Wall clock time and date at job start Tue Mar 31 2020 22:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47193 * 2 1 4 4 N 1.46501 * 109.47114 * 240.00510 * 2 1 3 5 5 C 1.34775 * 120.00606 * 84.99645 * 4 2 1 6 6 O 1.21280 * 119.99487 * 359.97438 * 5 4 2 7 7 C 1.50696 * 120.00203 * 180.02562 * 5 4 2 8 8 C 1.54894 * 110.48422 * 63.24037 * 7 5 4 9 9 C 1.55238 * 102.58338 * 156.67616 * 8 7 5 10 10 C 1.54266 * 104.23333 * 322.08174 * 9 8 7 11 11 C 1.53869 * 106.59800 * 23.61579 * 10 9 8 12 12 C 1.50697 * 109.47580 * 119.99722 * 2 1 3 13 13 O 1.21283 * 119.99967 * 119.99978 * 12 2 1 14 14 N 1.34780 * 120.00244 * 300.00620 * 12 2 1 15 15 C 1.46496 * 119.99799 * 179.97438 * 14 12 2 16 16 H 1.08995 * 110.64784 * 36.68619 * 15 14 12 17 17 C 1.54325 * 110.72129 * 273.53917 * 15 14 12 18 18 N 1.47020 * 107.27143 * 219.44869 * 17 15 14 19 19 C 1.36941 * 125.64344 * 178.90775 * 18 17 15 20 20 H 1.07997 * 120.00328 * 359.97438 * 19 18 17 21 21 C 1.38814 * 119.99571 * 179.97438 * 19 18 17 22 22 N 1.31619 * 120.00235 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99578 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47461 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47061 * 119.99954 * 23 21 19 26 26 H 1.48499 * 109.47321 * 239.99828 * 23 21 19 27 27 C 1.47421 * 108.70592 * 358.94055 * 18 17 15 28 28 C 1.54909 * 104.83005 * 24.12617 * 27 18 17 29 29 H 1.09007 * 111.00387 * 204.91461 * 28 27 18 30 30 O 1.42904 * 111.00030 * 81.06594 * 28 27 18 31 31 H 1.08998 * 109.47139 * 299.99413 * 1 2 3 32 32 H 1.08989 * 109.47537 * 59.99932 * 1 2 3 33 33 H 1.09002 * 109.46675 * 180.02562 * 1 2 3 34 34 H 0.97005 * 119.99133 * 264.99770 * 4 2 1 35 35 H 1.09002 * 110.43350 * 300.69816 * 7 5 4 36 36 H 1.08996 * 110.75388 * 275.05970 * 8 7 5 37 37 H 1.08993 * 110.76071 * 38.44196 * 8 7 5 38 38 H 1.09005 * 110.46917 * 203.39204 * 9 8 7 39 39 H 1.09006 * 110.46947 * 80.77225 * 9 8 7 40 40 H 1.08999 * 110.03060 * 264.32313 * 10 9 8 41 41 H 1.09003 * 110.02805 * 142.89578 * 10 9 8 42 42 H 1.09001 * 110.02983 * 240.71432 * 11 10 9 43 43 H 1.08995 * 110.03881 * 119.28625 * 11 10 9 44 44 H 0.96998 * 119.99438 * 359.97438 * 14 12 2 45 45 H 1.09004 * 109.88072 * 338.86719 * 17 15 14 46 46 H 1.08995 * 109.88044 * 100.02799 * 17 15 14 47 47 H 0.97002 * 119.99625 * 180.02562 * 22 21 19 48 48 H 1.08996 * 110.36423 * 142.96983 * 27 18 17 49 49 H 1.09007 * 110.36419 * 265.29000 * 27 18 17 50 50 H 0.96701 * 113.99806 * 67.80518 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8581 1.1584 -2.4117 7 6 2.6488 -0.7287 -3.5878 8 6 1.6658 -1.8509 -4.0045 9 6 1.9779 -2.0304 -5.5145 10 6 2.2399 -0.5969 -6.0207 11 6 2.6665 0.2307 -4.7957 12 6 2.0324 -0.7103 1.2304 13 8 2.7297 -1.6964 1.1191 14 7 1.7068 -0.2499 2.4546 15 6 2.1948 -0.9408 3.6507 16 1 3.2059 -1.3157 3.4923 17 6 1.2422 -2.0892 4.0448 18 7 1.1475 -2.0937 5.5119 19 6 0.3826 -2.9488 6.2596 20 1 -0.2198 -3.7010 5.7721 21 6 0.3816 -2.8487 7.6441 22 7 1.1161 -1.9323 8.2383 23 14 -0.6623 -4.0147 8.6640 24 1 -1.3890 -4.9452 7.7632 25 1 0.2130 -4.7929 9.5769 26 1 -1.6405 -3.2334 9.4628 27 6 2.0116 -1.0247 6.0448 28 6 2.1399 -0.0042 4.8864 29 1 3.0577 0.5768 4.9774 30 8 0.9974 0.8523 4.8295 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 2.2490 -1.6317 -1.1526 35 1 3.6433 -1.1386 -3.4116 36 1 1.8712 -2.7685 -3.4533 37 1 0.6333 -1.5340 -3.8583 38 1 1.1232 -2.4672 -6.0311 39 1 2.8641 -2.6506 -5.6495 40 1 1.3298 -0.1816 -6.4535 41 1 3.0378 -0.6032 -6.7633 42 1 1.9634 1.0477 -4.6339 43 1 3.6713 0.6262 -4.9437 44 1 1.1494 0.5389 2.5435 45 1 0.2571 -1.9193 3.6102 46 1 1.6443 -3.0404 3.6963 47 1 1.1156 -1.8626 9.2058 48 1 1.5457 -0.5574 6.9123 49 1 2.9908 -1.4246 6.3083 50 1 0.9206 1.4560 5.5810 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219683120.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:15 Heat of formation + Delta-G solvation = -130.936651 kcal Electronic energy + Delta-G solvation = -30153.134456 eV Core-core repulsion = 25986.379926 eV Total energy + Delta-G solvation = -4166.754530 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.68282 -40.77962 -39.47919 -38.07584 -36.37332 -36.07818 -35.56711 -33.69454 -32.18907 -30.32718 -29.73529 -29.49397 -28.69711 -26.57900 -25.46024 -23.19179 -22.39210 -21.77384 -21.32908 -21.14354 -20.71910 -19.31126 -18.83441 -18.35512 -17.74241 -17.30015 -16.89149 -16.60744 -16.48135 -16.29954 -15.88686 -15.74828 -15.61522 -14.97173 -14.68676 -14.62774 -14.32488 -14.30520 -14.25276 -13.84287 -13.54241 -13.36661 -13.22417 -12.92860 -12.85829 -12.77665 -12.70093 -12.25352 -12.19546 -12.10455 -12.05384 -11.97190 -11.90621 -11.85415 -11.69155 -11.28499 -11.06505 -10.89269 -10.81802 -10.72533 -10.26146 -10.15928 -8.90478 -7.81474 -5.24427 1.41751 1.46418 1.46877 1.53978 1.57253 1.75471 2.32548 2.48758 3.16718 3.29895 3.45137 3.52838 3.63155 3.71959 3.81705 3.84846 3.93585 3.99563 4.05886 4.24447 4.30120 4.48037 4.48554 4.53539 4.58649 4.62331 4.63400 4.71759 4.74847 4.80427 4.86089 4.93689 4.96826 5.11337 5.12981 5.20983 5.26611 5.29991 5.33016 5.41049 5.42748 5.47134 5.49643 5.71560 6.25414 6.44060 6.46369 6.88958 7.08298 7.09996 7.15258 7.72997 8.35202 9.20740 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024079 B = 0.002117 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.544425 B =13225.642602 C =13819.342155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.133 3.867 3 H 0.116 0.884 4 N -0.708 5.708 5 C 0.523 3.477 6 O -0.575 6.575 7 C -0.111 4.111 8 C -0.114 4.114 9 C -0.120 4.120 10 C -0.123 4.123 11 C -0.113 4.113 12 C 0.511 3.489 13 O -0.570 6.570 14 N -0.690 5.690 15 C 0.155 3.845 16 H 0.098 0.902 17 C 0.133 3.867 18 N -0.616 5.616 19 C -0.238 4.238 20 H 0.074 0.926 21 C -0.062 4.062 22 N -0.945 5.945 23 Si 0.980 3.020 24 H -0.272 1.272 25 H -0.292 1.292 26 H -0.288 1.288 27 C 0.126 3.874 28 C 0.090 3.910 29 H 0.094 0.906 30 O -0.562 6.562 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.414 0.586 35 H 0.117 0.883 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.419 0.581 45 H 0.025 0.975 46 H 0.012 0.988 47 H 0.249 0.751 48 H 0.091 0.909 49 H 0.001 0.999 50 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.537 5.769 -24.152 24.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.024 3.976 3 H 0.134 0.866 4 N -0.361 5.361 5 C 0.311 3.689 6 O -0.454 6.454 7 C -0.132 4.132 8 C -0.151 4.151 9 C -0.157 4.157 10 C -0.160 4.160 11 C -0.151 4.151 12 C 0.297 3.703 13 O -0.449 6.449 14 N -0.342 5.342 15 C 0.049 3.951 16 H 0.116 0.884 17 C 0.006 3.994 18 N -0.343 5.343 19 C -0.367 4.367 20 H 0.092 0.908 21 C -0.255 4.255 22 N -0.595 5.595 23 Si 0.808 3.192 24 H -0.196 1.196 25 H -0.219 1.219 26 H -0.215 1.215 27 C 0.000 4.000 28 C 0.029 3.971 29 H 0.112 0.888 30 O -0.371 6.371 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.252 0.748 35 H 0.135 0.865 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.258 0.742 45 H 0.043 0.957 46 H 0.030 0.970 47 H 0.059 0.941 48 H 0.108 0.892 49 H 0.019 0.981 50 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 2.667 5.545 -24.612 25.370 hybrid contribution -0.411 -0.521 1.719 1.843 sum 2.256 5.023 -22.893 23.546 Atomic orbital electron populations 1.22086 0.91515 1.03347 1.04181 1.20697 0.96534 0.97684 0.82683 0.86591 1.45826 1.66992 1.15041 1.08215 1.21083 0.76212 0.86740 0.84830 1.90665 1.51803 1.17542 1.85426 1.22248 1.01979 0.97524 0.91498 1.22584 0.98024 0.97049 0.97492 1.22420 1.02458 0.96756 0.94112 1.22147 1.01719 0.95152 0.97020 1.22066 1.02349 0.97750 0.92891 1.20959 0.79644 0.84293 0.85382 1.90686 1.39627 1.27651 1.86983 1.45615 1.52880 1.31876 1.03858 1.21849 0.97665 0.92103 0.83530 0.88366 1.21632 0.96772 0.95959 0.85002 1.44559 1.51668 1.37584 1.00464 1.19414 1.18745 1.09491 0.89032 0.90803 1.25550 1.01563 1.01123 0.97238 1.69949 1.44483 1.36757 1.08303 0.84991 0.77795 0.78009 0.78390 1.19632 1.21855 1.21477 1.22505 0.92588 0.88545 0.96334 1.23275 0.89256 0.90787 0.93764 0.88800 1.86197 1.47043 1.53652 1.50178 0.89670 0.90792 0.91863 0.74833 0.86492 0.89582 0.91758 0.90579 0.90235 0.91779 0.90535 0.92028 0.91115 0.74237 0.95748 0.96955 0.94107 0.89166 0.98141 0.75321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.38 71.98 0.68 -2.31 16 2 C 0.13 2.93 2.98 44.24 0.13 3.06 16 3 H 0.12 2.55 7.58 -2.39 -0.02 2.53 16 4 N -0.71 -14.77 4.92 -446.11 -2.19 -16.96 16 5 C 0.52 11.24 7.10 87.66 0.62 11.87 16 6 O -0.57 -16.09 15.10 -3.03 -0.05 -16.14 16 7 C -0.11 -1.69 3.24 -10.46 -0.03 -1.73 16 8 C -0.11 -1.39 6.32 32.01 0.20 -1.19 16 9 C -0.12 -1.17 6.84 31.79 0.22 -0.95 16 10 C -0.12 -1.37 6.80 31.32 0.21 -1.16 16 11 C -0.11 -1.73 6.17 31.32 0.19 -1.54 16 12 C 0.51 14.07 7.22 87.66 0.63 14.71 16 13 O -0.57 -19.23 15.56 -3.04 -0.05 -19.28 16 14 N -0.69 -19.16 4.98 -436.93 -2.18 -21.33 16 15 C 0.15 5.35 3.12 46.18 0.14 5.49 16 16 H 0.10 3.49 7.69 -2.39 -0.02 3.47 16 17 C 0.13 5.78 6.99 86.73 0.61 6.38 16 18 N -0.62 -31.60 3.39 -692.00 -2.35 -33.95 16 19 C -0.24 -13.39 10.27 84.03 0.86 -12.53 16 20 H 0.07 4.09 7.83 -2.91 -0.02 4.06 16 21 C -0.06 -3.46 5.49 84.86 0.47 -3.00 16 22 N -0.95 -54.13 10.09 21.65 0.22 -53.91 16 23 Si 0.98 45.25 29.55 68.60 2.03 47.28 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 26 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 27 C 0.13 5.80 5.62 86.86 0.49 6.29 16 28 C 0.09 3.01 4.28 31.99 0.14 3.15 16 29 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 30 O -0.56 -17.11 12.23 -148.98 -1.82 -18.93 16 31 H 0.08 1.50 7.56 -2.39 -0.02 1.48 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.41 8.19 7.79 -92.70 -0.72 7.47 16 35 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.06 0.91 8.05 -2.39 -0.02 0.89 16 38 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 39 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 40 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.06 1.24 6.88 -2.39 -0.02 1.22 16 43 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.42 10.18 6.99 -92.71 -0.65 9.53 16 45 H 0.02 1.08 8.03 -2.39 -0.02 1.06 16 46 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 48 H 0.09 4.64 5.88 -2.39 -0.01 4.63 16 49 H 0.00 0.03 8.14 -2.38 -0.02 0.02 16 50 H 0.40 9.48 9.12 -74.06 -0.68 8.80 16 Total: -1.00 -71.36 398.38 -1.90 -73.26 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: -1.07 Total: 33.40 kcal Atomic # 6 Polarization: 21.01 SS G_CDS: 5.56 Total: 26.57 kcal Atomic # 7 Polarization: -119.66 SS G_CDS: -6.50 Total: -126.15 kcal Atomic # 8 Polarization: -52.43 SS G_CDS: -1.91 Total: -54.35 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -71.36 -1.90 -73.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219683120.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.678 kcal (2) G-P(sol) polarization free energy of solvation -71.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds