Wall clock time and date at job start Tue Mar 31 2020 22:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47193 * 2 1 4 4 N 1.46501 * 109.47114 * 240.00510 * 2 1 3 5 5 C 1.34775 * 120.00606 * 84.99645 * 4 2 1 6 6 O 1.21280 * 119.99487 * 359.97438 * 5 4 2 7 7 C 1.50696 * 120.00203 * 180.02562 * 5 4 2 8 8 C 1.54894 * 110.48422 * 63.24037 * 7 5 4 9 9 C 1.55238 * 102.58338 * 156.67616 * 8 7 5 10 10 C 1.54266 * 104.23333 * 322.08174 * 9 8 7 11 11 C 1.53869 * 106.59800 * 23.61579 * 10 9 8 12 12 C 1.50697 * 109.47580 * 119.99722 * 2 1 3 13 13 O 1.21283 * 119.99967 * 119.99978 * 12 2 1 14 14 N 1.34780 * 120.00244 * 300.00620 * 12 2 1 15 15 C 1.46496 * 119.99799 * 179.97438 * 14 12 2 16 16 H 1.08995 * 110.64784 * 36.68619 * 15 14 12 17 17 C 1.54325 * 110.72129 * 273.53917 * 15 14 12 18 18 N 1.47020 * 107.27143 * 219.44869 * 17 15 14 19 19 C 1.36941 * 125.64344 * 178.90775 * 18 17 15 20 20 H 1.07997 * 120.00328 * 359.97438 * 19 18 17 21 21 C 1.38814 * 119.99571 * 179.97438 * 19 18 17 22 22 N 1.31619 * 120.00235 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99578 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47461 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47061 * 119.99954 * 23 21 19 26 26 H 1.48499 * 109.47321 * 239.99828 * 23 21 19 27 27 C 1.47421 * 108.70592 * 358.94055 * 18 17 15 28 28 C 1.54909 * 104.83005 * 24.12617 * 27 18 17 29 29 H 1.09007 * 111.00387 * 204.91461 * 28 27 18 30 30 O 1.42904 * 111.00030 * 81.06594 * 28 27 18 31 31 H 1.08998 * 109.47139 * 299.99413 * 1 2 3 32 32 H 1.08989 * 109.47537 * 59.99932 * 1 2 3 33 33 H 1.09002 * 109.46675 * 180.02562 * 1 2 3 34 34 H 0.97005 * 119.99133 * 264.99770 * 4 2 1 35 35 H 1.09002 * 110.43350 * 300.69816 * 7 5 4 36 36 H 1.08996 * 110.75388 * 275.05970 * 8 7 5 37 37 H 1.08993 * 110.76071 * 38.44196 * 8 7 5 38 38 H 1.09005 * 110.46917 * 203.39204 * 9 8 7 39 39 H 1.09006 * 110.46947 * 80.77225 * 9 8 7 40 40 H 1.08999 * 110.03060 * 264.32313 * 10 9 8 41 41 H 1.09003 * 110.02805 * 142.89578 * 10 9 8 42 42 H 1.09001 * 110.02983 * 240.71432 * 11 10 9 43 43 H 1.08995 * 110.03881 * 119.28625 * 11 10 9 44 44 H 0.96998 * 119.99438 * 359.97438 * 14 12 2 45 45 H 1.09004 * 109.88072 * 338.86719 * 17 15 14 46 46 H 1.08995 * 109.88044 * 100.02799 * 17 15 14 47 47 H 0.97002 * 119.99625 * 180.02562 * 22 21 19 48 48 H 1.08996 * 110.36423 * 142.96983 * 27 18 17 49 49 H 1.09007 * 110.36419 * 265.29000 * 27 18 17 50 50 H 0.96701 * 113.99806 * 67.80518 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8581 1.1584 -2.4117 7 6 2.6488 -0.7287 -3.5878 8 6 1.6658 -1.8509 -4.0045 9 6 1.9779 -2.0304 -5.5145 10 6 2.2399 -0.5969 -6.0207 11 6 2.6665 0.2307 -4.7957 12 6 2.0324 -0.7103 1.2304 13 8 2.7297 -1.6964 1.1191 14 7 1.7068 -0.2499 2.4546 15 6 2.1948 -0.9408 3.6507 16 1 3.2059 -1.3157 3.4923 17 6 1.2422 -2.0892 4.0448 18 7 1.1475 -2.0937 5.5119 19 6 0.3826 -2.9488 6.2596 20 1 -0.2198 -3.7010 5.7721 21 6 0.3816 -2.8487 7.6441 22 7 1.1161 -1.9323 8.2383 23 14 -0.6623 -4.0147 8.6640 24 1 -1.3890 -4.9452 7.7632 25 1 0.2130 -4.7929 9.5769 26 1 -1.6405 -3.2334 9.4628 27 6 2.0116 -1.0247 6.0448 28 6 2.1399 -0.0042 4.8864 29 1 3.0577 0.5768 4.9774 30 8 0.9974 0.8523 4.8295 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 2.2490 -1.6317 -1.1526 35 1 3.6433 -1.1386 -3.4116 36 1 1.8712 -2.7685 -3.4533 37 1 0.6333 -1.5340 -3.8583 38 1 1.1232 -2.4672 -6.0311 39 1 2.8641 -2.6506 -5.6495 40 1 1.3298 -0.1816 -6.4535 41 1 3.0378 -0.6032 -6.7633 42 1 1.9634 1.0477 -4.6339 43 1 3.6713 0.6262 -4.9437 44 1 1.1494 0.5389 2.5435 45 1 0.2571 -1.9193 3.6102 46 1 1.6443 -3.0404 3.6963 47 1 1.1156 -1.8626 9.2058 48 1 1.5457 -0.5574 6.9123 49 1 2.9908 -1.4246 6.3083 50 1 0.9206 1.4560 5.5810 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219683120.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:16 Heat of formation + Delta-G solvation = -105.925740 kcal Electronic energy + Delta-G solvation = -30152.049902 eV Core-core repulsion = 25986.379926 eV Total energy + Delta-G solvation = -4165.669976 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.66193 -39.65835 -38.05758 -37.33880 -35.08846 -34.76059 -34.14649 -31.97158 -31.09623 -29.18969 -28.93998 -28.46018 -27.06206 -24.96680 -24.18912 -22.28028 -20.92389 -20.68209 -20.34455 -20.00455 -19.69737 -18.12726 -17.34110 -17.06276 -16.54697 -16.19672 -15.85122 -15.44801 -15.16218 -14.92675 -14.79206 -14.61797 -14.13067 -13.74716 -13.71577 -13.54807 -13.20718 -13.00796 -12.84913 -12.58152 -12.47566 -12.15212 -11.86937 -11.73996 -11.61389 -11.49168 -11.44584 -11.38856 -11.13036 -11.11326 -10.90603 -10.74781 -10.66960 -10.39074 -10.08040 -9.97551 -9.88515 -9.80717 -9.34176 -9.23586 -8.81703 -8.72348 -6.88879 -5.73117 -3.12969 2.41906 2.61372 2.76321 3.36388 3.39404 3.43060 3.45289 4.13093 4.22038 4.38789 4.42989 4.50362 4.72436 4.84213 4.93303 4.98708 5.03044 5.11063 5.15473 5.22415 5.27634 5.31057 5.32203 5.44488 5.46759 5.49461 5.59685 5.61250 5.67456 5.74417 5.81994 5.86955 5.94999 5.96593 5.99996 6.03070 6.20972 6.22221 6.44770 6.64620 6.86752 7.21265 7.32367 7.52309 7.63381 7.70753 8.02845 8.06350 8.27466 8.28598 9.14534 9.75506 10.38393 11.32161 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024079 B = 0.002117 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.544425 B =13225.642602 C =13819.342155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.125 3.875 3 H 0.112 0.888 4 N -0.710 5.710 5 C 0.524 3.476 6 O -0.542 6.542 7 C -0.114 4.114 8 C -0.115 4.115 9 C -0.123 4.123 10 C -0.125 4.125 11 C -0.112 4.112 12 C 0.507 3.493 13 O -0.542 6.542 14 N -0.700 5.700 15 C 0.142 3.858 16 H 0.100 0.900 17 C 0.133 3.867 18 N -0.597 5.597 19 C -0.216 4.216 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.927 5.927 23 Si 0.917 3.083 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.127 3.873 28 C 0.067 3.933 29 H 0.059 0.941 30 O -0.561 6.561 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.411 0.589 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.410 0.590 45 H 0.030 0.970 46 H 0.028 0.972 47 H 0.252 0.748 48 H 0.116 0.884 49 H 0.023 0.977 50 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.618 5.595 -22.823 23.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.017 3.983 3 H 0.130 0.870 4 N -0.363 5.363 5 C 0.310 3.690 6 O -0.419 6.419 7 C -0.135 4.135 8 C -0.153 4.153 9 C -0.161 4.161 10 C -0.163 4.163 11 C -0.150 4.150 12 C 0.292 3.708 13 O -0.420 6.420 14 N -0.351 5.351 15 C 0.037 3.963 16 H 0.118 0.882 17 C 0.006 3.994 18 N -0.323 5.323 19 C -0.344 4.344 20 H 0.096 0.904 21 C -0.208 4.208 22 N -0.576 5.576 23 Si 0.747 3.253 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.217 1.217 27 C 0.001 3.999 28 C 0.007 3.993 29 H 0.077 0.923 30 O -0.367 6.367 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.247 0.753 35 H 0.120 0.880 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.246 0.754 45 H 0.048 0.952 46 H 0.046 0.954 47 H 0.063 0.937 48 H 0.133 0.867 49 H 0.041 0.959 50 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 2.758 5.349 -23.262 24.028 hybrid contribution -0.435 -0.464 1.309 1.455 sum 2.323 4.885 -21.953 22.610 Atomic orbital electron populations 1.22125 0.92665 1.03342 1.03628 1.20753 0.95826 0.98000 0.83760 0.86983 1.45793 1.67216 1.14916 1.08426 1.20572 0.77020 0.87095 0.84271 1.90679 1.50289 1.16057 1.84923 1.22176 1.01039 0.97311 0.92975 1.22571 0.98956 0.97296 0.96500 1.22414 1.01642 0.96981 0.95070 1.22153 1.01361 0.95157 0.97610 1.22071 1.02718 0.98105 0.92062 1.20541 0.80498 0.84810 0.84964 1.90693 1.38402 1.26311 1.86594 1.45778 1.52786 1.31893 1.04639 1.22186 0.98803 0.93153 0.82134 0.88204 1.21579 0.96184 0.94918 0.86767 1.44295 1.51769 1.37262 0.98964 1.19140 1.18207 1.08810 0.88244 0.90351 1.24768 1.00260 0.99470 0.96310 1.69727 1.43652 1.35789 1.08426 0.85956 0.79390 0.79810 0.80102 1.20514 1.21752 1.21734 1.22606 0.94490 0.87938 0.94853 1.23577 0.87426 0.91601 0.96710 0.92295 1.86229 1.47454 1.53745 1.49295 0.90603 0.90965 0.91623 0.75254 0.87968 0.90595 0.90853 0.91340 0.91295 0.91676 0.91712 0.89777 0.91475 0.75392 0.95249 0.95417 0.93749 0.86659 0.95945 0.77194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.38 37.16 0.35 -1.32 16 2 C 0.13 1.47 2.98 -69.08 -0.21 1.26 16 3 H 0.11 1.32 7.58 -51.93 -0.39 0.93 16 4 N -0.71 -7.81 4.92 -54.94 -0.27 -8.08 16 5 C 0.52 5.86 7.10 -10.99 -0.08 5.78 16 6 O -0.54 -7.70 15.10 5.56 0.08 -7.62 16 7 C -0.11 -0.94 3.24 -90.11 -0.29 -1.23 16 8 C -0.12 -0.80 6.32 -24.55 -0.16 -0.95 16 9 C -0.12 -0.74 6.84 -24.88 -0.17 -0.91 16 10 C -0.13 -0.80 6.80 -25.62 -0.17 -0.98 16 11 C -0.11 -0.91 6.17 -25.62 -0.16 -1.07 16 12 C 0.51 7.32 7.22 -10.99 -0.08 7.24 16 13 O -0.54 -9.39 15.56 5.56 0.09 -9.31 16 14 N -0.70 -10.29 4.98 -52.04 -0.26 -10.55 16 15 C 0.14 2.54 3.12 -66.10 -0.21 2.33 16 16 H 0.10 1.82 7.69 -51.93 -0.40 1.42 16 17 C 0.13 2.86 6.99 -3.06 -0.02 2.84 16 18 N -0.60 -15.08 3.39 -170.08 -0.58 -15.66 16 19 C -0.22 -5.98 10.27 -15.06 -0.15 -6.14 16 20 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 21 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 22 N -0.93 -26.17 10.09 55.49 0.56 -25.61 16 23 Si 0.92 21.90 29.55 -169.99 -5.02 16.88 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 C 0.13 2.90 5.62 -2.53 -0.01 2.89 16 28 C 0.07 1.18 4.28 -24.58 -0.11 1.08 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 O -0.56 -9.13 12.23 -35.23 -0.43 -9.57 16 31 H 0.08 0.74 7.56 -51.93 -0.39 0.35 16 32 H 0.07 0.76 8.14 -51.94 -0.42 0.33 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.41 4.30 7.79 -40.82 -0.32 3.98 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.56 8.05 -51.93 -0.42 0.14 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 0.84 6.88 -51.93 -0.36 0.48 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.41 5.44 6.99 -40.82 -0.29 5.16 16 45 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 46 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 48 H 0.12 2.92 5.88 -51.93 -0.31 2.62 16 49 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.38 4.97 9.12 45.56 0.42 5.39 16 LS Contribution 398.38 15.07 6.00 6.00 Total: -1.00 -32.86 398.38 -8.88 -41.74 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -7.49 Total: 11.40 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: -1.56 Total: 10.36 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: -0.55 Total: -59.90 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.26 Total: -26.49 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.86 -8.88 -41.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219683120.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.182 kcal (2) G-P(sol) polarization free energy of solvation -32.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds