Wall clock time and date at job start Tue Mar 31 2020 22:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50705 * 120.00047 * 2 1 4 4 O 1.42898 * 109.46890 * 134.99946 * 3 2 1 5 5 C 1.42894 * 114.00125 * 179.97438 * 4 3 2 6 6 H 1.09007 * 109.47303 * 30.00211 * 5 4 3 7 7 C 1.53001 * 109.47456 * 270.00624 * 5 4 3 8 8 C 1.50701 * 109.47263 * 150.00347 * 5 4 3 9 9 O 1.21280 * 120.00101 * 8.97295 * 8 5 4 10 10 N 1.34777 * 119.99836 * 188.97506 * 8 5 4 11 11 C 1.46926 * 120.62967 * 185.09042 * 10 8 5 12 12 C 1.53189 * 108.77452 * 233.58355 * 11 10 8 13 13 C 1.53035 * 109.31366 * 305.36300 * 12 11 10 14 14 C 1.53038 * 109.53793 * 61.36565 * 13 12 11 15 15 H 1.08999 * 109.49809 * 58.62497 * 14 13 12 16 16 N 1.46907 * 109.49659 * 178.68132 * 14 13 12 17 17 C 1.46895 * 111.00326 * 275.00067 * 16 14 13 18 18 C 1.50695 * 109.47361 * 180.02562 * 17 16 14 19 19 O 1.21296 * 119.99911 * 359.97438 * 18 17 16 20 20 N 1.34775 * 120.00350 * 180.02562 * 18 17 16 21 21 C 1.37090 * 120.00341 * 179.97438 * 20 18 17 22 22 H 1.08007 * 120.00256 * 359.97438 * 21 20 18 23 23 C 1.38951 * 120.00344 * 180.02562 * 21 20 18 24 24 N 1.31416 * 120.00286 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 119.99727 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.47077 * 90.00376 * 25 23 21 27 27 H 1.48501 * 109.47013 * 209.99872 * 25 23 21 28 28 H 1.48495 * 109.47382 * 330.00137 * 25 23 21 29 29 C 1.46925 * 120.63594 * 4.80643 * 10 8 5 30 30 H 1.08009 * 120.00264 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.00212 * 179.72379 * 1 2 3 32 32 H 1.08004 * 119.99805 * 180.02562 * 2 1 3 33 33 H 1.08998 * 109.47093 * 255.00400 * 3 2 1 34 34 H 1.08997 * 109.46609 * 15.00506 * 3 2 1 35 35 H 1.09001 * 109.47256 * 65.03656 * 7 5 4 36 36 H 1.08996 * 109.47195 * 185.03709 * 7 5 4 37 37 H 1.09002 * 109.46794 * 305.03710 * 7 5 4 38 38 H 1.08998 * 109.58377 * 353.37187 * 11 10 8 39 39 H 1.09001 * 109.58639 * 113.79437 * 11 10 8 40 40 H 1.08994 * 109.49849 * 65.31770 * 12 11 10 41 41 H 1.09003 * 109.49720 * 185.41242 * 12 11 10 42 42 H 1.09001 * 109.46339 * 181.38786 * 13 12 11 43 43 H 1.09002 * 109.45942 * 301.34570 * 13 12 11 44 44 H 1.00898 * 110.99466 * 151.04825 * 16 14 13 45 45 H 1.09001 * 109.47227 * 300.00311 * 17 16 14 46 46 H 1.09002 * 109.47195 * 60.00153 * 17 16 14 47 47 H 0.97005 * 119.99445 * 359.97438 * 20 18 17 48 48 H 0.96997 * 120.00102 * 180.02562 * 24 23 21 49 49 H 1.08996 * 109.59250 * 246.20997 * 29 10 8 50 50 H 1.09004 * 109.58290 * 6.62772 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9084 2.4348 1.0321 6 1 3.2845 3.2947 0.7881 7 6 5.0705 2.3503 0.0405 8 6 4.4507 2.5880 2.4298 9 8 4.3326 1.6832 3.2287 10 7 5.0670 3.7306 2.7919 11 6 5.6985 3.8543 4.1128 12 6 5.1457 5.1021 4.8086 13 6 5.3446 6.3178 3.9006 14 6 4.5745 6.1123 2.5941 15 1 3.5167 5.9681 2.8141 16 7 4.7402 7.2933 1.7363 17 6 3.7599 8.3330 2.0766 18 6 3.9600 9.5257 1.1776 19 8 4.8336 9.5112 0.3363 20 7 3.1688 10.6089 1.3089 21 6 3.3511 11.6941 0.4913 22 1 4.1291 11.6813 -0.2578 23 6 2.5358 12.8111 0.6271 24 7 2.7109 13.8516 -0.1563 25 14 1.1909 12.8336 1.9232 26 1 1.7342 13.3841 3.1909 27 1 0.0671 13.6844 1.4556 28 1 0.7021 11.4505 2.1535 29 6 5.1256 4.8740 1.8711 30 1 -0.5401 0.9354 0.0004 31 1 -0.5400 -0.9353 -0.0045 32 1 1.8499 -0.9354 -0.0004 33 1 2.4754 1.4868 -0.9926 34 1 1.3855 2.1160 0.2661 35 1 4.6795 2.3296 -0.9767 36 1 5.7171 3.2191 0.1636 37 1 5.6429 1.4418 0.2283 38 1 5.4711 2.9716 4.7106 39 1 6.7778 3.9498 3.9943 40 1 4.0828 4.9668 5.0078 41 1 5.6753 5.2594 5.7483 42 1 4.9744 7.2112 4.4036 43 1 6.4056 6.4379 3.6817 44 1 4.6780 7.0431 0.7608 45 1 2.7521 7.9407 1.9404 46 1 3.8953 8.6339 3.1155 47 1 2.4704 10.6205 1.9820 48 1 2.1420 14.6314 -0.0613 49 1 6.1591 5.0510 1.5735 50 1 4.5202 4.6643 0.9893 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222067763.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:11 Heat of formation + Delta-G solvation = -109.918936 kcal Electronic energy + Delta-G solvation = -29761.642601 eV Core-core repulsion = 25595.799467 eV Total energy + Delta-G solvation = -4165.843134 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.60800 -40.32936 -39.37894 -38.49524 -36.30022 -35.70974 -35.11533 -33.94318 -33.72662 -31.88464 -31.05244 -28.01872 -27.36161 -26.80087 -25.49745 -24.79464 -23.21181 -21.54059 -21.28297 -21.03811 -20.39044 -20.00326 -18.61117 -17.98099 -17.76987 -17.13297 -16.86051 -16.80639 -16.57613 -16.13640 -15.96061 -15.74916 -15.41165 -15.26849 -15.02991 -14.99370 -14.52982 -14.29926 -14.12105 -13.96130 -13.87157 -13.81381 -13.45376 -13.38526 -13.30905 -13.10545 -12.92557 -12.57330 -12.40270 -12.36215 -11.99094 -11.90312 -11.89214 -11.80158 -11.70495 -11.49753 -11.08767 -10.75382 -10.41759 -10.23426 -10.23207 -9.78200 -9.36003 -8.39959 -6.00566 1.16187 1.30867 1.36499 1.42578 1.45056 1.68070 1.97346 2.23795 2.62959 2.86248 3.16571 3.27888 3.49083 3.64415 3.74404 3.86385 3.91760 4.03212 4.07752 4.11609 4.16685 4.19779 4.28033 4.36022 4.39611 4.44064 4.54092 4.54981 4.61298 4.64114 4.71599 4.78062 4.88578 4.92140 4.95577 5.01346 5.13558 5.19426 5.36350 5.43949 5.54447 5.62923 5.67772 5.91136 6.01974 6.03169 6.25605 6.40167 6.60813 6.89847 7.02484 7.41570 7.97702 8.77514 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011307 B = 0.002373 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.716594 B =11795.240885 C =13092.461437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.173 4.173 3 C 0.081 3.919 4 O -0.383 6.383 5 C 0.069 3.931 6 H 0.107 0.893 7 C -0.169 4.169 8 C 0.514 3.486 9 O -0.569 6.569 10 N -0.600 5.600 11 C 0.107 3.893 12 C -0.123 4.123 13 C -0.109 4.109 14 C 0.078 3.922 15 H 0.054 0.946 16 N -0.673 5.673 17 C 0.063 3.937 18 C 0.450 3.550 19 O -0.611 6.611 20 N -0.592 5.592 21 C -0.326 4.326 22 H 0.057 0.943 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.963 3.037 26 H -0.259 1.259 27 H -0.277 1.277 28 H -0.230 1.230 29 C 0.104 3.896 30 H 0.106 0.894 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.060 0.940 41 H 0.095 0.905 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.350 0.650 45 H 0.076 0.924 46 H 0.111 0.889 47 H 0.389 0.611 48 H 0.278 0.722 49 H 0.094 0.906 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.364 -25.050 7.078 26.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.191 4.191 3 C 0.005 3.995 4 O -0.302 6.302 5 C 0.008 3.992 6 H 0.124 0.876 7 C -0.227 4.227 8 C 0.303 3.697 9 O -0.448 6.448 10 N -0.334 5.334 11 C -0.015 4.015 12 C -0.162 4.162 13 C -0.147 4.147 14 C -0.033 4.033 15 H 0.072 0.928 16 N -0.306 5.306 17 C -0.069 4.069 18 C 0.238 3.762 19 O -0.495 6.495 20 N -0.234 5.234 21 C -0.455 4.455 22 H 0.075 0.925 23 C -0.214 4.214 24 N -0.575 5.575 25 Si 0.783 3.217 26 H -0.183 1.183 27 H -0.202 1.202 28 H -0.154 1.154 29 C -0.019 4.019 30 H 0.125 0.875 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.078 0.922 41 H 0.114 0.886 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.170 0.830 45 H 0.094 0.906 46 H 0.129 0.871 47 H 0.224 0.776 48 H 0.088 0.912 49 H 0.112 0.888 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.362 -25.239 7.356 26.325 hybrid contribution -1.420 0.529 -0.204 1.529 sum -2.783 -24.710 7.152 25.875 Atomic orbital electron populations 1.24065 0.95196 1.03412 0.98024 1.22772 0.96193 0.97994 1.02145 1.21854 0.88236 0.96649 0.92760 1.88036 1.45146 1.35555 1.61470 1.22040 0.95061 0.89944 0.92173 0.87581 1.22297 0.97220 1.03913 0.99259 1.20849 0.77478 0.81718 0.89691 1.90681 1.58259 1.41582 1.54228 1.48025 1.55247 1.12843 1.17309 1.21754 0.97637 0.99285 0.82778 1.21850 1.01747 0.93368 0.99193 1.21551 1.01226 0.97825 0.94088 1.21972 0.98813 0.88317 0.94159 0.92830 1.60043 1.52173 1.09274 1.09132 1.21654 0.95557 0.90201 0.99483 1.20932 0.83094 0.85274 0.86877 1.90551 1.36254 1.82898 1.39814 1.42050 1.32683 1.14670 1.34011 1.18999 1.17716 0.93709 1.15110 0.92485 1.26100 1.00917 0.94104 1.00314 1.69803 1.41114 1.06273 1.40336 0.85388 0.77610 0.80519 0.78150 1.18312 1.20220 1.15368 1.22174 1.03908 0.83858 0.91956 0.87529 0.86495 0.86942 0.90362 0.91818 0.89232 0.89315 0.92138 0.90361 0.89742 0.92165 0.88633 0.91509 0.91054 0.83002 0.90577 0.87100 0.77550 0.91207 0.88788 0.88113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 14.31 67.79 0.97 -1.11 16 2 C -0.17 -2.65 9.89 25.65 0.25 -2.40 16 3 C 0.08 1.24 6.16 71.24 0.44 1.68 16 4 O -0.38 -8.39 9.52 -130.10 -1.24 -9.63 16 5 C 0.07 1.19 2.28 29.85 0.07 1.26 16 6 H 0.11 1.34 6.63 -2.38 -0.02 1.33 16 7 C -0.17 -2.22 9.18 71.98 0.66 -1.56 16 8 C 0.51 11.65 7.05 87.66 0.62 12.27 16 9 O -0.57 -18.08 15.94 15.85 0.25 -17.83 16 10 N -0.60 -10.55 2.97 -818.08 -2.43 -12.98 16 11 C 0.11 1.76 6.44 86.36 0.56 2.31 16 12 C -0.12 -1.74 6.08 30.67 0.19 -1.55 16 13 C -0.11 -1.78 5.39 30.62 0.17 -1.62 16 14 C 0.08 1.33 2.66 45.13 0.12 1.45 16 15 H 0.05 0.90 7.80 -2.39 -0.02 0.88 16 16 N -0.67 -16.16 5.93 -494.43 -2.93 -19.09 16 17 C 0.06 1.70 5.97 85.56 0.51 2.21 16 18 C 0.45 18.88 7.82 87.66 0.69 19.57 16 19 O -0.61 -31.74 15.78 -3.08 -0.05 -31.79 16 20 N -0.59 -26.58 5.09 -306.99 -1.56 -28.14 16 21 C -0.33 -18.51 10.16 84.04 0.85 -17.65 16 22 H 0.06 3.87 7.39 -2.91 -0.02 3.85 16 23 C -0.02 -0.85 5.50 84.93 0.47 -0.39 16 24 N -0.93 -55.34 13.96 21.66 0.30 -55.04 16 25 Si 0.96 37.66 27.74 68.60 1.90 39.56 16 26 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 27 H -0.28 -10.84 7.11 99.48 0.71 -10.14 16 28 H -0.23 -7.47 6.52 99.48 0.65 -6.82 16 29 C 0.10 1.50 4.31 86.51 0.37 1.87 16 30 H 0.11 1.11 7.90 -2.91 -0.02 1.08 16 31 H 0.12 1.10 8.06 -2.91 -0.02 1.08 16 32 H 0.11 1.77 8.06 -2.91 -0.02 1.74 16 33 H 0.08 0.91 7.99 -2.39 -0.02 0.89 16 34 H 0.06 0.85 7.80 -2.39 -0.02 0.83 16 35 H 0.09 0.87 7.99 -2.39 -0.02 0.85 16 36 H 0.09 0.94 6.27 -2.39 -0.01 0.93 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 1.55 7.00 -2.39 -0.02 1.54 16 39 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.07 1.15 7.43 -2.39 -0.02 1.13 16 43 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.35 8.60 8.06 -89.70 -0.72 7.88 16 45 H 0.08 1.64 8.06 -2.39 -0.02 1.62 16 46 H 0.11 2.56 7.42 -2.39 -0.02 2.54 16 47 H 0.39 14.38 5.76 -92.70 -0.53 13.85 16 48 H 0.28 15.09 8.31 -92.71 -0.77 14.32 16 49 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 50 H 0.10 1.12 5.13 -2.38 -0.01 1.11 16 Total: -1.00 -81.27 402.74 0.81 -80.46 By element: Atomic # 1 Polarization: 38.49 SS G_CDS: -0.36 Total: 38.13 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 6.93 Total: 16.35 kcal Atomic # 7 Polarization: -108.63 SS G_CDS: -6.62 Total: -115.25 kcal Atomic # 8 Polarization: -58.21 SS G_CDS: -1.03 Total: -59.25 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 1.90 Total: 39.56 kcal Total: -81.27 0.81 -80.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222067763.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.460 kcal (2) G-P(sol) polarization free energy of solvation -81.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds