Wall clock time and date at job start Tue Mar 31 2020 22:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00393 * 2 1 4 4 C 1.52998 * 109.47459 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.47299 * 305.00680 * 4 3 2 6 6 C 1.52999 * 109.46672 * 64.99975 * 4 3 2 7 7 C 1.50695 * 109.47214 * 185.00193 * 4 3 2 8 8 O 1.21279 * 120.00352 * 0.02562 * 7 4 3 9 9 N 1.34786 * 119.99888 * 180.02562 * 7 4 3 10 10 C 1.47220 * 136.44544 * 359.62310 * 9 7 4 11 11 C 1.54272 * 87.56604 * 151.81100 * 10 9 7 12 12 H 1.08994 * 113.90888 * 140.39848 * 11 10 9 13 13 C 1.51761 * 112.53307 * 271.72600 * 11 10 9 14 14 C 1.51685 * 113.41744 * 124.66439 * 13 11 10 15 15 N 1.46391 * 111.36515 * 312.64543 * 14 13 11 16 16 C 1.46900 * 110.99827 * 188.94357 * 15 14 13 17 17 C 1.50705 * 109.47443 * 66.41323 * 16 15 14 18 18 O 1.21291 * 119.99529 * 6.27947 * 17 16 15 19 19 N 1.34773 * 119.99813 * 186.28105 * 17 16 15 20 20 C 1.37105 * 119.99587 * 179.97438 * 19 17 16 21 21 H 1.08004 * 119.99940 * 0.02562 * 20 19 17 22 22 C 1.38944 * 119.99887 * 179.97438 * 20 19 17 23 23 N 1.31418 * 120.00231 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99917 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47093 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46713 * 120.00327 * 24 22 20 27 27 H 1.48502 * 109.46987 * 240.00281 * 24 22 20 28 28 C 1.45172 * 109.88351 * 65.36130 * 15 14 13 29 29 C 1.46603 * 136.44784 * 179.97438 * 9 7 4 30 30 H 1.08994 * 112.82547 * 94.33486 * 29 9 7 31 31 H 1.09001 * 109.46618 * 300.00366 * 1 2 3 32 32 H 1.08996 * 109.47138 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46682 * 59.99908 * 1 2 3 34 34 H 1.08998 * 109.47193 * 300.00353 * 3 2 1 35 35 H 1.09001 * 109.47085 * 60.00022 * 3 2 1 36 36 H 1.09005 * 109.46993 * 179.97438 * 6 4 3 37 37 H 1.08993 * 109.47561 * 300.00223 * 6 4 3 38 38 H 1.09000 * 109.47352 * 60.00536 * 6 4 3 39 39 H 1.09000 * 113.52240 * 266.44666 * 10 9 7 40 40 H 1.09002 * 113.52348 * 37.05854 * 10 9 7 41 41 H 1.09003 * 108.69215 * 245.68052 * 13 11 10 42 42 H 1.09000 * 108.69225 * 3.77361 * 13 11 10 43 43 H 1.08995 * 109.10101 * 73.13339 * 14 13 11 44 44 H 1.09000 * 109.09776 * 192.16108 * 14 13 11 45 45 H 1.09005 * 109.47283 * 186.41704 * 16 15 14 46 46 H 1.09001 * 109.47225 * 306.41561 * 16 15 14 47 47 H 0.96996 * 120.00626 * 359.97438 * 19 17 16 48 48 H 0.96996 * 120.00058 * 180.02562 * 23 22 20 49 49 H 1.09008 * 108.02928 * 175.20130 * 28 15 14 50 50 H 1.09000 * 109.99026 * 55.71686 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1846 0.0006 5 1 3.8509 0.5683 0.8427 6 6 3.9962 0.5363 -1.3064 7 6 4.1480 2.5558 0.1245 8 8 3.4350 3.5336 0.2049 9 7 5.4885 2.6958 0.1460 10 6 6.6558 1.8009 0.0827 11 6 7.4371 2.9725 -0.5474 12 1 8.4652 3.0577 -0.1956 13 6 7.3033 3.0149 -2.0585 14 6 6.7901 4.3432 -2.5812 15 7 5.6208 4.7974 -1.8266 16 6 5.0036 5.9672 -2.4659 17 6 4.4265 5.5652 -3.7988 18 8 4.4182 4.3981 -4.1288 19 7 3.9197 6.5027 -4.6239 20 6 3.3951 6.1370 -5.8367 21 1 3.3877 5.0978 -6.1306 22 6 2.8721 7.1033 -6.6871 23 7 2.8807 8.3678 -6.3293 24 14 2.1567 6.6051 -8.3393 25 1 2.2656 5.1331 -8.5021 26 1 0.7280 7.0052 -8.4009 27 1 2.9075 7.2809 -9.4278 28 6 5.9992 5.0836 -0.4546 29 6 6.4392 3.8070 0.2491 30 1 6.7643 3.9917 1.2729 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 -0.8900 34 1 1.6887 1.8463 -0.8899 35 1 1.6888 1.8463 0.8900 36 1 5.0829 0.4506 -1.3062 37 1 3.5532 -0.4555 -1.3960 38 1 3.6810 1.1525 -2.1485 39 1 7.0309 1.5052 1.0625 40 1 6.5193 0.9549 -0.5909 41 1 8.2799 2.8190 -2.5013 42 1 6.6151 2.2293 -2.3704 43 1 7.5805 5.0889 -2.4972 44 1 6.5163 4.2318 -3.6304 45 1 4.2090 6.3532 -1.8274 46 1 5.7578 6.7400 -2.6147 47 1 3.9260 7.4360 -4.3597 48 1 2.5153 9.0423 -6.9228 49 1 5.1300 5.4993 0.0554 50 1 6.8132 5.8083 -0.4361 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221439616.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:38 Heat of formation + Delta-G solvation = -90.359947 kcal Electronic energy + Delta-G solvation = -31519.539437 eV Core-core repulsion = 27354.544444 eV Total energy + Delta-G solvation = -4164.994992 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.22133 -40.36740 -39.73306 -38.56420 -37.38392 -35.86998 -34.69578 -33.37706 -32.97788 -30.72768 -29.72468 -28.31497 -27.41168 -26.71776 -25.73675 -25.04344 -23.46663 -22.80065 -21.11807 -20.71663 -19.91361 -18.98919 -18.35310 -17.77800 -17.32524 -17.19890 -16.92845 -16.56733 -16.42004 -16.33138 -16.15708 -15.81503 -15.66670 -15.31900 -15.00790 -14.84590 -14.51525 -14.27242 -13.93083 -13.70208 -13.57826 -13.50525 -13.30841 -13.16574 -13.06488 -12.98502 -12.75942 -12.58736 -12.43480 -12.33447 -12.23254 -12.14329 -12.05162 -11.81662 -11.58421 -11.36786 -11.07927 -10.73372 -10.49370 -10.29280 -10.01869 -9.48965 -9.09657 -8.48562 -5.97512 1.33753 1.38015 1.52898 1.76325 1.86526 2.03300 2.26157 2.76419 2.80307 3.17662 3.28257 3.40671 3.51783 3.77687 3.87074 3.91464 4.05653 4.14006 4.22771 4.24358 4.34613 4.37203 4.40720 4.44428 4.47585 4.52903 4.53407 4.59163 4.60532 4.62168 4.68249 4.71617 4.78609 4.84300 4.88130 4.94458 4.98335 5.09868 5.16575 5.30466 5.32391 5.37993 5.49082 5.90458 6.07183 6.12680 6.36253 6.58708 6.93599 7.10805 7.30909 7.53754 8.10042 8.69540 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009599 B = 0.003663 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.393546 B = 7642.018591 C = 9553.304375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.086 3.914 4 C -0.093 4.093 5 H 0.126 0.874 6 C -0.130 4.130 7 C 0.550 3.450 8 O -0.583 6.583 9 N -0.632 5.632 10 C 0.099 3.901 11 C -0.105 4.105 12 H 0.140 0.860 13 C -0.086 4.086 14 C 0.056 3.944 15 N -0.517 5.517 16 C 0.063 3.937 17 C 0.445 3.555 18 O -0.609 6.609 19 N -0.577 5.577 20 C -0.330 4.330 21 H 0.077 0.923 22 C -0.014 4.014 23 N -0.923 5.923 24 Si 0.994 3.006 25 H -0.274 1.274 26 H -0.271 1.271 27 H -0.267 1.267 28 C 0.049 3.951 29 C 0.136 3.864 30 H 0.129 0.871 31 H 0.050 0.950 32 H 0.110 0.890 33 H 0.036 0.964 34 H 0.027 0.973 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.024 0.976 39 H 0.124 0.876 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.046 0.954 43 H 0.036 0.964 44 H 0.047 0.953 45 H 0.087 0.913 46 H 0.066 0.934 47 H 0.394 0.606 48 H 0.277 0.723 49 H 0.057 0.943 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.240 -13.530 17.632 24.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C 0.009 3.991 4 C -0.114 4.114 5 H 0.144 0.856 6 C -0.187 4.187 7 C 0.340 3.660 8 O -0.463 6.463 9 N -0.367 5.367 10 C -0.023 4.023 11 C -0.124 4.124 12 H 0.158 0.842 13 C -0.124 4.124 14 C -0.071 4.071 15 N -0.241 5.241 16 C -0.068 4.068 17 C 0.232 3.768 18 O -0.494 6.494 19 N -0.215 5.215 20 C -0.460 4.460 21 H 0.095 0.905 22 C -0.213 4.213 23 N -0.564 5.564 24 Si 0.817 3.183 25 H -0.199 1.199 26 H -0.197 1.197 27 H -0.192 1.192 28 C -0.079 4.079 29 C 0.033 3.967 30 H 0.146 0.854 31 H 0.069 0.931 32 H 0.128 0.872 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.043 0.957 39 H 0.142 0.858 40 H 0.104 0.896 41 H 0.111 0.889 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.106 0.894 46 H 0.083 0.917 47 H 0.227 0.773 48 H 0.087 0.913 49 H 0.076 0.924 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.308 -14.210 17.355 24.285 hybrid contribution -0.736 1.761 -1.059 2.183 sum 8.572 -12.449 16.296 22.226 Atomic orbital electron populations 1.22945 0.79463 1.04193 1.00446 1.87744 1.21378 1.27254 1.95536 1.22069 0.92730 0.84235 1.00045 1.21036 0.93965 0.93981 1.02401 0.85639 1.21678 1.02452 1.00692 0.93876 1.20020 0.80524 0.90477 0.74936 1.90665 1.60955 1.42384 1.52334 1.49373 1.02913 1.12630 1.71765 1.23786 0.81366 0.94450 1.02651 1.22562 1.00035 0.95843 0.93919 0.84213 1.20717 1.01218 0.95757 0.94664 1.21717 0.89976 0.97553 0.97893 1.60872 1.28975 1.32222 1.02032 1.21626 0.99393 0.92631 0.93156 1.20663 0.83056 0.85882 0.87191 1.90461 1.62008 1.19685 1.77283 1.41950 1.53960 1.09180 1.16382 1.19673 1.37245 0.94755 0.94313 0.90491 1.26055 0.97472 0.94650 1.03154 1.69691 1.46585 1.00851 1.39268 0.84864 0.78097 0.78206 0.77106 1.19852 1.19673 1.19226 1.21821 0.99913 0.97624 0.88582 1.22586 0.86458 0.87643 1.00037 0.85398 0.93146 0.87188 0.94550 0.95417 0.92891 0.90092 0.90182 0.95652 0.85805 0.89581 0.88923 0.93555 0.94563 0.93488 0.89436 0.91657 0.77284 0.91318 0.92406 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 113.37 1.25 1.77 16 2 O -0.40 -10.46 10.24 -148.98 -1.53 -11.98 16 3 C 0.09 2.55 4.67 71.98 0.34 2.88 16 4 C -0.09 -2.43 2.85 -11.54 -0.03 -2.46 16 5 H 0.13 2.51 8.14 -2.38 -0.02 2.49 16 6 C -0.13 -3.36 8.97 71.98 0.65 -2.71 16 7 C 0.55 17.21 7.33 87.65 0.64 17.85 16 8 O -0.58 -23.81 15.83 -3.03 -0.05 -23.86 16 9 N -0.63 -14.85 3.25 -857.54 -2.78 -17.63 16 10 C 0.10 1.29 7.46 81.64 0.61 1.90 16 11 C -0.10 -1.50 4.56 -10.93 -0.05 -1.55 16 12 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 13 C -0.09 -1.93 5.74 29.76 0.17 -1.76 16 14 C 0.06 1.79 5.03 85.97 0.43 2.22 16 15 N -0.52 -18.25 4.21 -910.85 -3.84 -22.09 16 16 C 0.06 2.53 5.44 85.56 0.47 3.00 16 17 C 0.44 23.07 7.26 87.66 0.64 23.70 16 18 O -0.61 -35.74 14.32 -3.06 -0.04 -35.79 16 19 N -0.58 -31.79 5.29 -306.98 -1.62 -33.41 16 20 C -0.33 -19.72 9.68 84.04 0.81 -18.90 16 21 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 22 C -0.01 -0.78 5.50 84.92 0.47 -0.31 16 23 N -0.92 -51.91 13.05 21.66 0.28 -51.63 16 24 Si 0.99 44.65 29.55 68.60 2.03 46.67 16 25 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 27 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 28 C 0.05 1.32 4.74 86.39 0.41 1.73 16 29 C 0.14 2.64 4.29 39.54 0.17 2.81 16 30 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.03 0.98 8.14 -2.39 -0.02 0.97 16 35 H 0.05 1.56 7.95 -2.39 -0.02 1.54 16 36 H 0.08 1.71 5.24 -2.38 -0.01 1.70 16 37 H 0.08 1.87 7.82 -2.39 -0.02 1.85 16 38 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.09 1.12 5.41 -2.39 -0.01 1.11 16 41 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.05 1.28 7.48 -2.39 -0.02 1.26 16 43 H 0.04 1.00 8.02 -2.39 -0.02 0.98 16 44 H 0.05 1.95 5.99 -2.39 -0.01 1.94 16 45 H 0.09 3.50 7.93 -2.38 -0.02 3.48 16 46 H 0.07 2.30 8.12 -2.39 -0.02 2.28 16 47 H 0.39 20.80 7.90 -92.71 -0.73 20.07 16 48 H 0.28 14.51 8.31 -92.71 -0.77 13.74 16 49 H 0.06 1.84 7.51 -2.38 -0.02 1.82 16 50 H 0.06 1.38 8.04 -2.39 -0.02 1.36 16 Total: -1.00 -82.16 395.88 -0.38 -82.54 By element: Atomic # 1 Polarization: 36.79 SS G_CDS: 0.21 Total: 37.00 kcal Atomic # 6 Polarization: 23.21 SS G_CDS: 6.96 Total: 30.17 kcal Atomic # 7 Polarization: -116.79 SS G_CDS: -7.96 Total: -124.76 kcal Atomic # 8 Polarization: -70.01 SS G_CDS: -1.62 Total: -71.63 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -82.16 -0.38 -82.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221439616.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.823 kcal (2) G-P(sol) polarization free energy of solvation -82.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds