9.0064 -1.8735 17 7 1.3506 9.8838 -0.9045 18 6 0.7456 11.0374 -1.3269 19 1 0.7557 11.3001 -2.3744 20 6 0.1194 11.8690 -0.4087 21 7 -0.4626 12.9776 -0.8147 22 14 0.1025 11.4150 1.4032 23 1 1.2975 11.9924 2.0693 24 1 -1.1270 11.9547 2.0373 25 1 0.1237 9.9367 1.5432 26 6 3.3034 6.8677 -2.1748 27 6 2.7694 3.4754 0.7378 28 6 2.2708 2.0964 1.1098 29 8 2.1200 1.6949 2.2441 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8932 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.3654 2.5300 -1.6447 36 1 2.8346 1.5527 -1.9385 37 1 4.9645 4.6224 -0.1788 38 1 5.7702 5.2934 -1.6129 39 1 6.1375 6.4817 0.6843 40 1 5.7757 7.4898 -0.7367 41 1 3.4581 6.4598 0.8481 42 1 4.4411 7.7556 1.5744 43 1 2.8099 9.5543 -2.3744 44 1 1.2849 8.6671 -2.6113 45 1 1.3418 9.6480 0.0364 46 1 -0.9004 13.5585 -0.1732 47 1 4.1873 7.3664 -2.5725 48 1 2.6176 6.6395 -2.9905 49 1 3.6323 3.7460 1.3462 50 1 1.9760 4.2140 0.8527 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200634200.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:17 Heat of formation + Delta-G solvation = -109.951546 kcal Electronic energy + Delta-G solvation = -31171.165160 eV Core-core repulsion = 27005.320612 eV Total energy + Delta-G solvation = -4165.844548 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.24342 -41.09435 -39.69264 -37.49475 -37.04521 -36.32163 -35.00977 -34.28300 -32.98805 -31.20443 -30.26427 -28.90108 -27.93004 -26.76793 -25.14376 -24.16956 -23.39415 -22.66517 -22.31332 -20.56516 -19.88440 -19.81111 -18.94074 -17.99831 -17.66592 -17.44617 -17.14343 -16.88917 -16.46453 -16.38642 -16.01916 -15.70779 -15.14162 -15.07503 -14.89547 -14.85143 -14.72037 -14.49432 -14.44895 -14.23562 -13.97121 -13.75497 -13.46278 -13.31569 -13.19765 -12.96722 -12.85917 -12.66426 -12.57240 -12.47438 -12.29942 -12.08134 -12.03916 -11.97118 -11.83817 -11.46418 -11.20896 -11.03240 -10.79740 -10.56122 -9.82661 -9.66695 -9.32223 -8.04746 -5.37402 1.33982 1.35025 1.38190 1.44540 1.45435 1.74116 2.02916 2.46308 2.69932 3.02671 3.26949 3.28300 3.43798 3.53496 3.77587 3.84950 3.90130 3.99989 4.05510 4.07487 4.10512 4.20411 4.26211 4.31126 4.41878 4.44748 4.48912 4.50097 4.55082 4.64155 4.72076 4.76182 4.78265 4.85859 4.87234 4.88812 4.91070 5.08449 5.15326 5.21419 5.22927 5.48702 5.51362 5.72256 5.98237 6.18766 6.22650 6.72570 7.00271 7.03440 7.05513 7.81568 8.01125 9.16804 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013297 B = 0.002952 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.153919 B = 9482.092260 C =10110.679184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.117 3.883 3 N -0.614 5.614 4 C 0.114 3.886 5 C -0.112 4.112 6 H 0.159 0.841 7 C 0.517 3.483 8 O -0.570 6.570 9 N -0.602 5.602 10 C 0.096 3.904 11 C -0.159 4.159 12 C 0.059 3.941 13 O -0.398 6.398 14 C 0.101 3.899 15 H 0.028 0.972 16 C 0.164 3.836 17 N -0.754 5.754 18 C -0.234 4.234 19 H 0.060 0.940 20 C -0.062 4.062 21 N -0.982 5.982 22 Si 0.956 3.044 23 H -0.275 1.275 24 H -0.293 1.293 25 H -0.262 1.262 26 C 0.093 3.907 27 C -0.138 4.138 28 C 0.514 3.486 29 O -0.575 6.575 30 H 0.088 0.912 31 H 0.031 0.969 32 H 0.057 0.943 33 H 0.113 0.887 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.118 0.882 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.120 0.880 40 H 0.074 0.926 41 H 0.049 0.951 42 H 0.096 0.904 43 H 0.038 0.962 44 H 0.039 0.961 45 H 0.366 0.634 46 H 0.259 0.741 47 H 0.104 0.896 48 H 0.084 0.916 49 H 0.137 0.863 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.209 -30.345 -0.134 34.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.004 4.004 3 N -0.347 5.347 4 C -0.009 4.009 5 C -0.133 4.133 6 H 0.176 0.824 7 C 0.305 3.695 8 O -0.449 6.449 9 N -0.334 5.334 10 C -0.024 4.024 11 C -0.197 4.197 12 C -0.017 4.017 13 O -0.317 6.317 14 C 0.040 3.960 15 H 0.046 0.954 16 C 0.037 3.963 17 N -0.399 5.399 18 C -0.365 4.365 19 H 0.078 0.922 20 C -0.254 4.254 21 N -0.633 5.633 22 Si 0.784 3.216 23 H -0.201 1.201 24 H -0.219 1.219 25 H -0.188 1.188 26 C -0.032 4.032 27 C -0.178 4.178 28 C 0.302 3.698 29 O -0.455 6.455 30 H 0.107 0.893 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.131 0.869 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.117 0.883 39 H 0.138 0.862 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.114 0.886 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.198 0.802 46 H 0.068 0.932 47 H 0.122 0.878 48 H 0.103 0.897 49 H 0.155 0.845 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 16.575 -30.279 -0.047 34.518 hybrid contribution -0.935 0.381 0.949 1.385 sum 15.640 -29.898 0.902 33.754 Atomic orbital electron populations 1.22151 0.96034 1.03287 1.01264 1.21561 0.94258 0.80100 1.04445 1.48509 1.64680 1.14515 1.06989 1.22143 1.00304 0.91458 0.86989 1.22303 1.04760 0.92384 0.93844 0.82398 1.20692 0.83120 0.85251 0.80413 1.90746 1.26179 1.82652 1.45281 1.47977 1.17977 1.12121 1.55311 1.22434 0.82752 0.99543 0.97665 1.22439 0.98462 0.97691 1.01095 1.22485 0.93934 0.92127 0.93117 1.86356 1.57687 1.38435 1.49261 1.22035 0.89798 0.94272 0.89869 0.95402 1.20762 0.94461 0.89488 0.91579 1.42576 1.66971 1.24216 1.06179 1.19069 1.26149 0.97120 0.94133 0.92167 1.25460 1.00591 0.96885 1.02456 1.69870 1.43186 1.15067 1.35176 0.85389 0.77154 0.78267 0.80816 1.20120 1.21928 1.18755 1.22214 1.01378 0.84359 0.95211 1.22314 1.04775 0.95077 0.95667 1.21087 0.76543 0.87957 0.84200 1.90714 1.55889 1.76070 1.22823 0.89348 0.94955 0.92353 0.86878 0.90576 0.90961 0.86360 0.86961 0.88344 0.86193 0.90707 0.93275 0.88618 0.94422 0.94277 0.80152 0.93247 0.87792 0.89734 0.84538 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.24 71.98 0.74 -1.56 16 2 C 0.12 1.40 6.65 86.38 0.57 1.98 16 3 N -0.61 -9.27 2.93 -817.86 -2.40 -11.67 16 4 C 0.11 1.34 6.83 86.82 0.59 1.93 16 5 C -0.11 -1.17 2.46 -10.48 -0.03 -1.20 16 6 H 0.16 0.34 6.70 -2.39 -0.02 0.32 16 7 C 0.52 9.53 6.79 87.66 0.59 10.12 16 8 O -0.57 -16.02 14.96 -3.04 -0.05 -16.06 16 9 N -0.60 -9.84 2.18 -816.93 -1.78 -11.62 16 10 C 0.10 0.72 5.88 86.38 0.51 1.23 16 11 C -0.16 -1.69 5.79 30.31 0.18 -1.51 16 12 C 0.06 1.14 6.37 71.50 0.46 1.60 16 13 O -0.40 -11.98 9.18 -117.95 -1.08 -13.06 16 14 C 0.10 3.15 2.74 31.39 0.09 3.24 16 15 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 16 C 0.16 6.58 5.95 86.38 0.51 7.09 16 17 N -0.75 -37.96 5.29 -343.46 -1.82 -39.78 16 18 C -0.23 -14.02 10.47 84.03 0.88 -13.14 16 19 H 0.06 3.89 8.06 -2.91 -0.02 3.87 16 20 C -0.06 -3.84 5.50 84.86 0.47 -3.37 16 21 N -0.98 -64.83 13.97 21.65 0.30 -64.53 16 22 Si 0.96 48.15 27.74 68.60 1.90 50.05 16 23 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 24 H -0.29 -14.69 7.11 99.48 0.71 -13.99 16 25 H -0.26 -12.35 6.52 99.48 0.65 -11.70 16 26 C 0.09 2.13 4.94 87.43 0.43 2.56 16 27 C -0.14 -1.94 6.15 30.59 0.19 -1.76 16 28 C 0.51 10.37 8.02 87.90 0.71 11.07 16 29 O -0.57 -16.63 17.60 -3.00 -0.05 -16.68 16 30 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.08 1.04 7.93 -2.39 -0.02 1.02 16 35 H 0.07 1.26 6.85 -2.39 -0.02 1.24 16 36 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.11 0.23 5.04 -2.39 -0.01 0.22 16 38 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.07 1.01 8.01 -2.39 -0.02 1.00 16 41 H 0.05 0.92 7.40 -2.39 -0.02 0.90 16 42 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 43 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.37 18.06 5.39 -92.71 -0.50 17.56 16 46 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 47 H 0.10 2.04 8.11 -2.39 -0.02 2.02 16 48 H 0.08 2.19 7.22 -2.39 -0.02 2.17 16 49 H 0.14 1.17 7.68 -2.39 -0.02 1.16 16 50 H 0.09 1.70 7.89 -2.38 -0.02 1.68 16 Total: -1.00 -87.13 393.53 2.29 -84.84 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.38 Total: 20.23 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 6.89 Total: 18.29 kcal Atomic # 7 Polarization: -121.90 SS G_CDS: -5.70 Total: -127.60 kcal Atomic # 8 Polarization: -44.63 SS G_CDS: -1.18 Total: -45.81 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 1.90 Total: 50.05 kcal Total: -87.13 2.29 -84.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200634200.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.112 kcal (2) G-P(sol) polarization free energy of solvation -87.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds