Wall clock time and date at job start Tue Mar 31 2020 22:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42898 * 114.00258 * 2 1 4 4 H 1.09001 * 109.47153 * 29.99890 * 3 2 1 5 5 C 1.53002 * 109.47050 * 270.00353 * 3 2 1 6 6 C 1.50697 * 109.47404 * 150.00155 * 3 2 1 7 7 O 1.21278 * 119.99884 * 14.38070 * 6 3 2 8 8 N 1.34773 * 120.00123 * 194.38453 * 6 3 2 9 9 C 1.44320 * 116.32272 * 5.47985 * 8 6 3 10 10 C 1.51626 * 113.16150 * 173.26864 * 9 8 6 11 11 C 1.53086 * 111.45574 * 38.71613 * 10 9 8 12 12 H 1.09005 * 113.26564 * 65.00010 * 11 10 9 13 13 C 1.55591 * 106.64017 * 189.64754 * 11 10 9 14 14 C 1.54331 * 104.73434 * 89.05037 * 13 11 10 15 15 N 1.48418 * 106.86977 * 0.50655 * 14 13 11 16 16 C 1.46896 * 110.99601 * 145.69248 * 15 14 13 17 17 C 1.50697 * 109.47467 * 66.27096 * 16 15 14 18 18 O 1.21297 * 119.99849 * 5.02763 * 17 16 15 19 19 N 1.34774 * 120.00051 * 185.02430 * 17 16 15 20 20 C 1.37103 * 120.00083 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99516 * 0.02562 * 20 19 17 22 22 C 1.38945 * 119.99971 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99603 * 180.02562 * 22 20 19 24 24 Si 1.86794 * 120.00276 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47432 * 89.99697 * 24 22 20 26 26 H 1.48497 * 109.47218 * 210.00074 * 24 22 20 27 27 H 1.48501 * 109.47005 * 329.99751 * 24 22 20 28 28 C 1.47868 * 104.68181 * 25.86524 * 15 14 13 29 29 H 1.08996 * 109.01679 * 72.53998 * 28 15 14 30 30 C 1.44013 * 116.32412 * 185.46194 * 8 6 3 31 31 H 1.09001 * 109.46603 * 299.99808 * 1 2 3 32 32 H 1.09003 * 109.47087 * 59.99949 * 1 2 3 33 33 H 1.08996 * 109.47131 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47205 * 305.42315 * 5 3 2 35 35 H 1.09004 * 109.47455 * 65.42257 * 5 3 2 36 36 H 1.09000 * 109.47010 * 185.42377 * 5 3 2 37 37 H 1.08996 * 108.74649 * 294.22337 * 9 8 6 38 38 H 1.08995 * 108.74276 * 52.44113 * 9 8 6 39 39 H 1.08998 * 109.08049 * 159.11524 * 10 9 8 40 40 H 1.09000 * 109.08454 * 278.16374 * 10 9 8 41 41 H 1.09000 * 110.40576 * 330.20066 * 13 11 10 42 42 H 1.09001 * 110.40745 * 207.89229 * 13 11 10 43 43 H 1.09000 * 109.98242 * 119.86248 * 14 13 11 44 44 H 1.09006 * 109.98086 * 241.15588 * 14 13 11 45 45 H 1.09008 * 109.46668 * 186.27326 * 16 15 14 46 46 H 1.09004 * 109.47374 * 306.26535 * 16 15 14 47 47 H 0.97003 * 120.00233 * 0.02562 * 19 17 16 48 48 H 0.97010 * 119.99682 * 180.02562 * 23 22 20 49 49 H 1.09003 * 108.18188 * 55.99204 * 30 8 6 50 50 H 1.08994 * 108.18273 * 299.36475 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.3387 1.2639 0.7103 7 8 3.8706 0.1983 0.9398 8 7 3.9357 2.4107 1.0907 9 6 3.1795 3.6233 0.8889 10 6 3.8452 4.8476 1.4863 11 6 5.3637 4.8085 1.2957 12 1 5.6678 4.8605 0.2503 13 6 5.9502 5.9674 2.1523 14 6 6.1979 5.3423 3.5414 15 7 5.7850 3.9194 3.4532 16 6 6.6405 3.0701 4.2926 17 6 6.4204 3.4131 5.7434 18 8 5.5642 4.2142 6.0540 19 7 7.1747 2.8297 6.6957 20 6 6.9748 3.1421 8.0156 21 1 6.2125 3.8555 8.2922 22 6 7.7529 2.5410 8.9974 23 7 7.5609 2.8402 10.2625 24 14 9.0718 1.3078 8.5190 25 1 10.3546 2.0194 8.2883 26 1 9.2444 0.3183 9.6128 27 1 8.6649 0.6052 7.2756 28 6 5.9346 3.5737 2.0234 29 1 6.9956 3.4986 1.7853 30 6 5.2559 2.2876 1.6528 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 2.8035 1.0283 -1.9837 35 1 1.2493 1.8940 -1.9276 36 1 2.7481 2.7236 -1.4441 37 1 3.0508 3.7818 -0.1817 38 1 2.1970 3.5032 1.3452 39 1 3.4497 5.7403 1.0018 40 1 3.6202 4.8914 2.5519 41 1 5.2339 6.7857 2.2260 42 1 6.8873 6.3213 1.7223 43 1 7.2557 5.4080 3.7962 44 1 5.6005 5.8575 4.2937 45 1 6.3893 2.0227 4.1246 46 1 7.6859 3.2389 4.0338 47 1 7.8597 2.1893 6.4473 48 1 8.1043 2.4208 10.9480 49 1 5.8854 1.7663 0.9316 50 1 5.1883 1.6685 2.5473 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222348352.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:34 Heat of formation + Delta-G solvation = -84.594932 kcal Electronic energy + Delta-G solvation = -31045.841318 eV Core-core repulsion = 26881.096315 eV Total energy + Delta-G solvation = -4164.745003 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.14113 -39.65762 -38.19490 -37.67422 -35.97145 -33.99655 -33.28173 -32.37034 -31.64530 -30.36400 -29.97548 -27.12942 -26.83795 -25.40132 -24.20814 -23.49214 -23.22959 -21.00110 -20.34266 -19.31476 -18.54836 -18.17454 -17.76942 -16.98932 -16.47436 -15.90830 -15.78933 -15.74657 -15.37367 -15.35634 -14.86699 -14.61602 -14.17467 -14.02935 -13.79966 -13.53803 -13.39077 -13.27264 -13.04850 -12.81062 -12.72947 -12.46253 -12.33115 -12.21424 -12.10077 -12.01619 -11.68046 -11.52589 -11.36660 -11.24443 -10.97973 -10.80475 -10.62617 -10.56864 -10.55487 -10.21376 -9.96320 -9.62509 -9.54025 -8.71925 -8.57052 -8.17829 -8.09571 -6.29826 -3.81065 2.43941 2.60382 3.05311 3.08400 3.16840 3.60869 3.75504 3.84992 4.11894 4.15739 4.33760 4.39945 4.49164 4.59542 4.71359 4.73875 4.83242 4.95290 4.97083 5.06216 5.09693 5.14611 5.16612 5.22751 5.26197 5.28918 5.37778 5.39668 5.45846 5.51553 5.59320 5.66113 5.73771 5.74970 5.75492 5.82265 5.91836 5.97924 6.06268 6.26082 6.39583 6.53608 6.71539 7.02316 7.08204 7.17850 7.59703 8.05323 8.15366 8.61634 8.96532 9.43966 9.84802 10.83318 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013430 B = 0.002884 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.427201 B = 9705.046702 C =10891.008593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.070 3.930 4 H 0.086 0.914 5 C -0.172 4.172 6 C 0.504 3.496 7 O -0.516 6.516 8 N -0.587 5.587 9 C 0.111 3.889 10 C -0.119 4.119 11 C -0.082 4.082 12 H 0.089 0.911 13 C -0.129 4.129 14 C 0.041 3.959 15 N -0.480 5.480 16 C 0.030 3.970 17 C 0.455 3.545 18 O -0.559 6.559 19 N -0.592 5.592 20 C -0.303 4.303 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.878 3.122 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 C 0.057 3.943 29 H 0.058 0.942 30 C 0.139 3.861 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.043 0.957 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.050 0.950 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.066 0.934 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.266 2.348 -26.348 27.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.279 6.279 3 C 0.008 3.992 4 H 0.104 0.896 5 C -0.230 4.230 6 C 0.290 3.710 7 O -0.391 6.391 8 N -0.322 5.322 9 C -0.012 4.012 10 C -0.157 4.157 11 C -0.101 4.101 12 H 0.108 0.892 13 C -0.167 4.167 14 C -0.086 4.086 15 N -0.204 5.204 16 C -0.102 4.102 17 C 0.240 3.760 18 O -0.440 6.440 19 N -0.232 5.232 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.705 3.295 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.194 1.194 28 C -0.052 4.052 29 H 0.075 0.925 30 C 0.016 3.984 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.061 0.939 44 H 0.114 0.886 45 H 0.110 0.890 46 H 0.068 0.932 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.084 0.916 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.900 2.079 -25.537 27.123 hybrid contribution 1.792 -0.712 -0.274 1.947 sum -7.108 1.367 -25.810 26.806 Atomic orbital electron populations 1.22890 0.80606 1.03299 1.00043 1.88057 1.19657 1.25222 1.94948 1.22004 0.93582 0.86796 0.96780 0.89635 1.22283 1.03335 1.02444 0.94892 1.20457 0.86936 0.84022 0.79600 1.90720 1.65104 1.29364 1.53892 1.46473 1.16910 1.06664 1.62115 1.20978 0.94878 0.85170 1.00194 1.21502 0.94371 0.96015 1.03772 1.22035 0.95599 0.94055 0.98442 0.89231 1.22816 1.00897 0.97748 0.95209 1.22999 0.99655 0.88852 0.97096 1.64647 1.50310 1.02492 1.02977 1.22176 0.95221 0.98889 0.93909 1.19540 0.85006 0.85522 0.85911 1.90547 1.34811 1.36411 1.82276 1.42214 1.33662 1.40134 1.07156 1.19410 1.19766 1.24789 0.79218 0.86306 1.25027 0.98095 0.97996 0.95032 1.69624 1.40101 1.43116 0.99382 0.86685 0.82379 0.81661 0.78785 1.19688 1.20145 1.19419 1.22041 0.98349 0.94382 0.90388 0.92460 1.19976 0.82452 0.96720 0.99241 0.93713 0.93868 0.89126 0.90953 0.91203 0.90506 0.91881 0.91536 0.90623 0.89106 0.90662 0.91693 0.93895 0.88612 0.89013 0.93171 0.79739 0.91638 0.91585 0.90787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 101.05 1.09 1.31 16 2 O -0.36 -4.30 9.92 -54.72 -0.54 -4.85 16 3 C 0.07 0.69 2.38 -27.88 -0.07 0.62 16 4 H 0.09 0.66 6.26 -51.93 -0.33 0.33 16 5 C -0.17 -1.21 9.36 37.16 0.35 -0.86 16 6 C 0.50 6.72 6.83 -10.99 -0.08 6.65 16 7 O -0.52 -9.21 16.22 -13.93 -0.23 -9.43 16 8 N -0.59 -6.79 3.20 -179.95 -0.58 -7.37 16 9 C 0.11 0.93 5.10 -5.90 -0.03 0.90 16 10 C -0.12 -1.05 4.85 -27.38 -0.13 -1.19 16 11 C -0.08 -0.76 3.66 -88.53 -0.32 -1.09 16 12 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 13 C -0.13 -1.29 6.32 -24.66 -0.16 -1.45 16 14 C 0.04 0.60 5.46 -2.29 -0.01 0.59 16 15 N -0.48 -7.33 4.20 -226.08 -0.95 -8.28 16 16 C 0.03 0.51 5.10 -4.98 -0.03 0.48 16 17 C 0.45 10.37 7.49 -10.99 -0.08 10.29 16 18 O -0.56 -14.81 14.61 5.54 0.08 -14.73 16 19 N -0.59 -14.30 5.09 -10.96 -0.06 -14.35 16 20 C -0.30 -8.64 10.16 -14.93 -0.15 -8.80 16 21 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 22 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 23 N -0.88 -26.02 13.96 55.50 0.77 -25.25 16 24 Si 0.88 19.73 27.74 -169.99 -4.71 15.02 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.27 -5.57 6.52 56.52 0.37 -5.20 16 28 C 0.06 0.68 2.09 -67.97 -0.14 0.53 16 29 H 0.06 0.63 8.03 -51.93 -0.42 0.21 16 30 C 0.14 1.77 5.16 -6.82 -0.04 1.73 16 31 H 0.04 0.30 8.09 -51.93 -0.42 -0.12 16 32 H 0.04 0.24 8.00 -51.93 -0.42 -0.18 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.36 8.00 -51.93 -0.42 -0.05 16 36 H 0.08 0.43 5.63 -51.93 -0.29 0.14 16 37 H 0.06 0.37 5.55 -51.93 -0.29 0.09 16 38 H 0.07 0.52 6.88 -51.93 -0.36 0.16 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 1.08 7.37 -51.93 -0.38 0.70 16 41 H 0.07 0.69 7.81 -51.93 -0.41 0.29 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 44 H 0.10 1.65 7.35 -51.93 -0.38 1.27 16 45 H 0.09 1.47 6.90 -51.92 -0.36 1.11 16 46 H 0.05 0.75 7.92 -51.93 -0.41 0.33 16 47 H 0.37 7.93 5.76 -40.82 -0.24 7.69 16 48 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 49 H 0.07 0.80 8.06 -51.93 -0.42 0.39 16 50 H 0.07 1.14 6.61 -51.93 -0.34 0.80 16 LS Contribution 384.18 15.07 5.79 5.79 Total: -1.00 -36.21 384.18 -8.24 -44.45 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -7.93 Total: 8.23 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: 0.11 Total: 10.77 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.80 Total: -55.25 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.69 Total: -29.01 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -4.71 Total: 15.02 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.21 -8.24 -44.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222348352.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.143 kcal (2) G-P(sol) polarization free energy of solvation -36.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds