Wall clock time and date at job start Tue Mar 31 2020 22:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42898 * 114.00258 * 2 1 4 4 H 1.09001 * 109.47153 * 29.99890 * 3 2 1 5 5 C 1.53002 * 109.47050 * 270.00353 * 3 2 1 6 6 C 1.50697 * 109.47404 * 150.00155 * 3 2 1 7 7 O 1.21278 * 119.99884 * 14.38070 * 6 3 2 8 8 N 1.34773 * 120.00123 * 194.38453 * 6 3 2 9 9 C 1.44320 * 116.32272 * 5.47985 * 8 6 3 10 10 C 1.51626 * 113.16150 * 173.26864 * 9 8 6 11 11 C 1.53086 * 111.45574 * 38.71613 * 10 9 8 12 12 H 1.09005 * 113.26564 * 65.00010 * 11 10 9 13 13 C 1.55591 * 106.64017 * 189.64754 * 11 10 9 14 14 C 1.54331 * 104.73434 * 89.05037 * 13 11 10 15 15 N 1.48418 * 106.86977 * 0.50655 * 14 13 11 16 16 C 1.46896 * 110.99601 * 145.69248 * 15 14 13 17 17 C 1.50697 * 109.47467 * 66.27096 * 16 15 14 18 18 O 1.21297 * 119.99849 * 5.02763 * 17 16 15 19 19 N 1.34774 * 120.00051 * 185.02430 * 17 16 15 20 20 C 1.37103 * 120.00083 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99516 * 0.02562 * 20 19 17 22 22 C 1.38945 * 119.99971 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99603 * 180.02562 * 22 20 19 24 24 Si 1.86794 * 120.00276 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47432 * 89.99697 * 24 22 20 26 26 H 1.48497 * 109.47218 * 210.00074 * 24 22 20 27 27 H 1.48501 * 109.47005 * 329.99751 * 24 22 20 28 28 C 1.47868 * 104.68181 * 25.86524 * 15 14 13 29 29 H 1.08996 * 109.01679 * 72.53998 * 28 15 14 30 30 C 1.44013 * 116.32412 * 185.46194 * 8 6 3 31 31 H 1.09001 * 109.46603 * 299.99808 * 1 2 3 32 32 H 1.09003 * 109.47087 * 59.99949 * 1 2 3 33 33 H 1.08996 * 109.47131 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47205 * 305.42315 * 5 3 2 35 35 H 1.09004 * 109.47455 * 65.42257 * 5 3 2 36 36 H 1.09000 * 109.47010 * 185.42377 * 5 3 2 37 37 H 1.08996 * 108.74649 * 294.22337 * 9 8 6 38 38 H 1.08995 * 108.74276 * 52.44113 * 9 8 6 39 39 H 1.08998 * 109.08049 * 159.11524 * 10 9 8 40 40 H 1.09000 * 109.08454 * 278.16374 * 10 9 8 41 41 H 1.09000 * 110.40576 * 330.20066 * 13 11 10 42 42 H 1.09001 * 110.40745 * 207.89229 * 13 11 10 43 43 H 1.09000 * 109.98242 * 119.86248 * 14 13 11 44 44 H 1.09006 * 109.98086 * 241.15588 * 14 13 11 45 45 H 1.09008 * 109.46668 * 186.27326 * 16 15 14 46 46 H 1.09004 * 109.47374 * 306.26535 * 16 15 14 47 47 H 0.97003 * 120.00233 * 0.02562 * 19 17 16 48 48 H 0.97010 * 119.99682 * 180.02562 * 23 22 20 49 49 H 1.09003 * 108.18188 * 55.99204 * 30 8 6 50 50 H 1.08994 * 108.18273 * 299.36475 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.3387 1.2639 0.7103 7 8 3.8706 0.1983 0.9398 8 7 3.9357 2.4107 1.0907 9 6 3.1795 3.6233 0.8889 10 6 3.8452 4.8476 1.4863 11 6 5.3637 4.8085 1.2957 12 1 5.6678 4.8605 0.2503 13 6 5.9502 5.9674 2.1523 14 6 6.1979 5.3423 3.5414 15 7 5.7850 3.9194 3.4532 16 6 6.6405 3.0701 4.2926 17 6 6.4204 3.4131 5.7434 18 8 5.5642 4.2142 6.0540 19 7 7.1747 2.8297 6.6957 20 6 6.9748 3.1421 8.0156 21 1 6.2125 3.8555 8.2922 22 6 7.7529 2.5410 8.9974 23 7 7.5609 2.8402 10.2625 24 14 9.0718 1.3078 8.5190 25 1 10.3546 2.0194 8.2883 26 1 9.2444 0.3183 9.6128 27 1 8.6649 0.6052 7.2756 28 6 5.9346 3.5737 2.0234 29 1 6.9956 3.4986 1.7853 30 6 5.2559 2.2876 1.6528 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 2.8035 1.0283 -1.9837 35 1 1.2493 1.8940 -1.9276 36 1 2.7481 2.7236 -1.4441 37 1 3.0508 3.7818 -0.1817 38 1 2.1970 3.5032 1.3452 39 1 3.4497 5.7403 1.0018 40 1 3.6202 4.8914 2.5519 41 1 5.2339 6.7857 2.2260 42 1 6.8873 6.3213 1.7223 43 1 7.2557 5.4080 3.7962 44 1 5.6005 5.8575 4.2937 45 1 6.3893 2.0227 4.1246 46 1 7.6859 3.2389 4.0338 47 1 7.8597 2.1893 6.4473 48 1 8.1043 2.4208 10.9480 49 1 5.8854 1.7663 0.9316 50 1 5.1883 1.6685 2.5473 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222348352.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:33 Heat of formation + Delta-G solvation = -113.330204 kcal Electronic energy + Delta-G solvation = -31047.087372 eV Core-core repulsion = 26881.096315 eV Total energy + Delta-G solvation = -4165.991058 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.07527 -40.81243 -39.77908 -38.57208 -37.03518 -36.00032 -34.34196 -33.74734 -33.16528 -31.30727 -30.89067 -28.36930 -27.70870 -26.27371 -25.93680 -24.29436 -24.12421 -22.12395 -21.22618 -21.22128 -20.19912 -19.33197 -18.60823 -17.85904 -17.60856 -17.43037 -16.91475 -16.71394 -16.57810 -16.34068 -16.08215 -15.80454 -15.45823 -15.22311 -15.04392 -14.75346 -14.56327 -14.24236 -14.19216 -13.94411 -13.81160 -13.69982 -13.45449 -13.27365 -13.09210 -12.99340 -12.78746 -12.64932 -12.46824 -12.41714 -12.17960 -12.03409 -12.02123 -11.64368 -11.53732 -11.45120 -11.35529 -10.95092 -10.51709 -10.43228 -10.27649 -9.62311 -9.33762 -8.44721 -6.05150 1.27244 1.30921 1.40248 1.48066 1.78045 1.91221 2.19057 2.56511 2.93037 3.10434 3.11243 3.40731 3.51950 3.66188 3.81134 3.93102 3.97661 4.05697 4.06922 4.17311 4.18100 4.27810 4.31542 4.35727 4.45125 4.46311 4.49194 4.55073 4.65742 4.70160 4.80465 4.84022 4.85265 4.86096 4.89363 5.02495 5.12462 5.15769 5.24779 5.28217 5.49061 5.51371 5.67181 5.85401 5.92197 5.99052 6.04314 6.34918 6.56216 6.84596 7.11134 7.35771 7.92300 8.72914 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013430 B = 0.002884 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.427201 B = 9705.046702 C =10891.008593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.400 6.400 3 C 0.070 3.930 4 H 0.110 0.890 5 C -0.164 4.164 6 C 0.494 3.506 7 O -0.575 6.575 8 N -0.583 5.583 9 C 0.102 3.898 10 C -0.117 4.117 11 C -0.072 4.072 12 H 0.125 0.875 13 C -0.116 4.116 14 C 0.040 3.960 15 N -0.503 5.503 16 C 0.042 3.958 17 C 0.454 3.546 18 O -0.603 6.603 19 N -0.594 5.594 20 C -0.326 4.326 21 H 0.057 0.943 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.962 3.038 25 H -0.254 1.254 26 H -0.274 1.274 27 H -0.238 1.238 28 C 0.059 3.941 29 H 0.075 0.925 30 C 0.142 3.858 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.109 0.891 40 H 0.052 0.948 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.035 0.965 44 H 0.053 0.947 45 H 0.103 0.897 46 H 0.082 0.918 47 H 0.388 0.612 48 H 0.279 0.721 49 H 0.072 0.928 50 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.520 2.485 -30.696 31.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.319 6.319 3 C 0.009 3.991 4 H 0.127 0.873 5 C -0.221 4.221 6 C 0.282 3.718 7 O -0.454 6.454 8 N -0.317 5.317 9 C -0.019 4.019 10 C -0.154 4.154 11 C -0.091 4.091 12 H 0.143 0.857 13 C -0.154 4.154 14 C -0.087 4.087 15 N -0.228 5.228 16 C -0.089 4.089 17 C 0.241 3.759 18 O -0.486 6.486 19 N -0.236 5.236 20 C -0.455 4.455 21 H 0.075 0.925 22 C -0.212 4.212 23 N -0.574 5.574 24 Si 0.782 3.218 25 H -0.178 1.178 26 H -0.199 1.199 27 H -0.161 1.161 28 C -0.050 4.050 29 H 0.093 0.907 30 C 0.019 3.981 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.120 0.880 38 H 0.091 0.909 39 H 0.128 0.872 40 H 0.070 0.930 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.054 0.946 44 H 0.072 0.928 45 H 0.121 0.879 46 H 0.099 0.901 47 H 0.223 0.777 48 H 0.089 0.911 49 H 0.090 0.910 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.177 2.261 -29.921 31.100 hybrid contribution 1.407 -0.654 1.149 1.931 sum -6.770 1.607 -28.772 29.601 Atomic orbital electron populations 1.23085 0.78660 1.04119 1.01489 1.88007 1.21924 1.26749 1.95245 1.22173 0.91796 0.86713 0.98396 0.87278 1.22265 1.04740 1.02580 0.92531 1.21268 0.87994 0.83500 0.79070 1.90682 1.66845 1.31464 1.56441 1.46627 1.16574 1.07528 1.60926 1.21298 0.94523 0.83500 1.02622 1.21500 0.94485 0.97658 1.01802 1.22146 0.95543 0.91715 0.99653 0.85689 1.22755 1.02428 0.97956 0.92260 1.22914 0.98174 0.88548 0.99108 1.64536 1.50466 1.02684 1.05095 1.22034 0.97430 0.99801 0.89658 1.20724 0.83263 0.83679 0.88193 1.90529 1.36435 1.38035 1.83627 1.42066 1.34747 1.41060 1.05732 1.18984 1.19559 1.25039 0.81918 0.92530 1.26063 1.00685 1.00092 0.94374 1.69798 1.41771 1.44768 1.01045 0.85404 0.78468 0.78255 0.79676 1.17820 1.19865 1.16126 1.22115 0.99512 0.95153 0.88180 0.90725 1.19872 0.83503 0.96750 0.97986 0.93240 0.91319 0.88826 0.92625 0.88734 0.88573 0.88013 0.90922 0.87229 0.92956 0.89680 0.89486 0.94640 0.92846 0.87864 0.90069 0.77716 0.91107 0.91002 0.94376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.82 113.37 1.23 1.53 16 2 O -0.40 -9.22 9.92 -130.35 -1.29 -10.51 16 3 C 0.07 1.25 2.38 29.85 0.07 1.32 16 4 H 0.11 1.36 6.26 -2.39 -0.01 1.34 16 5 C -0.16 -1.75 9.36 71.98 0.67 -1.07 16 6 C 0.49 12.82 6.83 87.66 0.60 13.42 16 7 O -0.58 -21.08 16.22 15.61 0.25 -20.83 16 8 N -0.58 -12.51 3.20 -841.64 -2.69 -15.20 16 9 C 0.10 1.36 5.10 86.33 0.44 1.81 16 10 C -0.12 -1.69 4.85 30.17 0.15 -1.55 16 11 C -0.07 -1.05 3.66 -9.44 -0.03 -1.09 16 12 H 0.13 1.11 8.14 -2.38 -0.02 1.09 16 13 C -0.12 -1.99 6.32 31.94 0.20 -1.79 16 14 C 0.04 1.16 5.46 86.46 0.47 1.63 16 15 N -0.50 -15.21 4.20 -869.20 -3.65 -18.86 16 16 C 0.04 1.42 5.10 85.56 0.44 1.86 16 17 C 0.45 21.43 7.49 87.66 0.66 22.08 16 18 O -0.60 -34.06 14.61 -3.08 -0.05 -34.11 16 19 N -0.59 -29.33 5.09 -306.98 -1.56 -30.89 16 20 C -0.33 -19.60 10.16 84.04 0.85 -18.75 16 21 H 0.06 4.02 7.39 -2.91 -0.02 4.00 16 22 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 23 N -0.93 -57.31 13.96 21.66 0.30 -57.01 16 24 Si 0.96 40.34 27.74 68.60 1.90 42.24 16 25 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 27 H -0.24 -8.70 6.52 99.48 0.65 -8.05 16 28 C 0.06 1.25 2.09 44.22 0.09 1.34 16 29 H 0.07 1.37 8.03 -2.39 -0.02 1.35 16 30 C 0.14 3.46 5.16 85.90 0.44 3.90 16 31 H 0.05 0.59 8.09 -2.39 -0.02 0.58 16 32 H 0.07 0.55 8.00 -2.39 -0.02 0.53 16 33 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 35 H 0.09 0.56 8.00 -2.39 -0.02 0.54 16 36 H 0.10 0.61 5.63 -2.39 -0.01 0.60 16 37 H 0.10 0.65 5.55 -2.39 -0.01 0.63 16 38 H 0.07 0.92 6.88 -2.39 -0.02 0.90 16 39 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.05 1.19 7.37 -2.39 -0.02 1.18 16 41 H 0.08 1.32 7.81 -2.39 -0.02 1.31 16 42 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.04 1.04 7.65 -2.39 -0.02 1.02 16 44 H 0.05 1.96 7.35 -2.38 -0.02 1.94 16 45 H 0.10 3.26 6.90 -2.38 -0.02 3.24 16 46 H 0.08 2.24 7.92 -2.39 -0.02 2.22 16 47 H 0.39 16.16 5.76 -92.71 -0.53 15.63 16 48 H 0.28 15.67 8.31 -92.70 -0.77 14.90 16 49 H 0.07 1.66 8.06 -2.39 -0.02 1.64 16 50 H 0.04 1.20 6.61 -2.39 -0.02 1.18 16 Total: -1.00 -89.38 384.18 0.33 -89.05 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: 0.36 Total: 31.78 kcal Atomic # 6 Polarization: 17.59 SS G_CDS: 6.75 Total: 24.33 kcal Atomic # 7 Polarization: -114.36 SS G_CDS: -7.60 Total: -121.96 kcal Atomic # 8 Polarization: -64.36 SS G_CDS: -1.09 Total: -65.45 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 1.90 Total: 42.24 kcal Total: -89.38 0.33 -89.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222348352.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.281 kcal (2) G-P(sol) polarization free energy of solvation -89.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds