Wall clock time and date at job start Tue Mar 31 2020 22:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00393 * 2 1 4 4 C 1.52998 * 109.47459 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.47299 * 305.00680 * 4 3 2 6 6 C 1.52999 * 109.46672 * 64.99975 * 4 3 2 7 7 C 1.50695 * 109.47214 * 185.00193 * 4 3 2 8 8 O 1.21279 * 120.00352 * 0.02562 * 7 4 3 9 9 N 1.34786 * 119.99888 * 180.02562 * 7 4 3 10 10 C 1.47220 * 136.44544 * 359.62310 * 9 7 4 11 11 C 1.54272 * 87.56604 * 151.81100 * 10 9 7 12 12 H 1.08994 * 113.90888 * 140.39848 * 11 10 9 13 13 C 1.51761 * 112.53307 * 271.72600 * 11 10 9 14 14 C 1.51685 * 113.41744 * 124.66439 * 13 11 10 15 15 N 1.46391 * 111.36515 * 312.64543 * 14 13 11 16 16 C 1.46900 * 110.99827 * 188.94357 * 15 14 13 17 17 C 1.50705 * 109.47443 * 66.41323 * 16 15 14 18 18 O 1.21291 * 119.99529 * 6.27947 * 17 16 15 19 19 N 1.34773 * 119.99813 * 186.28105 * 17 16 15 20 20 C 1.37105 * 119.99587 * 179.97438 * 19 17 16 21 21 H 1.08004 * 119.99940 * 0.02562 * 20 19 17 22 22 C 1.38944 * 119.99887 * 179.97438 * 20 19 17 23 23 N 1.31418 * 120.00231 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99917 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47093 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46713 * 120.00327 * 24 22 20 27 27 H 1.48502 * 109.46987 * 240.00281 * 24 22 20 28 28 C 1.45172 * 109.88351 * 65.36130 * 15 14 13 29 29 C 1.46603 * 136.44784 * 179.97438 * 9 7 4 30 30 H 1.08994 * 112.82547 * 94.33486 * 29 9 7 31 31 H 1.09001 * 109.46618 * 300.00366 * 1 2 3 32 32 H 1.08996 * 109.47138 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46682 * 59.99908 * 1 2 3 34 34 H 1.08998 * 109.47193 * 300.00353 * 3 2 1 35 35 H 1.09001 * 109.47085 * 60.00022 * 3 2 1 36 36 H 1.09005 * 109.46993 * 179.97438 * 6 4 3 37 37 H 1.08993 * 109.47561 * 300.00223 * 6 4 3 38 38 H 1.09000 * 109.47352 * 60.00536 * 6 4 3 39 39 H 1.09000 * 113.52240 * 266.44666 * 10 9 7 40 40 H 1.09002 * 113.52348 * 37.05854 * 10 9 7 41 41 H 1.09003 * 108.69215 * 245.68052 * 13 11 10 42 42 H 1.09000 * 108.69225 * 3.77361 * 13 11 10 43 43 H 1.08995 * 109.10101 * 73.13339 * 14 13 11 44 44 H 1.09000 * 109.09776 * 192.16108 * 14 13 11 45 45 H 1.09005 * 109.47283 * 186.41704 * 16 15 14 46 46 H 1.09001 * 109.47225 * 306.41561 * 16 15 14 47 47 H 0.96996 * 120.00626 * 359.97438 * 19 17 16 48 48 H 0.96996 * 120.00058 * 180.02562 * 23 22 20 49 49 H 1.09008 * 108.02928 * 175.20130 * 28 15 14 50 50 H 1.09000 * 109.99026 * 55.71686 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1846 0.0006 5 1 3.8509 0.5683 0.8427 6 6 3.9962 0.5363 -1.3064 7 6 4.1480 2.5558 0.1245 8 8 3.4350 3.5336 0.2049 9 7 5.4885 2.6958 0.1460 10 6 6.6558 1.8009 0.0827 11 6 7.4371 2.9725 -0.5474 12 1 8.4652 3.0577 -0.1956 13 6 7.3033 3.0149 -2.0585 14 6 6.7901 4.3432 -2.5812 15 7 5.6208 4.7974 -1.8266 16 6 5.0036 5.9672 -2.4659 17 6 4.4265 5.5652 -3.7988 18 8 4.4182 4.3981 -4.1288 19 7 3.9197 6.5027 -4.6239 20 6 3.3951 6.1370 -5.8367 21 1 3.3877 5.0978 -6.1306 22 6 2.8721 7.1033 -6.6871 23 7 2.8807 8.3678 -6.3293 24 14 2.1567 6.6051 -8.3393 25 1 2.2656 5.1331 -8.5021 26 1 0.7280 7.0052 -8.4009 27 1 2.9075 7.2809 -9.4278 28 6 5.9992 5.0836 -0.4546 29 6 6.4392 3.8070 0.2491 30 1 6.7643 3.9917 1.2729 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 -0.8900 34 1 1.6887 1.8463 -0.8899 35 1 1.6888 1.8463 0.8900 36 1 5.0829 0.4506 -1.3062 37 1 3.5532 -0.4555 -1.3960 38 1 3.6810 1.1525 -2.1485 39 1 7.0309 1.5052 1.0625 40 1 6.5193 0.9549 -0.5909 41 1 8.2799 2.8190 -2.5013 42 1 6.6151 2.2293 -2.3704 43 1 7.5805 5.0889 -2.4972 44 1 6.5163 4.2318 -3.6304 45 1 4.2090 6.3532 -1.8274 46 1 5.7578 6.7400 -2.6147 47 1 3.9260 7.4360 -4.3597 48 1 2.5153 9.0423 -6.9228 49 1 5.1300 5.4993 0.0554 50 1 6.8132 5.8083 -0.4361 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221439616.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:39 Heat of formation + Delta-G solvation = -63.532831 kcal Electronic energy + Delta-G solvation = -31518.376126 eV Core-core repulsion = 27354.544444 eV Total energy + Delta-G solvation = -4163.831681 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.24751 -38.92008 -38.21622 -37.44495 -35.99591 -33.79746 -33.57585 -32.02548 -31.13026 -29.58514 -28.45652 -27.33468 -25.88794 -25.66076 -24.17214 -23.85371 -22.42267 -21.71533 -19.75229 -19.12096 -17.94874 -17.81985 -17.30810 -16.36227 -16.21541 -15.99052 -15.67682 -15.39074 -15.00417 -14.94147 -14.71439 -14.45983 -14.11992 -13.96346 -13.71473 -13.47523 -13.28895 -12.93031 -12.78151 -12.49831 -12.32276 -12.28844 -12.08025 -11.91454 -11.68856 -11.46574 -11.39470 -11.28499 -11.19681 -11.05814 -10.96264 -10.73854 -10.36670 -10.30746 -10.18090 -10.10434 -9.69020 -9.41909 -9.36778 -8.56098 -8.29845 -7.89774 -7.73913 -6.35970 -3.76356 2.77017 2.91678 3.19590 3.29497 3.36797 3.75051 3.97589 4.00634 4.17490 4.33025 4.48668 4.70648 4.84762 4.92841 4.98793 5.06901 5.20282 5.21452 5.23762 5.25771 5.29388 5.30100 5.31572 5.42698 5.50938 5.56107 5.57553 5.65879 5.67308 5.76523 5.83791 5.87080 5.90637 5.91832 5.93980 6.06797 6.12376 6.17025 6.34755 6.37904 6.44077 6.52224 7.08336 7.41975 7.56615 7.60710 7.92355 8.13229 8.41050 8.69059 9.24596 9.62017 10.14367 10.82173 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009599 B = 0.003663 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.393546 B = 7642.018591 C = 9553.304375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.394 6.394 3 C 0.080 3.920 4 C -0.098 4.098 5 H 0.095 0.905 6 C -0.141 4.141 7 C 0.562 3.438 8 O -0.528 6.528 9 N -0.624 5.624 10 C 0.094 3.906 11 C -0.118 4.118 12 H 0.093 0.907 13 C -0.089 4.089 14 C 0.055 3.945 15 N -0.496 5.496 16 C 0.051 3.949 17 C 0.448 3.552 18 O -0.575 6.575 19 N -0.568 5.568 20 C -0.295 4.295 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.050 3.950 29 C 0.145 3.855 30 H 0.091 0.909 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.043 0.957 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.019 0.981 44 H 0.096 0.904 45 H 0.089 0.911 46 H 0.044 0.956 47 H 0.391 0.609 48 H 0.270 0.730 49 H 0.082 0.918 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.898 -12.308 15.966 21.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.313 6.313 3 C 0.003 3.997 4 C -0.119 4.119 5 H 0.113 0.887 6 C -0.199 4.199 7 C 0.352 3.648 8 O -0.403 6.403 9 N -0.360 5.360 10 C -0.029 4.029 11 C -0.137 4.137 12 H 0.111 0.889 13 C -0.127 4.127 14 C -0.073 4.073 15 N -0.219 5.219 16 C -0.081 4.081 17 C 0.233 3.767 18 O -0.458 6.458 19 N -0.205 5.205 20 C -0.425 4.425 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.755 3.245 25 H -0.193 1.193 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.079 4.079 29 C 0.041 3.959 30 H 0.109 0.891 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.037 0.963 44 H 0.114 0.886 45 H 0.107 0.893 46 H 0.062 0.938 47 H 0.224 0.776 48 H 0.080 0.920 49 H 0.100 0.900 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.910 -12.982 15.668 21.488 hybrid contribution -0.024 1.375 -0.545 1.479 sum 6.886 -11.607 15.123 20.269 Atomic orbital electron populations 1.22713 0.80848 1.02443 1.00278 1.87766 1.19802 1.28159 1.95578 1.22240 0.91594 0.83978 1.01875 1.21038 0.94952 0.94526 1.01427 0.88661 1.21785 1.01152 1.01267 0.95651 1.19629 0.79509 0.90396 0.75302 1.90699 1.59328 1.40779 1.49538 1.49169 1.02980 1.10390 1.73472 1.23481 0.83899 0.95122 1.00411 1.22608 0.98043 0.96398 0.96660 0.88895 1.20727 1.00861 0.99154 0.91910 1.21770 0.90165 0.94860 1.00477 1.60907 1.27707 1.32990 1.00315 1.21821 0.98828 0.91115 0.96294 1.19724 0.84385 0.86637 0.85909 1.90491 1.61022 1.18162 1.76136 1.41880 1.53369 1.08814 1.16420 1.19726 1.34809 0.95402 0.92529 0.87972 1.25238 0.97937 0.94836 1.00010 1.69626 1.46705 1.00187 1.37996 0.85826 0.78412 0.78876 0.81379 1.19277 1.20808 1.20827 1.21739 1.00073 0.95181 0.90936 1.22177 0.86455 0.89217 0.98077 0.89145 0.94173 0.89751 0.93791 0.91941 0.92623 0.92120 0.91271 0.91248 0.90053 0.89855 0.91560 0.90970 0.96312 0.88572 0.89320 0.93848 0.77583 0.92030 0.89986 0.94317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.39 -5.15 10.24 -35.23 -0.36 -5.51 16 3 C 0.08 1.12 4.67 37.16 0.17 1.30 16 4 C -0.10 -1.29 2.85 -91.78 -0.26 -1.55 16 5 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 6 C -0.14 -1.81 8.97 37.16 0.33 -1.48 16 7 C 0.56 8.73 7.33 -10.98 -0.08 8.64 16 8 O -0.53 -10.25 15.83 5.56 0.09 -10.16 16 9 N -0.62 -7.95 3.25 -184.98 -0.60 -8.55 16 10 C 0.09 0.82 7.46 -10.76 -0.08 0.74 16 11 C -0.12 -1.11 4.56 -90.83 -0.41 -1.53 16 12 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 13 C -0.09 -1.09 5.74 -28.03 -0.16 -1.25 16 14 C 0.06 0.88 5.03 -4.77 -0.02 0.85 16 15 N -0.50 -8.62 4.21 -239.25 -1.01 -9.63 16 16 C 0.05 0.98 5.44 -4.97 -0.03 0.95 16 17 C 0.45 10.96 7.26 -10.98 -0.08 10.88 16 18 O -0.57 -15.75 14.32 5.55 0.08 -15.67 16 19 N -0.57 -14.86 5.29 -10.96 -0.06 -14.92 16 20 C -0.29 -8.40 9.68 -14.93 -0.14 -8.55 16 21 H 0.10 3.05 7.16 -52.48 -0.38 2.68 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -25.16 13.05 55.50 0.72 -24.44 16 24 Si 0.93 21.49 29.55 -169.99 -5.02 16.47 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 C 0.05 0.70 4.74 -5.13 -0.02 0.68 16 29 C 0.14 1.65 4.29 -76.26 -0.33 1.32 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.78 7.95 -51.93 -0.41 0.36 16 36 H 0.06 0.68 5.24 -51.93 -0.27 0.40 16 37 H 0.07 0.82 7.82 -51.93 -0.41 0.42 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.70 5.41 -51.93 -0.28 0.42 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 1.01 7.48 -51.93 -0.39 0.62 16 43 H 0.02 0.27 8.02 -51.93 -0.42 -0.14 16 44 H 0.10 1.90 5.99 -51.93 -0.31 1.59 16 45 H 0.09 1.69 7.93 -51.93 -0.41 1.28 16 46 H 0.04 0.76 8.12 -51.93 -0.42 0.34 16 47 H 0.39 9.88 7.90 -40.82 -0.32 9.56 16 48 H 0.27 7.09 8.31 -40.82 -0.34 6.76 16 49 H 0.08 1.29 7.51 -51.92 -0.39 0.90 16 50 H 0.04 0.48 8.04 -51.93 -0.42 0.06 16 LS Contribution 395.88 15.07 5.97 5.97 Total: -1.00 -34.54 395.88 -8.48 -43.02 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -8.19 Total: 10.47 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: -0.10 Total: 12.96 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.94 Total: -57.53 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.19 Total: -31.34 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.54 -8.48 -43.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221439616.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.513 kcal (2) G-P(sol) polarization free energy of solvation -34.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds