Wall clock time and date at job start Tue Mar 31 2020 22:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50705 * 120.00047 * 2 1 4 4 O 1.42898 * 109.46890 * 134.99946 * 3 2 1 5 5 C 1.42894 * 114.00125 * 179.97438 * 4 3 2 6 6 H 1.09007 * 109.47303 * 30.00211 * 5 4 3 7 7 C 1.53001 * 109.47456 * 270.00624 * 5 4 3 8 8 C 1.50701 * 109.47263 * 150.00347 * 5 4 3 9 9 O 1.21280 * 120.00101 * 8.97295 * 8 5 4 10 10 N 1.34777 * 119.99836 * 188.97506 * 8 5 4 11 11 C 1.46926 * 120.62967 * 185.09042 * 10 8 5 12 12 C 1.53189 * 108.77452 * 233.58355 * 11 10 8 13 13 C 1.53035 * 109.31366 * 305.36300 * 12 11 10 14 14 C 1.53038 * 109.53793 * 61.36565 * 13 12 11 15 15 H 1.08999 * 109.49809 * 58.62497 * 14 13 12 16 16 N 1.46907 * 109.49659 * 178.68132 * 14 13 12 17 17 C 1.46895 * 111.00326 * 275.00067 * 16 14 13 18 18 C 1.50695 * 109.47361 * 180.02562 * 17 16 14 19 19 O 1.21296 * 119.99911 * 359.97438 * 18 17 16 20 20 N 1.34775 * 120.00350 * 180.02562 * 18 17 16 21 21 C 1.37090 * 120.00341 * 179.97438 * 20 18 17 22 22 H 1.08007 * 120.00256 * 359.97438 * 21 20 18 23 23 C 1.38951 * 120.00344 * 180.02562 * 21 20 18 24 24 N 1.31416 * 120.00286 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 119.99727 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.47077 * 90.00376 * 25 23 21 27 27 H 1.48501 * 109.47013 * 209.99872 * 25 23 21 28 28 H 1.48495 * 109.47382 * 330.00137 * 25 23 21 29 29 C 1.46925 * 120.63594 * 4.80643 * 10 8 5 30 30 H 1.08009 * 120.00264 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.00212 * 179.72379 * 1 2 3 32 32 H 1.08004 * 119.99805 * 180.02562 * 2 1 3 33 33 H 1.08998 * 109.47093 * 255.00400 * 3 2 1 34 34 H 1.08997 * 109.46609 * 15.00506 * 3 2 1 35 35 H 1.09001 * 109.47256 * 65.03656 * 7 5 4 36 36 H 1.08996 * 109.47195 * 185.03709 * 7 5 4 37 37 H 1.09002 * 109.46794 * 305.03710 * 7 5 4 38 38 H 1.08998 * 109.58377 * 353.37187 * 11 10 8 39 39 H 1.09001 * 109.58639 * 113.79437 * 11 10 8 40 40 H 1.08994 * 109.49849 * 65.31770 * 12 11 10 41 41 H 1.09003 * 109.49720 * 185.41242 * 12 11 10 42 42 H 1.09001 * 109.46339 * 181.38786 * 13 12 11 43 43 H 1.09002 * 109.45942 * 301.34570 * 13 12 11 44 44 H 1.00898 * 110.99466 * 151.04825 * 16 14 13 45 45 H 1.09001 * 109.47227 * 300.00311 * 17 16 14 46 46 H 1.09002 * 109.47195 * 60.00153 * 17 16 14 47 47 H 0.97005 * 119.99445 * 359.97438 * 20 18 17 48 48 H 0.96997 * 120.00102 * 180.02562 * 24 23 21 49 49 H 1.08996 * 109.59250 * 246.20997 * 29 10 8 50 50 H 1.09004 * 109.58290 * 6.62772 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9084 2.4348 1.0321 6 1 3.2845 3.2947 0.7881 7 6 5.0705 2.3503 0.0405 8 6 4.4507 2.5880 2.4298 9 8 4.3326 1.6832 3.2287 10 7 5.0670 3.7306 2.7919 11 6 5.6985 3.8543 4.1128 12 6 5.1457 5.1021 4.8086 13 6 5.3446 6.3178 3.9006 14 6 4.5745 6.1123 2.5941 15 1 3.5167 5.9681 2.8141 16 7 4.7402 7.2933 1.7363 17 6 3.7599 8.3330 2.0766 18 6 3.9600 9.5257 1.1776 19 8 4.8336 9.5112 0.3363 20 7 3.1688 10.6089 1.3089 21 6 3.3511 11.6941 0.4913 22 1 4.1291 11.6813 -0.2578 23 6 2.5358 12.8111 0.6271 24 7 2.7109 13.8516 -0.1563 25 14 1.1909 12.8336 1.9232 26 1 1.7342 13.3841 3.1909 27 1 0.0671 13.6844 1.4556 28 1 0.7021 11.4505 2.1535 29 6 5.1256 4.8740 1.8711 30 1 -0.5401 0.9354 0.0004 31 1 -0.5400 -0.9353 -0.0045 32 1 1.8499 -0.9354 -0.0004 33 1 2.4754 1.4868 -0.9926 34 1 1.3855 2.1160 0.2661 35 1 4.6795 2.3296 -0.9767 36 1 5.7171 3.2191 0.1636 37 1 5.6429 1.4418 0.2283 38 1 5.4711 2.9716 4.7106 39 1 6.7778 3.9498 3.9943 40 1 4.0828 4.9668 5.0078 41 1 5.6753 5.2594 5.7483 42 1 4.9744 7.2112 4.4036 43 1 6.4056 6.4379 3.6817 44 1 4.6780 7.0431 0.7608 45 1 2.7521 7.9407 1.9404 46 1 3.8953 8.6339 3.1155 47 1 2.4704 10.6205 1.9820 48 1 2.1420 14.6314 -0.0613 49 1 6.1591 5.0510 1.5735 50 1 4.5202 4.6643 0.9893 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222067763.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:12 Heat of formation + Delta-G solvation = -83.970076 kcal Electronic energy + Delta-G solvation = -29760.517374 eV Core-core repulsion = 25595.799467 eV Total energy + Delta-G solvation = -4164.717907 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.78766 -38.91342 -38.37051 -37.53979 -35.08059 -34.50951 -33.94857 -33.19542 -31.72754 -31.16459 -30.08991 -26.76453 -26.57858 -25.96546 -24.10884 -23.90676 -22.41529 -20.75346 -20.42624 -19.57217 -19.29004 -18.42148 -17.85885 -17.05461 -16.60502 -16.18262 -15.97345 -15.52110 -15.37790 -15.17308 -14.96409 -14.78156 -14.47490 -14.09947 -13.99911 -13.67988 -13.54556 -13.31713 -13.13753 -13.04253 -12.72157 -12.65443 -12.56558 -12.52590 -12.20792 -12.01819 -11.87547 -11.58739 -11.31938 -11.23639 -11.12622 -10.99217 -10.95060 -10.64012 -10.40708 -10.02411 -9.98622 -9.62561 -9.58842 -8.97039 -8.66982 -8.30555 -8.22689 -6.35914 -3.87632 1.73150 2.28900 2.42287 2.98053 3.03022 3.11496 3.41461 3.67105 3.89753 4.05640 4.17680 4.31381 4.44585 4.51899 4.57285 4.68555 4.71800 4.73663 4.77202 4.90615 4.92119 4.98732 5.09385 5.09927 5.16204 5.19834 5.28320 5.34062 5.44567 5.46504 5.53284 5.61094 5.65383 5.67255 5.70639 5.74169 5.84691 5.94657 6.12066 6.16836 6.18039 6.24215 6.67809 6.95008 7.03986 7.41822 7.52633 7.87002 8.08943 8.54063 8.89679 9.36998 9.76319 10.77057 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011307 B = 0.002373 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.716594 B =11795.240885 C =13092.461437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.150 4.150 3 C 0.084 3.916 4 O -0.354 6.354 5 C 0.070 3.930 6 H 0.086 0.914 7 C -0.174 4.174 8 C 0.520 3.480 9 O -0.520 6.520 10 N -0.607 5.607 11 C 0.112 3.888 12 C -0.134 4.134 13 C -0.110 4.110 14 C 0.073 3.927 15 H 0.047 0.953 16 N -0.660 5.660 17 C 0.049 3.951 18 C 0.449 3.551 19 O -0.565 6.565 20 N -0.589 5.589 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.270 1.270 29 C 0.102 3.898 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.351 0.649 45 H 0.045 0.955 46 H 0.088 0.912 47 H 0.370 0.630 48 H 0.274 0.726 49 H 0.087 0.913 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.584 -24.120 5.385 24.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.168 4.168 3 C 0.008 3.992 4 O -0.272 6.272 5 C 0.009 3.991 6 H 0.103 0.897 7 C -0.232 4.232 8 C 0.306 3.694 9 O -0.395 6.395 10 N -0.343 5.343 11 C -0.010 4.010 12 C -0.173 4.173 13 C -0.148 4.148 14 C -0.038 4.038 15 H 0.065 0.935 16 N -0.293 5.293 17 C -0.084 4.084 18 C 0.235 3.765 19 O -0.447 6.447 20 N -0.229 5.229 21 C -0.434 4.434 22 H 0.138 0.862 23 C -0.161 4.161 24 N -0.520 5.520 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 C -0.021 4.021 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.136 0.864 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.171 0.829 45 H 0.063 0.937 46 H 0.106 0.894 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.106 0.894 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.404 -24.299 5.657 24.952 hybrid contribution -2.093 0.274 0.399 2.148 sum -1.689 -24.025 6.056 24.834 Atomic orbital electron populations 1.23864 0.95534 1.02413 0.99748 1.22683 0.95605 0.98031 1.00499 1.21695 0.88614 0.96325 0.92540 1.88065 1.44216 1.34501 1.60415 1.21908 0.94276 0.89620 0.93324 0.89674 1.22311 0.97876 1.04085 0.98940 1.20338 0.77953 0.81979 0.89091 1.90708 1.56149 1.39903 1.52729 1.47985 1.56234 1.13124 1.16973 1.21661 0.96825 0.99478 0.83057 1.21935 1.01927 0.94526 0.98880 1.21559 1.01595 0.97445 0.94207 1.21961 0.98240 0.89133 0.94450 0.93471 1.60065 1.52350 1.08282 1.08643 1.21754 0.93470 0.92700 1.00439 1.19661 0.85052 0.84373 0.87445 1.90569 1.34554 1.81827 1.37704 1.42208 1.31443 1.15338 1.33893 1.19425 1.18186 0.91113 1.14719 0.86242 1.25047 0.98060 0.95417 0.97624 1.69620 1.39362 1.05193 1.37802 0.86674 0.82217 0.78376 0.82114 1.19561 1.20158 1.19564 1.22114 1.03140 0.84988 0.91879 0.88341 0.87668 0.86442 0.91904 0.92542 0.90929 0.90389 0.90836 0.88934 0.91055 0.91641 0.90257 0.91308 0.90629 0.82871 0.93724 0.89369 0.79693 0.91563 0.89437 0.89828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.22 14.31 29.02 0.42 -0.81 16 2 C -0.15 -1.21 9.89 -36.02 -0.36 -1.57 16 3 C 0.08 0.71 6.16 36.01 0.22 0.93 16 4 O -0.35 -4.00 9.52 -54.98 -0.52 -4.52 16 5 C 0.07 0.66 2.28 -27.88 -0.06 0.60 16 6 H 0.09 0.66 6.63 -51.93 -0.34 0.31 16 7 C -0.17 -1.30 9.18 37.16 0.34 -0.96 16 8 C 0.52 6.13 7.05 -10.98 -0.08 6.05 16 9 O -0.52 -8.19 15.94 -14.19 -0.23 -8.42 16 10 N -0.61 -5.89 2.97 -172.51 -0.51 -6.41 16 11 C 0.11 1.00 6.44 -3.71 -0.02 0.98 16 12 C -0.13 -1.11 6.08 -26.62 -0.16 -1.27 16 13 C -0.11 -1.06 5.39 -26.69 -0.14 -1.20 16 14 C 0.07 0.74 2.66 -67.37 -0.18 0.57 16 15 H 0.05 0.49 7.80 -51.93 -0.41 0.09 16 16 N -0.66 -8.85 5.93 -107.63 -0.64 -9.48 16 17 C 0.05 0.75 5.97 -4.98 -0.03 0.72 16 18 C 0.45 9.66 7.82 -10.99 -0.09 9.58 16 19 O -0.56 -14.44 15.78 5.54 0.09 -14.36 16 20 N -0.59 -13.55 5.09 -10.96 -0.06 -13.60 16 21 C -0.31 -8.44 10.16 -14.94 -0.15 -8.59 16 22 H 0.12 3.78 7.39 -52.48 -0.39 3.39 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.26 13.96 55.50 0.77 -24.49 16 25 Si 0.88 18.93 27.74 -169.99 -4.71 14.21 16 26 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 27 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 28 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 29 C 0.10 0.88 4.31 -3.49 -0.02 0.86 16 30 H 0.10 0.61 7.90 -52.48 -0.41 0.19 16 31 H 0.11 0.58 8.06 -52.49 -0.42 0.16 16 32 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.06 0.42 7.99 -51.93 -0.41 0.01 16 34 H 0.06 0.43 7.80 -51.93 -0.41 0.02 16 35 H 0.07 0.44 7.99 -51.93 -0.41 0.02 16 36 H 0.08 0.51 6.27 -51.93 -0.33 0.18 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 0.94 7.00 -51.93 -0.36 0.58 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.71 7.43 -51.93 -0.39 0.32 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.35 4.72 8.06 -39.29 -0.32 4.41 16 45 H 0.04 0.59 8.06 -51.93 -0.42 0.18 16 46 H 0.09 1.21 7.42 -51.93 -0.39 0.83 16 47 H 0.37 7.46 5.76 -40.82 -0.24 7.23 16 48 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 49 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 50 H 0.08 0.60 5.13 -51.93 -0.27 0.34 16 LS Contribution 402.74 15.07 6.07 6.07 Total: -1.00 -34.77 402.74 -8.18 -42.95 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -8.03 Total: 11.13 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -0.41 Total: 6.91 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.43 Total: -53.98 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.66 Total: -27.30 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -4.71 Total: 14.21 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.77 -8.18 -42.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222067763.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.018 kcal (2) G-P(sol) polarization free energy of solvation -34.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds